RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 HYAL1Q12794 435 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 CDC20Q12834 499 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 MLLT11Q13015 90 aaPredicted RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 ATP1A4Q13733 1029 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 LASP1Q14847 261 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 TRAM2Q15035 370 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 SSX1Q16384 188 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 TSTQ16762 297 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 ZNF181Q2M3W8 571 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 TMEM44Q2T9K0 475 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 TPRG1LQ5T0D9 272 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 ATAD3BQ5T9A4 648 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 AGAP7PQ5VUJ5 663 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 C18orf63Q68DL7 685 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 HEPHL1Q6MZM0 1159 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 CDC73Q6P1J9 531 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 TMEM107Q6UX40 140 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 PLEKHG7Q6ZR37 379 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 C9orf47Q6ZRZ4 202 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 RASSF6Q6ZTQ3 369 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 SZRD1Q7Z422 152 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 ZER1Q7Z7L7 766 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 IQCHQ86VS3 1027 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 CLDN22Q8N7P3 220 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 PROKR2Q8NFJ6 384 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 OR4K5Q8NGD3 323 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 OR6T1Q8NGN1 323 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 OR9A2Q8NGT5 310 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 WDR36Q8NI36 951 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 FLVCR1-AS1Q8TAF5 88 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 GNPDA2Q8TDQ7 276 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 ZFPM2Q8WW38 1151 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 LCN9Q8WX39 176 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 OR1E3Q8WZA6 343 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 ST8SIA4Q92187 359 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 MRPL38Q96DV4 380 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 ERLEC1Q96DZ1 483 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 TM4SF19Q96DZ7 209 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 ELP4Q96EB1 424 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 TRMT61AQ96FX7 289 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 SMIM10Q96HG1 83 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 C10orf90Q96M02 699 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 OPALINQ96PE5 141 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 MS4A4EQ96PG1 132 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 TRNT1Q96Q11 434 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 OR7D2Q96RA2 312 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 WFDC6Q9BQY6 131 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 MND1Q9BWT6 205 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 TSSK6Q9BXA6 273 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 PRRG3Q9BZD7 231 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 POLR2J2Q9GZM3 115 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 OR51E2Q9H255 320 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 SLC38A1Q9H2H9 487 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 SP140LQ9H930 580 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 C3orf14Q9HBI5 128 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 HHATLQ9HCP6 504 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 FGF20Q9NP95 211 aaPredicted RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 ISYNA1Q9NPH2 558 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 PLSCR4Q9NRQ2 329 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 TAS2R16Q9NYV7 291 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 DNAJC27Q9NZQ0 273 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 SEC14L4Q9UDX3 406 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 TBC1D29Q9UFV1 150 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 DAPK2Q9UIK4 370 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 DIMT1Q9UNQ2 313 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 NCKAP1Q9Y2A7 1128 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 PEX16Q9Y5Y5 336 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 ZNF780BQ9Y6R6 833 aa4.39□□□□□ -1.71
USP48-202ENST00000374730 SPTBN5Q9NRC6 3674 aaKnown RBP4.39□□□□□ -1.71
USP48-202ENST00000374730 SCN2AQ99250 2005 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 RANBP2P49792 3224 aaKnown RBP4.38□□□□□ -1.71
USP48-202ENST00000374730 A0A087WUU8 490 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 TBC1D3DA0A087WVF3 549 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 TBC1D3IA0A087WXS9 549 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 TBC1D3EA0A087X179 549 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 TBC1D3KA0A087X1G2 549 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 LOC100506127A0A0U1RQW1 187 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 PNMA8CA0A1B0GUJ8 204 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 TMEM129A0AVI4 362 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 HYKKA2RU49 373 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 TBC1D3FA6NER0 549 aaPredicted RBP4.38□□□□□ -1.71
USP48-202ENST00000374730 PRR23AA6NEV1 266 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 URADA6NGE7 173 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 EPOPA6NHQ4 379 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 GLOD5A6NK44 160 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 DUXAA6NLW8 204 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 SNTNA6NMZ2 147 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 KDM4EB2RXH2 506 aaPredicted RBP4.38□□□□□ -1.71
USP48-202ENST00000374730 TBC1D3LB9A6J9 549 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 BTN3A3O00478 584 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 MYL12BO14950 172 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 SLC31A1O15431 190 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 LINC01565O15544 149 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 KIAA0513O60268 411 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 TPST2O60704 377 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 GPX5O75715 221 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 UPK1BO75841 260 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 SNX4O95219 450 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 TNFRSF6BO95407 300 aa4.38□□□□□ -1.71
USP48-202ENST00000374730 KLF8O95600 359 aaPredicted RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms