RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 SRMP19623 302 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 RAD52P43351 418 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 LSSP48449 732 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 CENPAP49450 140 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 MAT1AQ00266 395 aaKnown RBP11.15□□□□□ -0.62
CLIP3-201ENST00000360535 C19orf57Q0VDD7 668 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 GPM6BQ13491 265 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 CEBPEQ15744 281 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 MEIOBQ8N635 442 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 ZFYVE21Q9BQ24 234 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 LIN7BQ9HAP6 207 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 DLL4Q9NR61 685 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 B3GNT2Q9NY97 397 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 DTX4Q9Y2E6 619 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 FKBP7Q9Y680 259 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 C7orf66A4D0T2 115 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 SIX6O95475 246 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 ZNF10P21506 573 aaPredicted RBP11.14□□□□□ -0.63
CLIP3-201ENST00000360535 LCN1P31025 176 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 ADH7P40394 386 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 C1orf61Q13536 156 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 CAMK2DQ13557 499 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 STPG1Q5TH74 334 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 CD276Q5ZPR3 534 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 PXKQ7Z7A4 578 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 SAMD14Q8IZD0 417 aaPredicted RBP11.14□□□□□ -0.63
CLIP3-201ENST00000360535 SMIM19Q96E16 107 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 C1QTNF7Q9BXJ2 289 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 HEBP2Q9Y5Z4 205 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 OR6C68A6NDL8 312 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 GPR89AB7ZAQ6 455 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 BRINP1O60477 761 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 PTP4A3O75365 173 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 SERPINA3P01011 423 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 IGKV1D-16P01601 117 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 F13BP05160 661 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 GPR89BP0CG08 455 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 DCTDP32321 178 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 RPS15P62841 145 aaKnown RBP11.14□□□□□ -0.63
CLIP3-201ENST00000360535 HSF2Q03933 536 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 PXDC1Q5TGL8 231 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 ARHGAP11AQ6P4F7 1023 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 NUDT18Q6ZVK8 323 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 NLRC3Q7RTR2 1065 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 OR52B4Q8NGK2 314 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 SYNPRQ8TBG9 265 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 GPR137Q96N19 417 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 ULBP3Q9BZM4 244 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 C2orf42Q9NWW7 574 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 LRIT1Q9P2V4 623 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 NCDNQ9UBB6 729 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 ING1Q9UK53 422 aaPredicted RBP11.14□□□□□ -0.63
CLIP3-201ENST00000360535 A0A0B4J2E0 115 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 A0A1B0GX12 115 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 TMEM72A0PK05 275 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 M0R233 179 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 NDUFB2O95178 105 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 RLN1P04808 185 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 UCHL1P09936 223 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 TSFMP43897 325 aaKnown RBP11.14□□□□□ -0.63
CLIP3-201ENST00000360535 MMP15P51511 669 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 ZP1P60852 638 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 ACTC1P68032 377 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 ACTA1P68133 377 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 TRAM1Q15629 374 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 GRK1Q15835 563 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 PRICKLE4Q2TBC4 344 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 TMEM240Q5SV17 173 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 LEG1Q6P5S2 330 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 PARM1Q6UWI2 310 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 BTN2A1Q7KYR7 527 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 CSNK1A1LQ8N752 337 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 FGF14Q92915 247 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 RBM18Q96H35 190 aaKnown RBP11.14□□□□□ -0.63
CLIP3-201ENST00000360535 Q96M85 177 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 CFHR5Q9BXR6 569 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 TRPV4Q9HBA0 871 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 HRASLSQ9HDD0 168 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 RDH8Q9NYR8 311 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 ELF5Q9UKW6 265 aaPredicted RBP11.14□□□□□ -0.63
CLIP3-201ENST00000360535 NPFFR2Q9Y5X5 522 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 LTBP2Q14767 1821 aa11.14□□□□□ -0.63
CLIP3-201ENST00000360535 A0A0A6YYC8 382 aaPredicted RBP11.13□□□□□ -0.63
CLIP3-201ENST00000360535 I3L1I5 382 aaPredicted RBP11.13□□□□□ -0.63
CLIP3-201ENST00000360535 GPANK1O95872 356 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 TPOP07202 933 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 TMIGD3P0DMS9 266 aaPredicted RBP11.13□□□□□ -0.63
CLIP3-201ENST00000360535 GALP22466 123 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 SLC2A5P22732 501 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 ZNHIT3Q15649 155 aaPredicted RBP11.13□□□□□ -0.63
CLIP3-201ENST00000360535 TMEM69Q5SWH9 247 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 RPL13AP3Q6NVV1 102 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 SLC22A18Q96BI1 424 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 TCEAL2Q9H3H9 227 aaPredicted RBP11.13□□□□□ -0.63
CLIP3-201ENST00000360535 MKKSQ9NPJ1 570 aaPredicted RBP11.13□□□□□ -0.63
CLIP3-201ENST00000360535 NRIP3Q9NQ35 241 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 INPP5EQ9NRR6 644 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 DUSP22Q9NRW4 184 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 CAMK2AQ9UQM7 478 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 CHURC1-FNTBB4DL54 471 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms