RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 SERTAD2Q14140 314 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 LYPD4Q6UWN0 246 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 NOXA1Q86UR1 476 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 ZNF440Q8IYI8 595 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 GPR135Q8IZ08 494 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 MOSPD2Q8NHP6 518 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 FAM174AQ8TBP5 190 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 TRIM63Q969Q1 353 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 RNF170Q96K19 258 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 PAQR5Q9NXK6 330 aaPredicted RBP19.92■□□□□ 0.78
SHMT1-202ENST00000352886 BOLA1Q9Y3E2 137 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 NPFFR2Q9Y5X5 522 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 TRBV2A0A0J9YWF9 115 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 OIP5O43482 229 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 PRPS1P60891 318 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 TCTE1Q5JU00 501 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 FAM71CQ8NEG0 241 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 PHOSPHO1Q8TCT1 267 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 ABHD1Q96SE0 405 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 GDF15Q99988 308 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 SLC19A3Q9BZV2 496 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 UCK1Q9HA47 277 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 PNO1Q9NRX1 252 aaKnown RBP19.91■□□□□ 0.78
SHMT1-202ENST00000352886 CLEC4AQ9UMR7 237 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 LAMA1P25391 3075 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 TRAV1-2A0A0B4J238 106 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 H0YIG0 161 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 BLOC1S5-TXNDC5H3BN57 136 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 ORC5O43913 435 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 CD38P28907 300 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 GPR176Q14439 515 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 CDK10Q15131 360 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 WBP2NLQ6ICG8 309 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 CBLN3Q6UW01 205 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 OR5H6Q8NGV6 325 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 PTPMT1Q8WUK0 201 aaPredicted RBP19.91■□□□□ 0.78
SHMT1-202ENST00000352886 MSANTD3Q96H12 275 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 OR14A2Q96R54 314 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 PDCD1LG2Q9BQ51 273 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 PELOQ9BRX2 385 aaKnown RBP19.91■□□□□ 0.78
SHMT1-202ENST00000352886 NMNAT2Q9BZQ4 307 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 ZNF576Q9H609 170 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 UBQLN4Q9NRR5 601 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 NCDNQ9UBB6 729 aa19.91■□□□□ 0.78
SHMT1-202ENST00000352886 TEX13CA0A0J9YWL9 993 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 TLCD2A6NGC4 264 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 EEF1E1O43324 174 aaKnown RBP19.9■□□□□ 0.78
SHMT1-202ENST00000352886 SLC43A1O75387 559 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 ATF1P18846 271 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 EDNRAP25101 427 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 PSMB10P40306 273 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 GRK6P43250 576 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 AGFG1P52594 562 aaKnown RBP19.9■□□□□ 0.78
SHMT1-202ENST00000352886 RPS11P62280 158 aaKnown RBP eCLIP19.9■□□□□ 0.78
SHMT1-202ENST00000352886 KCNAB1Q14722 419 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 NDUFA5Q16718 116 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 SLC35D3Q5M8T2 416 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 FNDC7Q5VTL7 733 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 RPL22L1Q6P5R6 122 aaKnown RBP19.9■□□□□ 0.78
SHMT1-202ENST00000352886 C10orf53Q8N6V4 93 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 ZNF527Q8NB42 609 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 GMEB2Q9UKD1 530 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 A0A0B4J203 849 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 C4orf47A7E2U8 309 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 ARL6IP5O75915 188 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 YES1P07947 543 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 UBL4AP11441 157 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 GALNSP34059 522 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 AQP2P41181 271 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 DEFB133Q30KQ1 61 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 NKAIN2Q5VXU1 208 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 OR7G1Q8NGA0 311 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 GFM1Q96RP9 751 aaKnown RBP19.9■□□□□ 0.78
SHMT1-202ENST00000352886 ABCG5Q9H222 651 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 PLSCR3Q9NRY6 295 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 MTCH2Q9Y6C9 303 aa19.9■□□□□ 0.78
SHMT1-202ENST00000352886 MYO15AQ9UKN7 3530 aa19.89■□□□□ 0.78
SHMT1-202ENST00000352886 NOTOA8MTQ0 251 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 A8MUA0 341 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 FAM171A2A8MVW0 826 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 FLRT2O43155 660 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 NDUFB5O43674 189 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 ZNF217O75362 1048 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 SLC6A1P30531 599 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 SLC37A1P57057 533 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 RAB25P57735 213 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 SKP2Q13309 424 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 ISXQ2M1V0 245 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 PYHIN1Q6K0P9 492 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 LEG1Q6P5S2 330 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 ATG4DQ86TL0 474 aaPredicted RBP19.89■□□□□ 0.77
SHMT1-202ENST00000352886 Q96M85 177 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 MOGAT1Q96PD6 335 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 GPX7Q96SL4 187 aaPredicted RBP19.89■□□□□ 0.77
SHMT1-202ENST00000352886 NXF5Q9H1B4 397 aaKnown RBP19.89■□□□□ 0.77
SHMT1-202ENST00000352886 SLC2A4RGQ9NR83 387 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 LANCL2Q9NS86 450 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 VCANP13611 3396 aa19.89■□□□□ 0.77
SHMT1-202ENST00000352886 FITM1A5D6W6 292 aa19.88■□□□□ 0.77
SHMT1-202ENST00000352886 INMT-MINDY4F8WBC2 141 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms