RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 SDHAF3Q9NRP4 125 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 TNFRSF10DQ9UBN6 386 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 KLHL21Q9UJP4 597 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 ZNF229Q9UJW7 825 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 FBXL4Q9UKA2 621 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 EXOGQ9Y2C4 368 aaKnown RBP12.15□□□□□ -0.46
HMGB1-202ENST00000339872 YARS2Q9Y2Z4 477 aaKnown RBP12.15□□□□□ -0.46
HMGB1-202ENST00000339872 EXOSC1Q9Y3B2 195 aaKnown RBP12.15□□□□□ -0.46
HMGB1-202ENST00000339872 PCNX2A6NKB5 2137 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 OTOGLQ3ZCN5 2332 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 EML6Q6ZMW3 1958 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 SLC22A31A6NKX4 558 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 CCRL2O00421 344 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 TP53I11O14683 189 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 BGLAPP02818 100 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 HIST1H2ABP04908 130 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 UQCRC1P31930 480 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 HTR3AP46098 478 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 CLK1P49759 484 aaKnown RBP12.14□□□□□ -0.47
HMGB1-202ENST00000339872 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.14□□□□□ -0.47
HMGB1-202ENST00000339872 SSPNQ14714 243 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 OR2G6Q5TZ20 316 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 OPN5Q6U736 354 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 HIST3H2AQ7L7L0 130 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 OR9Q1Q8NGQ5 310 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 NDNFQ8TB73 568 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 HIST1H2ACQ93077 130 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 KISS1RQ969F8 398 aaPredicted RBP12.14□□□□□ -0.47
HMGB1-202ENST00000339872 SLC25A36Q96CQ1 311 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 RASD2Q96D21 266 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 GPX7Q96SL4 187 aaPredicted RBP12.14□□□□□ -0.47
HMGB1-202ENST00000339872 NPAS1Q99742 590 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 CHCHD2Q9Y6H1 151 aaPredicted RBP12.14□□□□□ -0.47
HMGB1-202ENST00000339872 A8MVM7 634 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 M0R3G1 203 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 TNFSF15O95150 251 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 SCG5P05408 212 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 TGM1P22735 817 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 SSR4P51571 173 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 WNT4P56705 351 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 RPL18Q07020 188 aaKnown RBP12.14□□□□□ -0.47
HMGB1-202ENST00000339872 DNASE1L3Q13609 305 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 PRAMEF20Q5VT98 475 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 GLRX5Q86SX6 157 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 LHFPL3Q86UP9 236 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 RPS19BP1Q86WX3 136 aaKnown RBP12.14□□□□□ -0.47
HMGB1-202ENST00000339872 GHDCQ8N2G8 530 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 SECISBP2Q96T21 854 aaKnown RBP12.14□□□□□ -0.47
HMGB1-202ENST00000339872 PTDSS2Q9BVG9 487 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 OR11A1Q9GZK7 315 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 RACGAP1Q9H0H5 632 aa12.14□□□□□ -0.47
HMGB1-202ENST00000339872 PCSK5Q92824 1860 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 LOC100506127A0A0U1RQW1 187 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 TMEM129A0AVI4 362 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 CCDC182A6NF36 153 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 ARPC3O15145 178 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 F13BP05160 661 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 LIMS3P0CW19 117 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 LIMS4P0CW20 117 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 SLC2A5P22732 501 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 MSX1P28360 303 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 TGFBR1P36897 503 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 DLSTP36957 453 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 ZNF41P51814 821 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-202ENST00000339872 CTXN1P60606 82 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 FOXF1Q12946 379 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 INPP5JQ15735 1006 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-202ENST00000339872 SSX1Q16384 188 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 FAM69AQ5T7M9 428 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 C1orf140Q5VVS0 124 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 PSD4Q8NDX1 1056 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 NLGN4YQ8NFZ3 816 aaPredicted RBP12.13□□□□□ -0.47
HMGB1-202ENST00000339872 NMNAT3Q96T66 252 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 TEAD3Q99594 435 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 OR51E2Q9H255 320 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 PCDHGB6Q9Y5F9 930 aa12.13□□□□□ -0.47
HMGB1-202ENST00000339872 TEX13CA0A0J9YWL9 993 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 NPIPB7O75200 414 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 AHSA1O95433 338 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 HPP00738 406 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 MT-ATP6P00846 226 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 IGHA1P01876 353 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 CD14P08571 375 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 MRPL3P09001 348 aaKnown RBP12.12□□□□□ -0.47
HMGB1-202ENST00000339872 F8A1P23610 371 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 CD79BP40259 229 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 MLLT11Q13015 90 aaPredicted RBP12.12□□□□□ -0.47
HMGB1-202ENST00000339872 ANKDD1AQ495B1 522 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 ARMC4Q5T2S8 1044 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 MAMDC2Q7Z304 686 aaPredicted RBP12.12□□□□□ -0.47
HMGB1-202ENST00000339872 ZBTB46Q86UZ6 589 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 TMEM156Q8N614 296 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 LRRC75AQ8NAA5 344 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 GATAD2BQ8WXI9 593 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 Q96M85 177 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 NDEL1Q9GZM8 345 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 SEC14L4Q9UDX3 406 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 IGLV3-32A0A0A0MS00 114 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 SHISA8B8ZZ34 492 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms