RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 DCDC2BA2VCK2 349 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 EFCAB10A6NFE3 127 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 A8MVM7 634 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 KDM4EB2RXH2 506 aaPredicted RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 H3BML4 177 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SLC30A4O14863 429 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 NKX2-8O15522 239 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SLC25A12O75746 678 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 PTHP01270 115 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 GYPBP06028 91 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 PRKAR1AP10644 381 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 PEPDP12955 493 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 HIST1H1CP16403 213 aaKnown RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 ITGA3P26006 1051 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SHC1P29353 583 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SLC6A6P31641 620 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 GRK5P34947 590 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 RPL4P36578 427 aaKnown RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 ZNF41P51814 821 aaPredicted RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 CDH11P55287 796 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SUMO3P55854 103 aaPredicted RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 GPR85P60893 370 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 ERVK-25P63136 954 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 OC90Q02509 493 aaPredicted RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 RPL18Q07020 188 aaKnown RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 CNPY1Q3B7I2 92 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 C1orf140Q5VVS0 124 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 GPR107Q5VW38 600 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SLC22A10Q63ZE4 541 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SLC6A19Q695T7 634 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 RPL13AP3Q6NVV1 102 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 LINC00696Q6ZRV3 163 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 CXXC5Q7LFL8 322 aaKnown RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 CLVS1Q8IUQ0 354 aaPredicted RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 GALNT15Q8N3T1 639 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 FADS6Q8N9I5 356 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 LRRC75AQ8NAA5 344 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SDR9C7Q8NEX9 313 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 OR4K17Q8NGC6 315 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 OR9Q1Q8NGQ5 310 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 OR13F1Q8NGS4 319 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 OR4K13Q8NH42 304 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 ZPLD1Q8TCW7 415 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 TMEM234Q8WY98 164 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 ST8SIA1Q92185 356 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 PTP4A1Q93096 173 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 MYDGFQ969H8 173 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 KIAA1143Q96AT1 154 aaPredicted RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 NTNG2Q96CW9 530 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 RASD2Q96D21 266 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 LGALS12Q96DT0 336 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 C1GALT1C1Q96EU7 318 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 Q96MT0 163 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 FRMD6Q96NE9 622 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 KATNB1Q9BVA0 655 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 FAM192AQ9GZU8 254 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 FN3KQ9H479 309 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 CPNE5Q9HCH3 593 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 CCNB1IP1Q9NPC3 277 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 CMC2Q9NRP2 79 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SDHAF3Q9NRP4 125 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 DEPPQ9NTK1 212 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 STMN3Q9NZ72 180 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 CHRNA9Q9UGM1 479 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 CLEC2DQ9UHP7 191 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 RPH3AQ9Y2J0 694 aaPredicted RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 HIF3AQ9Y2N7 669 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 PCDHGB1Q9Y5G3 927 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 PINLYPA6NC86 204 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 ARGFXA6NJG6 315 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 A6NL46 340 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 RIIAD1A6NNX1 92 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 ZNF99A8MXY4 864 aaPredicted RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 ETV2O00321 342 aaPredicted RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 PRODHO43272 600 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SEC14L2O76054 403 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 PLGP00747 810 aaPredicted RBP3.74□□□□□ -1.81
MCF2-201ENST00000338585 IGF2P01344 180 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 HMGN1P05114 100 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 ADORA3P0DMS8 318 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 TFPIP10646 304 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SPINK2P20155 84 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 NR4A1P22736 598 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 CD82P27701 267 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 PSMB9P28065 219 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 MSX1P28360 303 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 GRPRP30550 384 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 UQCRC1P31930 480 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 CD96P40200 585 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 ITGADQ13349 1161 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SNTA1Q13424 505 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 IRF3Q14653 427 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 FAM69AQ5T7M9 428 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 MEDAGQ5VYS4 303 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SPINK14Q6IE38 97 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 NIPAL3Q6P499 406 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 NANOGNBQ7Z5D8 188 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 PLCZ1Q86YW0 608 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 KDM8Q8N371 416 aa3.74□□□□□ -1.81
MCF2-201ENST00000338585 SLC37A3Q8NCC5 494 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms