RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 Q6ZTK2 550 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 FAM92BQ6ZTR7 304 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 PGAP1Q75T13 922 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 NT5DC3Q86UY8 548 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 NR2C2APQ86WQ0 139 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 MAP7D3Q8IWC1 876 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF100Q8IYN0 542 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 ATPAF2Q8N5M1 289 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 TEX9Q8N6V9 391 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 GSDMBQ8TAX9 411 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 ASB10Q8WXI3 467 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 GATAD2BQ8WXI9 593 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 MUCL1Q96DR8 90 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 HSH2DQ96JZ2 352 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 KLHL15Q96M94 604 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 C12orf66Q96MD2 445 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 GBP4Q96PP9 640 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 EGFL8Q99944 293 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 SRSF8Q9BRL6 282 aaKnown RBP1.24□□□□□ -2.21
LINC00643-201ENST00000334389 NDUFAF3Q9BU61 184 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 ERVK-6Q9BXR3 956 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 MS4A8Q9BY19 250 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 KRTAP4-3Q9BYR4 195 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 OSBPL8Q9BZF1 889 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 TRIM31Q9BZY9 425 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 HSD3B7Q9H2F3 369 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 TSPY26PQ9H489 355 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 CAAP1Q9H8G2 361 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 MRPS30Q9NP92 439 aaKnown RBP1.24□□□□□ -2.21
LINC00643-201ENST00000334389 DUSP22Q9NRW4 184 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 SLC6A13Q9NSD5 602 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 C20orf96Q9NUD7 363 aaPredicted RBP1.24□□□□□ -2.21
LINC00643-201ENST00000334389 CTTNBP2NLQ9P2B4 639 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 TMEM181Q9P2C4 612 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 UPB1Q9UBR1 384 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 STUB1Q9UNE7 303 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 ERVK-11Q9UQG0 969 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 CARHSP1Q9Y2V2 147 aaKnown RBP1.24□□□□□ -2.21
LINC00643-201ENST00000334389 PKP3Q9Y446 797 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 CLIC4Q9Y696 253 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 CAPN7Q9Y6W3 813 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 KNTC1P50748 2209 aa1.24□□□□□ -2.21
LINC00643-201ENST00000334389 TRBV23OR9-2A0A075B6M9 112 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 IGHV1-18A0A0C4DH31 117 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 BECN2A8MW95 431 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 A8MWP6 167 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 K7ERQ8 282 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 EEF2KO00418 725 aaKnown RBP1.23□□□□□ -2.21
LINC00643-201ENST00000334389 SURF4O15260 269 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 GPR75O95800 540 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 GHRHP01286 108 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 CATP04040 527 aaKnown RBP1.23□□□□□ -2.21
LINC00643-201ENST00000334389 SERPING1P05155 500 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 OR8U9P0C7N5 309 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 INAFM2P0DMQ5 153 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 P0DMU3 169 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 FAM231AP0DMU4 169 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 FAM231CP0DMU5 169 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF43P17038 809 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 PON1P27169 355 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 HOXD3P31249 432 aaPredicted RBP1.23□□□□□ -2.21
LINC00643-201ENST00000334389 THBS4P35443 961 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 HNF4AP41235 474 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 MATR3P43243 847 aaKnown RBP eCLIP1.23□□□□□ -2.21
LINC00643-201ENST00000334389 SLCO1A2P46721 670 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 RGRP47804 291 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 IDH3AP50213 366 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 CCR4P51679 360 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 CLCN7P51798 805 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 CLNS1AP54105 237 aaKnown RBP1.23□□□□□ -2.21
LINC00643-201ENST00000334389 TPI1P60174 286 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 C1orf61Q13536 156 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 CAMK2DQ13557 499 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 SLMAPQ14BN4 828 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 STK38Q15208 465 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 PPP1R3AQ16821 1122 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 PTCHD3Q3KNS1 767 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 PLA1AQ53H76 456 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 TCP11X2Q5H9J9 407 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 SIRPB2Q5JXA9 342 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 RNF220Q5VTB9 566 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 CD200R1LQ6Q8B3 271 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 PPP1R21Q6ZMI0 780 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 Q6ZVL8 140 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 TCF24Q7RTU0 167 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 C6orf120Q7Z4R8 191 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 C20orf196Q8IYI0 205 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 ARHGAP24Q8N264 748 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 OR52H1Q8NGJ2 320 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 DEFB104AQ8WTQ1 72 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 CHPT1Q8WUD6 406 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 UBE2FQ969M7 185 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 LRRC39Q96DD0 335 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 MS4A6EQ96DS6 147 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 MRPL48Q96GC5 212 aaKnown RBP1.23□□□□□ -2.21
LINC00643-201ENST00000334389 MYCBPQ99417 103 aaPredicted RBP1.23□□□□□ -2.21
LINC00643-201ENST00000334389 COQ7Q99807 217 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 TOLLIPQ9H0E2 274 aa1.23□□□□□ -2.21
LINC00643-201ENST00000334389 TSPAN10Q9H1Z9 355 aaPredicted RBP1.23□□□□□ -2.21
LINC00643-201ENST00000334389 OR10A5Q9H207 317 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms