RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 OR9A2Q8NGT5 310 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 OR6K3Q8NGY3 331 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 FIBINQ8TAL6 211 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 ZNRF4Q8WWF5 429 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 CD180Q99467 661 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 ACSS1Q9NUB1 689 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 FBXL3Q9UKT7 428 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 ATG4BQ9Y4P1 393 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 SNRPGP15A8MWD9 76 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 TO15178 435 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 FKTNO75072 461 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 SELLP14151 372 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 EDNRAP25101 427 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 ACADLP28330 430 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 SMAD2Q15796 467 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 PCGF3Q3KNV8 242 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 ZNF547Q8IVP9 402 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 SLC16A11Q8NCK7 471 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 VN1R2Q8NFZ6 395 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 OR4C16Q8NGL9 310 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 UBE2E3Q969T4 207 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 PAWRQ96IZ0 340 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 HS6ST2Q96MM7 605 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 PRSS27Q9BQR3 290 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 ZDHHC5Q9C0B5 715 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 TMEM231Q9H6L2 316 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 NRIP3Q9NQ35 241 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 ZNF275Q9NSD4 429 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 RASL12Q9NYN1 266 aa12.38□□□□□ -0.43
CCDC88C-201ENST00000331194 TTLL8A6PVC2 850 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 SLC25A12O75746 678 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 ACAA1P09110 424 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 ZNF806P0C7X5 589 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 F3P13726 295 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 TYRP14679 529 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 CNR1P21554 472 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 AP3S2P59780 193 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 KCNAB1Q14722 419 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 CDK5R1Q15078 307 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 TRAM1Q15629 374 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 SWI5Q1ZZU3 235 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 C4orf46Q504U0 113 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 NDUFAF7Q7L592 441 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 OVCA2Q8WZ82 227 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 VN1R3Q9BXE9 311 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 TSPAN10Q9H1Z9 355 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 NAP1L6A6NFF2 107 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 SLC22A31A6NKX4 558 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 SULT1C2O00338 296 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 EIF4E2O60573 245 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 POP7O75817 140 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 ARL6IP5O75915 188 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 IL5P05113 134 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 CRYBA1P05813 215 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 CTSLP07711 333 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 H2AFB1P0C5Y9 115 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 NFYBP25208 207 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 POLR2LP62875 67 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 SIRPAP78324 504 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 PWWP2BQ6NUJ5 590 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 RAB11FIP2Q7L804 512 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 TEX19Q8NA77 164 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 OR51S1Q8NGJ8 323 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 SMIM19Q96E16 107 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 FBXO17Q96EF6 278 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 S100A16Q96FQ6 103 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 SLC35A4Q96G79 324 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 CPEB1Q9BZB8 566 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 SLC25A32Q9H2D1 315 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 C2orf42Q9NWW7 574 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 CLDND1Q9NY35 253 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 HS3ST2Q9Y278 367 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 KCNK7Q9Y2U2 307 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 A0A1W2PR48 441 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 OR6C76A6NM76 312 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 ITPKBP27987 946 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 STX4Q12846 297 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 IL10RAQ13651 578 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 SGCAQ16586 387 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 ZNF658BQ4V348 819 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 OR4C11Q6IEV9 310 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 SLC8B1Q6J4K2 584 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 OR2W3Q7Z3T1 314 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 TMEM25Q86YD3 366 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 NUP43Q8NFH3 380 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 OR14A16Q8NHC5 309 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 COL26A1Q96A83 441 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 SEC22AQ96IW7 307 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 KCNK15Q9H427 330 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 ASF1BQ9NVP2 202 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 PCDHB10Q9UN67 800 aa12.37□□□□□ -0.43
CCDC88C-201ENST00000331194 AQP8O94778 261 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 GP1BAP07359 652 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 TYRP1P17643 537 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 HTR2AP28223 471 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 SOX2P48431 317 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 TAS2R20P59543 309 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 GMFBP60983 142 aa12.36□□□□□ -0.43
CCDC88C-201ENST00000331194 OLFML2AQ68BL7 652 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms