RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 DUS3LQ96G46 650 aaKnown RBP16.15■□□□□ 0.18
SYNPO-201ENST00000307662 SEC22CQ9BRL7 303 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 CREBZFQ9NS37 354 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 TTLL8A6PVC2 850 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 PMS2P2O95744 297 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 RBM39Q14498 530 aaKnown RBP16.15■□□□□ 0.18
SYNPO-201ENST00000307662 CTU2Q2VPK5 515 aaKnown RBP16.15■□□□□ 0.18
SYNPO-201ENST00000307662 BCDIN3DQ7Z5W3 292 aaKnown RBP16.15■□□□□ 0.18
SYNPO-201ENST00000307662 EID2Q8N6I1 236 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 OCSTAMPQ9BR26 566 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 AMBRA1Q9C0C7 1298 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 TCRBV5S1A1TA0A578 114 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 HEPACAM2A8MVW5 462 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 FAM227AF5H4B4 570 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 SGK494L7N484 410 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 GFRA2O00451 464 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 SULT1B1O43704 296 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 ELK1P19419 428 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 TAS2R30P59541 319 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 KIR2DS3Q14952 304 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 SSX9Q7RTT3 188 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 PRR22Q8IZ63 422 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 UBE2FQ969M7 185 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 DTD2Q96FN9 168 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 NKX6-2Q9C056 277 aaPredicted RBP16.15■□□□□ 0.18
SYNPO-201ENST00000307662 A4GALTQ9NPC4 353 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 GMEB2Q9UKD1 530 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 MOKQ9UQ07 419 aa16.15■□□□□ 0.18
SYNPO-201ENST00000307662 OR52A4PA6NMU1 304 aa16.14■□□□□ 0.18
SYNPO-201ENST00000307662 ZNF780AO75290 641 aaPredicted RBP16.14■□□□□ 0.18
SYNPO-201ENST00000307662 PIPP12273 146 aaPredicted RBP16.14■□□□□ 0.18
SYNPO-201ENST00000307662 CPMP14384 443 aa16.14■□□□□ 0.18
SYNPO-201ENST00000307662 C17orf99Q6UX52 265 aa16.14■□□□□ 0.18
SYNPO-201ENST00000307662 PRR18Q8N4B5 295 aa16.14■□□□□ 0.18
SYNPO-201ENST00000307662 TEX37Q96LM6 180 aa16.14■□□□□ 0.18
SYNPO-201ENST00000307662 KLF16Q9BXK1 252 aaPredicted RBP16.14■□□□□ 0.18
SYNPO-201ENST00000307662 A0A1W2PPV4 95 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 FURINP09958 794 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 ECH1Q13011 328 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 ZNF542PQ5EBM4 170 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 OR52E1Q8NGJ3 308 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 NXF5Q9H1B4 397 aaKnown RBP16.14■□□□□ 0.17
SYNPO-201ENST00000307662 PIGMQ9H3S5 423 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 SLC6A20Q9NP91 592 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 B4DXG7 233 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 ADAM10O14672 748 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 HBE1P02100 147 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 GPX2P18283 190 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 EFNA3P52797 238 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 SEC61A1P61619 476 aaKnown RBP16.14■□□□□ 0.17
SYNPO-201ENST00000307662 GPR176Q14439 515 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 BAK1Q16611 211 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 KDM8Q8N371 416 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 OR9A4Q8NGU2 314 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 FAM213BQ8TBF2 198 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 TMEM38AQ9H6F2 299 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 CBLCQ9ULV8 474 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 SOCS6O14544 535 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 MSTNO14793 375 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 SCGB2A1O75556 95 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 FLI1Q01543 452 aaPredicted RBP16.14■□□□□ 0.17
SYNPO-201ENST00000307662 SOHLH1Q5JUK2 328 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 CLLU1OSQ5K130 101 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 OR5B2Q96R09 309 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 HMX2A2RU54 273 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 PAPLNO95428 1278 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 ITGB7P26010 798 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 HTR3AP46098 478 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 COX20Q5RI15 118 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 PHYHIPQ92561 330 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 SLC39A13Q96H72 371 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 LURAP1Q96LR2 239 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 FOXN4Q96NZ1 517 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 LPAR4Q99677 370 aa16.14■□□□□ 0.17
SYNPO-201ENST00000307662 SRP9P49458 86 aaKnown RBP16.13■□□□□ 0.17
SYNPO-201ENST00000307662 ACSM1Q08AH1 577 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 LIPIQ6XZB0 460 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 FAM160A2Q8N612 972 aaPredicted RBP16.13■□□□□ 0.17
SYNPO-201ENST00000307662 OR56B1Q8NGI3 324 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 DYNC2LI1Q8TCX1 351 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 ST8SIA4Q92187 359 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 RBMXL1Q96E39 390 aaKnown RBP16.13■□□□□ 0.17
SYNPO-201ENST00000307662 WDR83Q9BRX9 315 aaKnown RBP16.13■□□□□ 0.17
SYNPO-201ENST00000307662 CRB3Q9BUF7 120 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 TUBB1Q9H4B7 451 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 FAM155AB1AL88 458 aaPredicted RBP16.13■□□□□ 0.17
SYNPO-201ENST00000307662 NDUFA6P56556 154 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 RPE65Q16518 533 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 TIGD3Q6B0B8 471 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 SFXN2Q96NB2 322 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 CHRDQ9H2X0 955 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 A0A0J9YY10 115 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 TMEM72A0PK05 275 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 CSF2RAP15509 400 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 TLE4Q04727 773 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 MELKQ14680 651 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 TMEM41BQ5BJD5 291 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 DLEU7Q6UYE1 221 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 ALG12Q9BV10 488 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 SLCO5A1Q9H2Y9 848 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms