RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TVP23CQ96ET8 276 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 LMLNQ96KR4 655 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ZNF251Q9BRH9 671 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 RNF39Q9H2S5 420 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 NMUR1Q9HB89 426 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 IL20RAQ9UHF4 553 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 KCNE1BA0A087WTH5 132 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 TRAV1-2A0A0B4J238 106 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 A0A0D9SG52 128 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 SMLR1H3BR10 107 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 GFRA2O00451 464 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 PPP6CO00743 305 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 HRO43593 1189 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 THBS1P07996 1170 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 AK4P27144 223 aaPredicted RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 VIPR1P32241 457 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 CLCNKAP51800 687 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ARL6IP1Q15041 203 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 SGCBQ16585 318 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.98□□□□□ -1.45
VPS35-201ENST00000299138 ACTBL2Q562R1 376 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 RFPL4BQ6ZWI9 263 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 GAREM2Q75VX8 874 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 PIANPQ8IYJ0 282 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 TMEM145Q8NBT3 493 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR5M8Q8NGP6 311 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 FAM213BQ8TBF2 198 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ZCCHC10Q8TBK6 192 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 APH1BQ8WW43 257 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 IGSF8Q969P0 613 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 SCMH1Q96GD3 660 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 TEX37Q96LM6 180 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 GPR137Q96N19 417 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 GPA33Q99795 319 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ARHGAP9Q9BRR9 750 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ELOVL1Q9BW60 279 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 HDHD5Q9BXW7 423 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 NMNAT2Q9BZQ4 307 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 SUV39H2Q9H5I1 410 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 LUZP4Q9P127 313 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 EPHA6Q9UF33 1036 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 TRBV23OR9-2A0A075B6M9 112 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 SERTM2A0A1B0GWG4 89 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 A0A1W2PPL8 197 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 BTBD17A6NE02 478 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 HMSDA8MTL9 139 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 TCF21O43680 179 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 NFATC1O95644 943 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 RRASP10301 218 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 LAMP1P11279 417 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 CCR9P51686 369 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 RNASE10Q5GAN6 216 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 SFRP5Q5T4F7 317 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 FAM71E1Q6IPT2 247 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ZNF546Q86UE3 836 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ZNF440Q8IYI8 595 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ZBTB44Q8NCP5 570 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ZNF680Q8NEM1 530 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR4N2Q8NGD1 307 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 GLYATL1Q969I3 302 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 TOMM40LQ969M1 308 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 TECTBQ96PL2 329 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 PIGQQ9BRB3 760 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 APMAPQ9HDC9 416 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 IL26Q9NPH9 171 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 GKN1Q9NS71 199 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 BABAM2Q9NXR7 383 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 MRPS33Q9Y291 106 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 M0R2Z0 102 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 SLCO2B1O94956 709 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 CSF1P09603 554 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 GRPRP30550 384 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 ENPP2Q13822 863 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 DOC2AQ14183 400 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 FAM205BPQ63HN1 556 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 C17orf107Q6ZR85 190 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 OVCH1Q7RTY7 1134 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 ZNF547Q8IVP9 402 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 CELF2-AS1Q8N7Q2 184 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 BPIFA2Q96DR5 249 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 LMF1Q96S06 567 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 LDAHQ9H6V9 325 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 PADI3Q9ULW8 664 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 hCG_1807616A0A1W2PRN6 198 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 OR6C76A6NM76 312 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 ARPC1BO15143 372 aaKnown RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 ACTL6BO94805 426 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 CSNK2A2P19784 350 aaPredicted RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 NDUFS1P28331 727 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 TAS2R30P59541 319 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 GTDC1Q4AE62 458 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 FAM124AQ86V42 546 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 PGBD5Q8N414 524 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 KRTCAP2Q8N6L1 136 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 MDGA1Q8NFP4 955 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 OR6N2Q8NGY6 317 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 NDRG1Q92597 394 aaKnown RBP5.97□□□□□ -1.45
VPS35-201ENST00000299138 FAM131CQ96AQ9 280 aa5.97□□□□□ -1.45
VPS35-201ENST00000299138 ARHGDIGQ99819 225 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms