RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 HIST3H2AQ7L7L0 130 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 MAMDC2Q7Z304 686 aaPredicted RBP12.76□□□□□ -0.37
SS18-201ENST00000269137 BCDIN3DQ7Z5W3 292 aaKnown RBP12.76□□□□□ -0.37
SS18-201ENST00000269137 LRRC75AQ8NAA5 344 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 PSD4Q8NDX1 1056 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 OR1J4Q8NGS1 313 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 HIST1H2ACQ93077 130 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 RFKQ969G6 155 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 NXPE2Q96DL1 559 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 POTEKPQ9BYX7 375 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 NDEL1Q9GZM8 345 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 RBM38Q9H0Z9 239 aaKnown RBP12.76□□□□□ -0.37
SS18-201ENST00000269137 MRPS18AQ9NVS2 196 aaKnown RBP12.76□□□□□ -0.37
SS18-201ENST00000269137 ANKRD10Q9NXR5 420 aa12.76□□□□□ -0.37
SS18-201ENST00000269137 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.76□□□□□ -0.37
SS18-201ENST00000269137 TRABD2BA6NFA1 517 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 MCIDASD6RGH6 385 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 SLC2A10O95528 541 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 DBTP11182 482 aaKnown RBP12.75□□□□□ -0.37
SS18-201ENST00000269137 HK1P19367 917 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 SDHBP21912 280 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 FKBP2P26885 142 aaKnown RBP12.75□□□□□ -0.37
SS18-201ENST00000269137 TTKP33981 857 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 CD96P40200 585 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 CASRP41180 1078 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 AQP2P41181 271 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 MASP1P48740 699 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 MLLT10P55197 1068 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 DSCR4P56555 118 aaPredicted RBP12.75□□□□□ -0.37
SS18-201ENST00000269137 PMS2P3Q13401 168 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 MFSD13AQ14CX5 517 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 NEDD8Q15843 81 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 TBC1D25Q3MII6 688 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 CRTC2Q53ET0 693 aaPredicted RBP12.75□□□□□ -0.37
SS18-201ENST00000269137 NXNL2Q5VZ03 156 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 GTF2IRD2BQ6EKJ0 949 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 NANOGNBQ7Z5D8 188 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 GTF2IRD2Q86UP8 949 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 GTPBP8Q8N3Z3 284 aaPredicted RBP12.75□□□□□ -0.37
SS18-201ENST00000269137 STX19Q8N4C7 294 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 MOSPD2Q8NHP6 518 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 TMIGD2Q96BF3 282 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 DDIT4LQ96D03 193 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 OR11A1Q9GZK7 315 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 TIMMDC1Q9NPL8 285 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 HINT3Q9NQE9 182 aaKnown RBP12.75□□□□□ -0.37
SS18-201ENST00000269137 SERINC1Q9NRX5 453 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 SLC6A5Q9Y345 797 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 COMMD3-BMI1R4GMX3 469 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 SPTBN2O15020 2390 aa12.75□□□□□ -0.37
SS18-201ENST00000269137 RIIAD1A6NNX1 92 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 FTCDNL1E5RQL4 147 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 BLOC1S5-TXNDC5H3BN57 136 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 M0R3G1 203 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 EFNA2O43921 213 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 FZD7O75084 574 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 CBR3O75828 277 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 IFNGP01579 166 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 STSP08842 583 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 C21orf33P30042 268 aaPredicted RBP12.74□□□□□ -0.37
SS18-201ENST00000269137 RPL4P36578 427 aaKnown RBP12.74□□□□□ -0.37
SS18-201ENST00000269137 OC90Q02509 493 aaPredicted RBP12.74□□□□□ -0.37
SS18-201ENST00000269137 CLN3Q13286 438 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 SLC35F1Q5T1Q4 408 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 ATP1A1-AS1Q5TC04 95 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 CXXC5Q7LFL8 322 aaKnown RBP12.74□□□□□ -0.37
SS18-201ENST00000269137 GPR141Q7Z602 305 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 CPOQ8IVL8 374 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 GALNT16Q8N428 558 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 MFSD8Q8NHS3 518 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 ZFAND2BQ8WV99 257 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 MUL1Q969V5 352 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 ERMAPQ96PL5 475 aaPredicted RBP12.74□□□□□ -0.37
SS18-201ENST00000269137 UTP23Q9BRU9 249 aaKnown RBP12.74□□□□□ -0.37
SS18-201ENST00000269137 CDCA4Q9BXL8 241 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 LRFN1Q9P244 771 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 KLHL21Q9UJP4 597 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 IER3IP1Q9Y5U9 82 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 SPIN1Q9Y657 262 aaPredicted RBP12.74□□□□□ -0.37
SS18-201ENST00000269137 FREM2Q5SZK8 3169 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 IRGMA1A4Y4 181 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 DCDC2BA2VCK2 349 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 IMPA2O14732 288 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 NKX2-8O15522 239 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 NEURL1O76050 574 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 CD14P08571 375 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 ZNF3P17036 446 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 CNR1P21554 472 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 DPP4P27487 766 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 NOS3P29474 1203 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 CLK1P49759 484 aaKnown RBP12.74□□□□□ -0.37
SS18-201ENST00000269137 RPL18Q07020 188 aaKnown RBP12.74□□□□□ -0.37
SS18-201ENST00000269137 TUBA3CQ13748 450 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 IRF3Q14653 427 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 SGCBQ16585 318 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.74□□□□□ -0.37
SS18-201ENST00000269137 GLYR1Q49A26 553 aaPredicted RBP12.74□□□□□ -0.37
SS18-201ENST00000269137 GXYLT1Q4G148 440 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 KLHL22Q53GT1 634 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 ALG10Q5BKT4 473 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms