RNA–Protein interactions for RNA: ENST00000641756.1

PHGDH-226, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,132 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-226ENST00000641756 TRIM28Q13263 835 aaKnown RBP21.5■■□□□ 1.03
PHGDH-226ENST00000641756 SNRKQ9NRH2 765 aa21.5■■□□□ 1.03
PHGDH-226ENST00000641756 BRPF3Q9ULD4 1205 aa21.5■■□□□ 1.03
PHGDH-226ENST00000641756 MED23Q9ULK4 1368 aa21.5■■□□□ 1.03
PHGDH-226ENST00000641756 DOT1LQ8TEK3 1739 aa21.5■■□□□ 1.03
PHGDH-226ENST00000641756 PCCAP05165 728 aaPredicted RBP21.49■■□□□ 1.03
PHGDH-226ENST00000641756 SKOR2Q2VWA4 1001 aaPredicted RBP21.49■■□□□ 1.03
PHGDH-226ENST00000641756 CREB3L3Q68CJ9 461 aa21.49■■□□□ 1.03
PHGDH-226ENST00000641756 GIGYF2Q6Y7W6 1299 aaKnown RBP21.49■■□□□ 1.03
PHGDH-226ENST00000641756 SYNE4Q8N205 404 aa21.49■■□□□ 1.03
PHGDH-226ENST00000641756 KCNB2Q92953 911 aa21.49■■□□□ 1.03
PHGDH-226ENST00000641756 HAUS7Q99871 368 aa21.49■■□□□ 1.03
PHGDH-226ENST00000641756 SPATA31A1Q5TZJ5 1347 aa21.49■■□□□ 1.03
PHGDH-226ENST00000641756 DDX46Q7L014 1031 aaKnown RBP21.49■■□□□ 1.03
PHGDH-226ENST00000641756 RUFY3Q7L099 469 aa21.49■■□□□ 1.03
PHGDH-226ENST00000641756 CHAMP1Q96JM3 812 aa21.49■■□□□ 1.03
PHGDH-226ENST00000641756 CCDC57Q2TAC2 916 aa21.48■■□□□ 1.03
PHGDH-226ENST00000641756 DDB1Q16531 1140 aa21.47■■□□□ 1.03
PHGDH-226ENST00000641756 ZBTB38Q8NAP3 1195 aaPredicted RBP21.47■■□□□ 1.03
PHGDH-226ENST00000641756 NRAPQ86VF7 1730 aa21.47■■□□□ 1.03
PHGDH-226ENST00000641756 SLC27A2O14975 620 aa21.47■■□□□ 1.03
PHGDH-226ENST00000641756 ZKSCAN1P17029 563 aaPredicted RBP21.47■■□□□ 1.03
PHGDH-226ENST00000641756 PIP4K2BP78356 416 aa21.47■■□□□ 1.03
PHGDH-226ENST00000641756 ACSBG1Q96GR2 724 aa21.47■■□□□ 1.03
PHGDH-226ENST00000641756 GPR108Q9NPR9 543 aa21.47■■□□□ 1.03
PHGDH-226ENST00000641756 ZNF609O15014 1411 aa21.46■■□□□ 1.03
PHGDH-226ENST00000641756 GOLGA6L3A6NEY3 463 aa21.46■■□□□ 1.03
PHGDH-226ENST00000641756 CIAO1O76071 339 aa21.46■■□□□ 1.03
PHGDH-226ENST00000641756 IL27Q8NEV9 243 aa21.46■■□□□ 1.03
PHGDH-226ENST00000641756 ZSWIM6Q9HCJ5 1215 aa21.46■■□□□ 1.03
PHGDH-226ENST00000641756 PDRG1Q9NUG6 133 aa21.46■■□□□ 1.03
PHGDH-226ENST00000641756 LIMCH1Q9UPQ0 1083 aa21.46■■□□□ 1.03
PHGDH-226ENST00000641756 NLRP10Q86W26 655 aa21.46■■□□□ 1.03
PHGDH-226ENST00000641756 CYP46A1Q9Y6A2 500 aa21.46■■□□□ 1.03
PHGDH-226ENST00000641756 A0A1B0GUL7 405 aa21.45■■□□□ 1.02
PHGDH-226ENST00000641756 BRD1O95696 1058 aa21.45■■□□□ 1.02
PHGDH-226ENST00000641756 CCDC129Q6ZRS4 1044 aa21.45■■□□□ 1.02
PHGDH-226ENST00000641756 SEC62Q99442 399 aaKnown RBP21.45■■□□□ 1.02
PHGDH-226ENST00000641756 FSD2A1L4K1 749 aa21.44■■□□□ 1.02
PHGDH-226ENST00000641756 GOLIM4O00461 696 aa21.44■■□□□ 1.02
PHGDH-226ENST00000641756 TAF5LO75529 589 aa21.44■■□□□ 1.02
PHGDH-226ENST00000641756 LARGE1O95461 756 aa21.44■■□□□ 1.02
PHGDH-226ENST00000641756 L1TD1Q5T7N2 865 aaKnown RBP21.44■■□□□ 1.02
PHGDH-226ENST00000641756 CDCA7Q9BWT1 371 aaPredicted RBP21.44■■□□□ 1.02
PHGDH-226ENST00000641756 PLA2G12BQ9BX93 195 aa21.44■■□□□ 1.02
PHGDH-226ENST00000641756 TM6SF1Q9BZW5 370 aa21.44■■□□□ 1.02
PHGDH-226ENST00000641756 TBC1D2BQ9UPU7 963 aa21.44■■□□□ 1.02
PHGDH-226ENST00000641756 DDX49Q9Y6V7 483 aaKnown RBP21.44■■□□□ 1.02
PHGDH-226ENST00000641756 COL9A3Q14050 684 aaPredicted RBP21.44■■□□□ 1.02
PHGDH-226ENST00000641756 LMBRD1Q9NUN5 540 aa21.44■■□□□ 1.02
PHGDH-226ENST00000641756 CEP126Q9P2H0 1117 aa21.44■■□□□ 1.02
PHGDH-226ENST00000641756 TAF6LQ9Y6J9 622 aa21.44■■□□□ 1.02
PHGDH-226ENST00000641756 TAF7LQ5H9L4 462 aa21.43■■□□□ 1.02
PHGDH-226ENST00000641756 VPS53Q5VIR6 699 aa21.43■■□□□ 1.02
PHGDH-226ENST00000641756 THRAP3Q9Y2W1 955 aaKnown RBP21.43■■□□□ 1.02
PHGDH-226ENST00000641756 CSF1RP07333 972 aa21.43■■□□□ 1.02
PHGDH-226ENST00000641756 HSP90AB3PQ58FF7 597 aa21.43■■□□□ 1.02
PHGDH-226ENST00000641756 DZIP3Q86Y13 1208 aaKnown RBP21.43■■□□□ 1.02
PHGDH-226ENST00000641756 MARCH10Q8NA82 808 aaPredicted RBP21.43■■□□□ 1.02
PHGDH-226ENST00000641756 KBTBD3Q8NAB2 608 aa21.43■■□□□ 1.02
PHGDH-226ENST00000641756 PAG1Q9NWQ8 432 aa21.43■■□□□ 1.02
PHGDH-226ENST00000641756 RFX7Q2KHR2 1363 aa21.43■■□□□ 1.02
PHGDH-226ENST00000641756 JCADQ9P266 1359 aa21.43■■□□□ 1.02
PHGDH-226ENST00000641756 SLFNL1Q499Z3 407 aa21.42■■□□□ 1.02
PHGDH-226ENST00000641756 RPAP1Q9BWH6 1393 aaPredicted RBP21.41■■□□□ 1.02
PHGDH-226ENST00000641756 PRPF40AO75400 957 aaKnown RBP21.41■■□□□ 1.02
PHGDH-226ENST00000641756 IFIT5Q13325 482 aaKnown RBP21.41■■□□□ 1.02
PHGDH-226ENST00000641756 RNF20Q5VTR2 975 aa21.41■■□□□ 1.02
PHGDH-226ENST00000641756 CDHR2Q9BYE9 1310 aa21.41■■□□□ 1.02
PHGDH-226ENST00000641756 IFIT1P09914 478 aaKnown RBP21.41■■□□□ 1.02
PHGDH-226ENST00000641756 IL6STP40189 918 aaPredicted RBP21.41■■□□□ 1.02
PHGDH-226ENST00000641756 KLHL40Q2TBA0 621 aa21.41■■□□□ 1.02
PHGDH-226ENST00000641756 ANKRD36CQ5JPF3 1778 aa21.41■■□□□ 1.02
PHGDH-226ENST00000641756 SPATA31A5Q5VU36 1347 aa21.4■■□□□ 1.02
PHGDH-226ENST00000641756 SPATA31A7Q8IWB4 1347 aa21.4■■□□□ 1.02
PHGDH-226ENST00000641756 ADORA1P30542 326 aa21.4■■□□□ 1.02
PHGDH-226ENST00000641756 MCMDC2Q4G0Z9 681 aa21.4■■□□□ 1.02
PHGDH-226ENST00000641756 TRMT112Q9UI30 125 aaKnown RBP21.4■■□□□ 1.02
PHGDH-226ENST00000641756 NUP98P52948 1817 aa21.4■■□□□ 1.02
PHGDH-226ENST00000641756 DTNBO60941 627 aa21.4■■□□□ 1.02
PHGDH-226ENST00000641756 NCLP19338 710 aaKnown RBP21.4■■□□□ 1.02
PHGDH-226ENST00000641756 PSMA5P28066 241 aa21.4■■□□□ 1.02
PHGDH-226ENST00000641756 CCDC83Q8IWF9 413 aa21.4■■□□□ 1.02
PHGDH-226ENST00000641756 TCEANC2Q96MN5 208 aa21.4■■□□□ 1.02
PHGDH-226ENST00000641756 GREM2Q9H772 168 aa21.4■■□□□ 1.02
PHGDH-226ENST00000641756 IRS4O14654 1257 aaPredicted RBP21.39■■□□□ 1.01
PHGDH-226ENST00000641756 XRCC6P12956 609 aaKnown RBP eCLIP21.39■■□□□ 1.015e-6■■□□□ 11.5
PHGDH-226ENST00000641756 TTLL11Q8NHH1 800 aa21.39■■□□□ 1.01
PHGDH-226ENST00000641756 PALLDQ8WX93 1383 aa21.39■■□□□ 1.01
PHGDH-226ENST00000641756 ITGA6P23229 1130 aa21.38■■□□□ 1.01
PHGDH-226ENST00000641756 ATP6V1AP38606 617 aa21.38■■□□□ 1.01
PHGDH-226ENST00000641756 FOXD4L6Q3SYB3 417 aaPredicted RBP21.38■■□□□ 1.01
PHGDH-226ENST00000641756 FOXD4L3Q6VB84 417 aaPredicted RBP21.38■■□□□ 1.01
PHGDH-226ENST00000641756 UBN2Q6ZU65 1347 aa21.38■■□□□ 1.01
PHGDH-226ENST00000641756 CTSWP56202 376 aa21.38■■□□□ 1.01
PHGDH-226ENST00000641756 XAGE2Q96GT9 111 aa21.38■■□□□ 1.01
PHGDH-226ENST00000641756 FBXO3Q9UK99 471 aa21.38■■□□□ 1.01
PHGDH-226ENST00000641756 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.38■■□□□ 1.01
PHGDH-226ENST00000641756 ERVV-1B6SEH8 477 aa21.37■■□□□ 1.01
PHGDH-226ENST00000641756 GORABQ5T7V8 394 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms