RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 SMC3Q9UQE7 1217 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 SPEF2Q9C093 1822 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 WNK3Q9BYP7 1800 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 SMARCA5O60264 1052 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-214ENST00000637038 KCNJ4P48050 445 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 ATP8B2P98198 1209 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 NLGN1Q8N2Q7 840 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 NOL7Q9UMY1 257 aaKnown RBP4.76□□□□□ -1.65
SCN1A-214ENST00000637038 C4AP0C0L4 1744 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 C4BP0C0L5 1744 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 GNAT3A8MTJ3 354 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 FOXO3O43524 673 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 ZKSCAN1P17029 563 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-214ENST00000637038 FLIIQ13045 1269 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 CHMP4CQ96CF2 233 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 KIF1BPQ96EK5 621 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 MYO5AQ9Y4I1 1855 aaKnown RBP4.76□□□□□ -1.65
SCN1A-214ENST00000637038 GOLGA6L4A6NEF3 574 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 CCDC183Q5T5S1 534 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 TMED8Q6PL24 325 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-214ENST00000637038 PRDM4Q9UKN5 801 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 ZKSCAN5Q9Y2L8 839 aa4.76□□□□□ -1.65
SCN1A-214ENST00000637038 SOX12O15370 315 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 ZNF500O60304 480 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-214ENST00000637038 PDCP20941 246 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 CNPY4Q8N129 248 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 SH2B1Q9NRF2 756 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-214ENST00000637038 CLEC11AQ9Y240 323 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 CPDO75976 1380 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 CEMIPQ8WUJ3 1361 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 ADCY9O60503 1353 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 SYCE3A1L190 88 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 TAF7Q15545 349 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-214ENST00000637038 KRT24Q2M2I5 525 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 RNF20Q5VTR2 975 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 SASS6Q6UVJ0 657 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 TOM1L2Q6ZVM7 507 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 OTUD7AQ8TE49 926 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-214ENST00000637038 AK7Q96M32 723 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 STRN4Q9NRL3 753 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 R3HCC1Q9Y3T6 440 aaKnown RBP4.75□□□□□ -1.65
SCN1A-214ENST00000637038 MYH7P12883 1935 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 A0A1W2PPC1 479 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 DYNC1I1O14576 645 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 SURF6O75683 361 aaKnown RBP4.75□□□□□ -1.65
SCN1A-214ENST00000637038 BRD1O95696 1058 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 CHMLP26374 656 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 PSMA5P28066 241 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 CUL4AQ13619 759 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 HDGFL1Q5TGJ6 251 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 FOXD4L5Q5VV16 416 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-214ENST00000637038 FOXD4L4Q8WXT5 416 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-214ENST00000637038 STAP2Q9UGK3 403 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 EXOC6BQ9Y2D4 811 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 PXDNQ92626 1479 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 ARAP2Q8WZ64 1704 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 GLRX3O76003 335 aaKnown RBP4.75□□□□□ -1.65
SCN1A-214ENST00000637038 HOXB7P09629 217 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 EIF5P55010 431 aaKnown RBP4.75□□□□□ -1.65
SCN1A-214ENST00000637038 PKP1Q13835 747 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 NOL8Q76FK4 1167 aaKnown RBP4.75□□□□□ -1.65
SCN1A-214ENST00000637038 CLASRPQ8N2M8 674 aaKnown RBP4.75□□□□□ -1.65
SCN1A-214ENST00000637038 BBXQ8WY36 941 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-214ENST00000637038 KIF3AQ9Y496 699 aa4.75□□□□□ -1.65
SCN1A-214ENST00000637038 IFIT2P09913 472 aaKnown RBP4.74□□□□□ -1.65
SCN1A-214ENST00000637038 LMOD1P29536 600 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-214ENST00000637038 PRIM1P49642 420 aaKnown RBP4.74□□□□□ -1.65
SCN1A-214ENST00000637038 ANKRD1Q15327 319 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 PDLIM2Q96JY6 352 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 LIMCH1Q9UPQ0 1083 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 IGSF1Q8N6C5 1336 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 DDX58O95786 925 aaKnown RBP4.74□□□□□ -1.65
SCN1A-214ENST00000637038 UBE2HP62256 183 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 FOXK2Q01167 660 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 TEFQ10587 303 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 ARHGAP27Q6ZUM4 889 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 ZGPATQ8N5A5 531 aaKnown RBP4.74□□□□□ -1.65
SCN1A-214ENST00000637038 SAGE1Q9NXZ1 904 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 ARIH1Q9Y4X5 557 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-214ENST00000637038 NR2E3Q9Y5X4 410 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 PARP3Q9Y6F1 533 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 TTC41PQ6P2S7 1318 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 TMEM88BA6NKF7 163 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 KIF3CO14782 793 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 NLRP6P59044 892 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 PRIMPOLQ96LW4 560 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 RBSNQ9H1K0 784 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 LRRFIP2Q9Y608 721 aaKnown RBP4.74□□□□□ -1.65
SCN1A-214ENST00000637038 CYP46A1Q9Y6A2 500 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 DOCK2Q92608 1830 aa4.74□□□□□ -1.65
SCN1A-214ENST00000637038 UQCRHLA0A096LP55 91 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 F6X3S4 739 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 UQCRHP07919 91 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 MTHFSDQ2M296 383 aaKnown RBP4.73□□□□□ -1.65
SCN1A-214ENST00000637038 HSP90AB2PQ58FF8 381 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 LDHDQ86WU2 507 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 RNF214Q8ND24 703 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 AKAP11Q9UKA4 1901 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 WDR90Q96KV7 1748 aa4.73□□□□□ -1.65
SCN1A-214ENST00000637038 CCDC192P0DO97 292 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms