RNA–Protein interactions for RNA: ENST00000632758.1

LIMS4-203, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 1,580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-203ENST00000632758 PA2G4Q9UQ80 394 aaKnown RBP18.42■□□□□ 0.54
LIMS4-203ENST00000632758 HMMRO75330 724 aa18.41■□□□□ 0.54
LIMS4-203ENST00000632758 FAM161AQ3B820 660 aa18.41■□□□□ 0.54
LIMS4-203ENST00000632758 NLRP3Q96P20 1036 aa18.41■□□□□ 0.54
LIMS4-203ENST00000632758 HSP90B1P14625 803 aaKnown RBP18.4■□□□□ 0.54
LIMS4-203ENST00000632758 SF3B3Q15393 1217 aaKnown RBP18.4■□□□□ 0.54
LIMS4-203ENST00000632758 KDM2BQ8NHM5 1336 aa18.4■□□□□ 0.54
LIMS4-203ENST00000632758 ZNF594Q96JF6 807 aaPredicted RBP18.39■□□□□ 0.53
LIMS4-203ENST00000632758 DCTPP1Q9H773 170 aa18.39■□□□□ 0.53
LIMS4-203ENST00000632758 SEC31BQ9NQW1 1179 aa18.39■□□□□ 0.53
LIMS4-203ENST00000632758 CASZ1Q86V15 1759 aa18.39■□□□□ 0.53
LIMS4-203ENST00000632758 ITGA6P23229 1130 aa18.38■□□□□ 0.53
LIMS4-203ENST00000632758 PTPN12Q05209 780 aaKnown RBP18.38■□□□□ 0.53
LIMS4-203ENST00000632758 SOCS7O14512 581 aa18.38■□□□□ 0.53
LIMS4-203ENST00000632758 SURF6O75683 361 aaKnown RBP18.38■□□□□ 0.53
LIMS4-203ENST00000632758 CCDC57Q2TAC2 916 aa18.38■□□□□ 0.53
LIMS4-203ENST00000632758 CCDC152Q4G0S7 254 aa18.38■□□□□ 0.53
LIMS4-203ENST00000632758 EXOC6BQ9Y2D4 811 aa18.38■□□□□ 0.53
LIMS4-203ENST00000632758 DDX60Q8IY21 1712 aaKnown RBP18.38■□□□□ 0.53
LIMS4-203ENST00000632758 IFIT5Q13325 482 aaKnown RBP18.37■□□□□ 0.53
LIMS4-203ENST00000632758 BRIP1Q9BX63 1249 aa18.37■□□□□ 0.53
LIMS4-203ENST00000632758 SIL1Q9H173 461 aa18.37■□□□□ 0.53
LIMS4-203ENST00000632758 ANKRD18BA2A2Z9 1011 aa18.36■□□□□ 0.53
LIMS4-203ENST00000632758 CENPQQ7L2Z9 268 aaPredicted RBP18.36■□□□□ 0.53
LIMS4-203ENST00000632758 SMC5Q8IY18 1101 aa18.36■□□□□ 0.53
LIMS4-203ENST00000632758 SGIP1Q9BQI5 828 aa18.36■□□□□ 0.53
LIMS4-203ENST00000632758 COPRSQ9NQ92 184 aa18.36■□□□□ 0.53
LIMS4-203ENST00000632758 KLRG2A4D1S0 409 aaPredicted RBP18.35■□□□□ 0.53
LIMS4-203ENST00000632758 APBB1O00213 710 aa18.35■□□□□ 0.53
LIMS4-203ENST00000632758 NOP58Q9Y2X3 529 aaKnown RBP18.35■□□□□ 0.53
LIMS4-203ENST00000632758 NRXN2Q9P2S2 1712 aa18.35■□□□□ 0.53
LIMS4-203ENST00000632758 POLD1P28340 1107 aa18.34■□□□□ 0.53
LIMS4-203ENST00000632758 PTGER2P43116 358 aa18.34■□□□□ 0.53
LIMS4-203ENST00000632758 GCC1Q96CN9 775 aa18.34■□□□□ 0.53
LIMS4-203ENST00000632758 PUS3Q9BZE2 481 aaKnown RBP18.34■□□□□ 0.53
LIMS4-203ENST00000632758 RIC1Q4ADV7 1423 aa18.34■□□□□ 0.53
LIMS4-203ENST00000632758 CRY2Q49AN0 593 aa18.34■□□□□ 0.53
LIMS4-203ENST00000632758 LRRC24Q50LG9 513 aa18.34■□□□□ 0.53
LIMS4-203ENST00000632758 CELF1Q92879 486 aaKnown RBP18.34■□□□□ 0.53
LIMS4-203ENST00000632758 TNRC6CQ9HCJ0 1690 aaKnown RBP18.33■□□□□ 0.53
LIMS4-203ENST00000632758 RTL9Q8NET4 1388 aa18.33■□□□□ 0.53
LIMS4-203ENST00000632758 TAF7LQ5H9L4 462 aa18.33■□□□□ 0.52
LIMS4-203ENST00000632758 PDE6BP35913 854 aa18.32■□□□□ 0.52
LIMS4-203ENST00000632758 G3BP1Q13283 466 aaKnown RBP eCLIP18.32■□□□□ 0.52
LIMS4-203ENST00000632758 ANKRD45Q5TZF3 282 aa18.32■□□□□ 0.52
LIMS4-203ENST00000632758 DDX46Q7L014 1031 aaKnown RBP18.32■□□□□ 0.52
LIMS4-203ENST00000632758 EYA2O00167 538 aa18.31■□□□□ 0.52
LIMS4-203ENST00000632758 SMARCA5O60264 1052 aaPredicted RBP18.31■□□□□ 0.52
LIMS4-203ENST00000632758 SASH1O94885 1247 aa18.31■□□□□ 0.52
LIMS4-203ENST00000632758 LDHAL6AQ6ZMR3 332 aa18.31■□□□□ 0.52
LIMS4-203ENST00000632758 ATG9AQ7Z3C6 839 aa18.31■□□□□ 0.52
LIMS4-203ENST00000632758 SKAP1Q86WV1 359 aa18.31■□□□□ 0.52
LIMS4-203ENST00000632758 RPGRQ92834 1020 aaKnown RBP18.31■□□□□ 0.52
LIMS4-203ENST00000632758 BCL11AQ9H165 835 aa18.31■□□□□ 0.52
LIMS4-203ENST00000632758 PDZRN3Q9UPQ7 1066 aa18.31■□□□□ 0.52
LIMS4-203ENST00000632758 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.31■□□□□ 0.52
LIMS4-203ENST00000632758 LAMB2P55268 1798 aa18.31■□□□□ 0.52
LIMS4-203ENST00000632758 COL4A1P02462 1669 aa18.31■□□□□ 0.52
LIMS4-203ENST00000632758 SRGNP10124 158 aa18.3■□□□□ 0.52
LIMS4-203ENST00000632758 CHRNA5P30532 468 aa18.3■□□□□ 0.52
LIMS4-203ENST00000632758 OS9Q13438 667 aaPredicted RBP18.3■□□□□ 0.52
LIMS4-203ENST00000632758 HOXA10P31260 410 aaPredicted RBP18.3■□□□□ 0.52
LIMS4-203ENST00000632758 RPS8P62241 208 aaKnown RBP18.3■□□□□ 0.52
LIMS4-203ENST00000632758 C2CD5Q86YS7 1000 aa18.3■□□□□ 0.52
LIMS4-203ENST00000632758 ANKRD18AQ8IVF6 992 aa18.3■□□□□ 0.52
LIMS4-203ENST00000632758 RBM17Q96I25 401 aaKnown RBP18.3■□□□□ 0.52
LIMS4-203ENST00000632758 CDC5LQ99459 802 aaKnown RBP18.3■□□□□ 0.52
LIMS4-203ENST00000632758 SPON1Q9HCB6 807 aa18.3■□□□□ 0.52
LIMS4-203ENST00000632758 RIPOR2Q9Y4F9 1068 aa18.3■□□□□ 0.52
LIMS4-203ENST00000632758 C10orf71Q711Q0 1435 aa18.29■□□□□ 0.52
LIMS4-203ENST00000632758 RAB11FIP3O75154 756 aa18.29■□□□□ 0.52
LIMS4-203ENST00000632758 IGHMBP2P38935 993 aaKnown RBP18.29■□□□□ 0.52
LIMS4-203ENST00000632758 NUCB1Q02818 461 aa18.29■□□□□ 0.52
LIMS4-203ENST00000632758 HSP90AB4PQ58FF6 505 aa18.29■□□□□ 0.52
LIMS4-203ENST00000632758 RHPN1Q8TCX5 695 aa18.29■□□□□ 0.52
LIMS4-203ENST00000632758 MPHOSPH8Q99549 860 aa18.29■□□□□ 0.52
LIMS4-203ENST00000632758 IL1RAPL2Q9NP60 686 aa18.29■□□□□ 0.52
LIMS4-203ENST00000632758 CNNM1Q9NRU3 951 aa18.29■□□□□ 0.52
LIMS4-203ENST00000632758 MYH3P11055 1940 aa18.28■□□□□ 0.52
LIMS4-203ENST00000632758 ANKRD31Q8N7Z5 1873 aa18.28■□□□□ 0.52
LIMS4-203ENST00000632758 H0YIN7 160 aa18.28■□□□□ 0.52
LIMS4-203ENST00000632758 CIAO1O76071 339 aa18.28■□□□□ 0.52
LIMS4-203ENST00000632758 GRAPQ13588 217 aa18.28■□□□□ 0.52
LIMS4-203ENST00000632758 SLC51AQ86UW1 340 aa18.28■□□□□ 0.52
LIMS4-203ENST00000632758 GRAPLQ8TC17 118 aaPredicted RBP18.28■□□□□ 0.52
LIMS4-203ENST00000632758 LRRCC1Q9C099 1032 aa18.28■□□□□ 0.52
LIMS4-203ENST00000632758 LNPKQ9C0E8 428 aa18.28■□□□□ 0.52
LIMS4-203ENST00000632758 NPR1P16066 1061 aa18.27■□□□□ 0.52
LIMS4-203ENST00000632758 IL15P40933 162 aaPredicted RBP18.27■□□□□ 0.52
LIMS4-203ENST00000632758 TFCP2Q12800 502 aa18.27■□□□□ 0.52
LIMS4-203ENST00000632758 CHD1LQ86WJ1 897 aa18.27■□□□□ 0.52
LIMS4-203ENST00000632758 C16orf71Q8IYS4 520 aaPredicted RBP18.27■□□□□ 0.52
LIMS4-203ENST00000632758 ZNF622Q969S3 477 aaKnown RBP eCLIP18.27■□□□□ 0.52
LIMS4-203ENST00000632758 KIF1BPQ96EK5 621 aa18.27■□□□□ 0.52
LIMS4-203ENST00000632758 MASTLQ96GX5 879 aa18.27■□□□□ 0.52
LIMS4-203ENST00000632758 CRAMP1Q96RY5 1269 aa18.27■□□□□ 0.52
LIMS4-203ENST00000632758 PPP1R1BQ9UD71 204 aaPredicted RBP18.27■□□□□ 0.52
LIMS4-203ENST00000632758 FBXO3Q9UK99 471 aa18.27■□□□□ 0.52
LIMS4-203ENST00000632758 A0A0G2JLW4 131 aa18.26■□□□□ 0.51
LIMS4-203ENST00000632758 BSDC1Q9NW68 430 aaPredicted RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms