RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	SHISA8	B8ZZ34	492 aa		5.76	□□□□□ -1.49
CNOT1-223	ENST00000628857	RNF225	M0QZC1	329 aa	Predicted RBP	5.76	□□□□□ -1.49
CNOT1-223	ENST00000628857	SCNN1A	P37088	669 aa		5.76	□□□□□ -1.49
CNOT1-223	ENST00000628857	NRL	P54845	237 aa		5.76	□□□□□ -1.49
CNOT1-223	ENST00000628857	MARS	P56192	900 aa	Known RBP	5.76	□□□□□ -1.49
CNOT1-223	ENST00000628857	ALYREF	Q86V81	257 aa	Known RBP	5.76	□□□□□ -1.49
CNOT1-223	ENST00000628857	TTC9	Q92623	222 aa		5.76	□□□□□ -1.49
CNOT1-223	ENST00000628857	CITED4	Q96RK1	184 aa		5.76	□□□□□ -1.49
CNOT1-223	ENST00000628857	TLR7	Q9NYK1	1049 aa	Known RBP	5.76	□□□□□ -1.49
CNOT1-223	ENST00000628857	PHF20L1	A8MW92	1017 aa		5.75	□□□□□ -1.49
CNOT1-223	ENST00000628857	HOXB4	P17483	251 aa	Predicted RBP	5.75	□□□□□ -1.49
CNOT1-223	ENST00000628857	NFKB1	P19838	968 aa		5.75	□□□□□ -1.49
CNOT1-223	ENST00000628857	MPST	P25325	297 aa		5.75	□□□□□ -1.49
CNOT1-223	ENST00000628857	TARS	P26639	723 aa	Known RBP	5.75	□□□□□ -1.49
CNOT1-223	ENST00000628857	ADH7	P40394	386 aa		5.75	□□□□□ -1.49
CNOT1-223	ENST00000628857	GPLD1	P80108	840 aa		5.75	□□□□□ -1.49
CNOT1-223	ENST00000628857	KCNMA1	Q12791	1236 aa		5.75	□□□□□ -1.49
CNOT1-223	ENST00000628857	ECM1	Q16610	540 aa		5.75	□□□□□ -1.49
CNOT1-223	ENST00000628857	CHSY3	Q70JA7	882 aa		5.75	□□□□□ -1.49
CNOT1-223	ENST00000628857	GPR152	Q8TDT2	470 aa		5.75	□□□□□ -1.49
CNOT1-223	ENST00000628857	FRRS1L	Q9P0K9	344 aa		5.75	□□□□□ -1.49
CNOT1-223	ENST00000628857	ZFAT	Q9P243	1243 aa		5.75	□□□□□ -1.49
CNOT1-223	ENST00000628857	UBAP1L	F5GYI3	381 aa		5.74	□□□□□ -1.49
CNOT1-223	ENST00000628857	SASH3	O75995	380 aa		5.74	□□□□□ -1.49
CNOT1-223	ENST00000628857	ABL1	P00519	1130 aa		5.74	□□□□□ -1.49
CNOT1-223	ENST00000628857	RARA	P10276	462 aa		5.74	□□□□□ -1.49
CNOT1-223	ENST00000628857	DGKG	P49619	791 aa		5.74	□□□□□ -1.49
CNOT1-223	ENST00000628857	C20orf204	Q6ZNR8	217 aa		5.74	□□□□□ -1.49
CNOT1-223	ENST00000628857	DHX32	Q7L7V1	743 aa	Known RBP	5.74	□□□□□ -1.49
CNOT1-223	ENST00000628857	PODN	Q7Z5L7	613 aa		5.74	□□□□□ -1.49
CNOT1-223	ENST00000628857	PMEPA1	Q969W9	287 aa		5.74	□□□□□ -1.49
CNOT1-223	ENST00000628857	NUDT16	Q96DE0	195 aa	Known RBP	5.74	□□□□□ -1.49
CNOT1-223	ENST00000628857	MKL2	Q9ULH7	1088 aa		5.74	□□□□□ -1.49
CNOT1-223	ENST00000628857	PDGFA	P04085	211 aa		5.73	□□□□□ -1.49
CNOT1-223	ENST00000628857	PSAP	P07602	524 aa		5.73	□□□□□ -1.49
CNOT1-223	ENST00000628857	PDIA4	P13667	645 aa	Known RBP	5.73	□□□□□ -1.49
CNOT1-223	ENST00000628857	SERPINB4	P48594	390 aa		5.73	□□□□□ -1.49
CNOT1-223	ENST00000628857	PLAUR	Q03405	335 aa		5.73	□□□□□ -1.49
CNOT1-223	ENST00000628857	TRIP4	Q15650	581 aa	Predicted RBP	5.73	□□□□□ -1.49
CNOT1-223	ENST00000628857	LINC00114	Q6XXX2	140 aa		5.73	□□□□□ -1.49
CNOT1-223	ENST00000628857	GLYCTK	Q8IVS8	523 aa		5.73	□□□□□ -1.49
CNOT1-223	ENST00000628857	KCTD17	Q8N5Z5	321 aa		5.73	□□□□□ -1.49
CNOT1-223	ENST00000628857	TTC16	Q8NEE8	873 aa		5.73	□□□□□ -1.49
CNOT1-223	ENST00000628857	OR13H1	Q8NG92	308 aa		5.73	□□□□□ -1.49
CNOT1-223	ENST00000628857	EDEM1	Q92611	657 aa		5.73	□□□□□ -1.49
CNOT1-223	ENST00000628857	DNAJB12	Q9NXW2	375 aa	Known RBP	5.73	□□□□□ -1.49
CNOT1-223	ENST00000628857	SOWAHD	A6NJG2	315 aa		5.72	□□□□□ -1.49
CNOT1-223	ENST00000628857	FZD6	O60353	706 aa		5.72	□□□□□ -1.49
CNOT1-223	ENST00000628857	MMP20	O60882	483 aa		5.72	□□□□□ -1.49
CNOT1-223	ENST00000628857	AMPD1	P23109	780 aa		5.72	□□□□□ -1.49
CNOT1-223	ENST00000628857	ARHGAP4	P98171	946 aa		5.72	□□□□□ -1.49
CNOT1-223	ENST00000628857	GJD3	Q8N144	294 aa		5.72	□□□□□ -1.49
CNOT1-223	ENST00000628857	CACTIN-AS1	Q8N1I8	211 aa		5.72	□□□□□ -1.49
CNOT1-223	ENST00000628857	MICALL1	Q8N3F8	863 aa		5.72	□□□□□ -1.49
CNOT1-223	ENST00000628857	UBE2O	Q9C0C9	1292 aa	Known RBP	5.72	□□□□□ -1.49
CNOT1-223	ENST00000628857	ABI2	Q9NYB9	513 aa	Predicted RBP	5.72	□□□□□ -1.49
CNOT1-223	ENST00000628857	SLC6A14	Q9UN76	642 aa		5.72	□□□□□ -1.49
CNOT1-223	ENST00000628857	USP20	Q9Y2K6	914 aa		5.72	□□□□□ -1.49
CNOT1-223	ENST00000628857	ZBTB42	B2RXF5	422 aa		5.71	□□□□□ -1.5
CNOT1-223	ENST00000628857	GNB5	O14775	395 aa		5.71	□□□□□ -1.5
CNOT1-223	ENST00000628857	DNM1	Q05193	864 aa	Known RBP	5.71	□□□□□ -1.5
CNOT1-223	ENST00000628857	PDE3B	Q13370	1112 aa		5.71	□□□□□ -1.5
CNOT1-223	ENST00000628857	MTMR3	Q13615	1198 aa		5.71	□□□□□ -1.5
CNOT1-223	ENST00000628857	TTC39B	Q5VTQ0	682 aa	Predicted RBP	5.71	□□□□□ -1.5
CNOT1-223	ENST00000628857	ILDR2	Q71H61	639 aa		5.71	□□□□□ -1.5
CNOT1-223	ENST00000628857	RAB44	Q7Z6P3	723 aa	Predicted RBP	5.71	□□□□□ -1.5
CNOT1-223	ENST00000628857	ATCAY	Q86WG3	371 aa		5.71	□□□□□ -1.5
CNOT1-223	ENST00000628857	ELP3	Q9H9T3	547 aa		5.71	□□□□□ -1.5
CNOT1-223	ENST00000628857	NOP53	Q9NZM5	478 aa	Known RBP	5.71	□□□□□ -1.5
CNOT1-223	ENST00000628857	POLI	Q9UNA4	740 aa		5.71	□□□□□ -1.5
CNOT1-223	ENST00000628857	STARD13	Q9Y3M8	1113 aa		5.71	□□□□□ -1.5
CNOT1-223	ENST00000628857	LOC102724428	A0A0B4J2F2	783 aa		5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857	SPDYE3	A6NKU9	549 aa		5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857		H3BRB1	525 aa		5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857	LILRB5	O75023	590 aa		5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857	KIF4A	O95239	1232 aa		5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857	NEFL	P07196	543 aa		5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857	SIK1	P57059	783 aa		5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857	SNRPN	P63162	240 aa	Known RBP	5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857	ZNF211	Q13398	564 aa	Predicted RBP	5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857	AAMP	Q13685	434 aa		5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857	ZNF438	Q7Z4V0	828 aa		5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857	RBCK1	Q9BYM8	510 aa		5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857	GGNBP2	Q9H3C7	697 aa		5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857	TUT1	Q9H6E5	874 aa	Known RBP	5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857	BRPF3	Q9ULD4	1205 aa		5.7	□□□□□ -1.5
CNOT1-223	ENST00000628857		M0R082	166 aa		5.69	□□□□□ -1.5
CNOT1-223	ENST00000628857	NDUFB5	O43674	189 aa		5.69	□□□□□ -1.5
CNOT1-223	ENST00000628857	HYAL2	Q12891	473 aa		5.69	□□□□□ -1.5
CNOT1-223	ENST00000628857	COL9A3	Q14050	684 aa	Predicted RBP	5.69	□□□□□ -1.5
CNOT1-223	ENST00000628857	KRT25	Q7Z3Z0	450 aa		5.69	□□□□□ -1.5
CNOT1-223	ENST00000628857	ZNF417	Q8TAU3	575 aa		5.69	□□□□□ -1.5
CNOT1-223	ENST00000628857	ZNF587	Q96SQ5	575 aa	Predicted RBP	5.69	□□□□□ -1.5
CNOT1-223	ENST00000628857	RBSN	Q9H1K0	784 aa		5.69	□□□□□ -1.5
CNOT1-223	ENST00000628857	RRAGC	Q9HB90	399 aa		5.69	□□□□□ -1.5
CNOT1-223	ENST00000628857	CNTNAP5	Q8WYK1	1306 aa		5.69	□□□□□ -1.5
CNOT1-223	ENST00000628857	RGS9	O75916	674 aa	Predicted RBP	5.68	□□□□□ -1.5
CNOT1-223	ENST00000628857	ALB	P02768	609 aa		5.68	□□□□□ -1.5
CNOT1-223	ENST00000628857	GSK3A	P49840	483 aa		5.68	□□□□□ -1.5
CNOT1-223	ENST00000628857	FAM35A	Q86V20	835 aa		5.68	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms