RNA–Protein interactions for RNA: ENST00000628496.2

SOX2-OT-248, SOX2 overlapping transcript, humanhuman

TSL 5

Gene SOX2-OT, Length 801 nt, Biotype sense overlapping.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-OT-248ENST00000628496 CCDC93Q567U6 631 aa17.23■□□□□ 0.35
SOX2-OT-248ENST00000628496 SOGA3Q5TF21 947 aa17.23■□□□□ 0.35
SOX2-OT-248ENST00000628496 DDX46Q7L014 1031 aaKnown RBP17.23■□□□□ 0.35
SOX2-OT-248ENST00000628496 SRCIN1Q9C0H9 1055 aa17.23■□□□□ 0.35
SOX2-OT-248ENST00000628496 COL4A1P02462 1669 aa17.23■□□□□ 0.35
SOX2-OT-248ENST00000628496 BCAR3O75815 825 aa17.22■□□□□ 0.35
SOX2-OT-248ENST00000628496 CTSWP56202 376 aa17.22■□□□□ 0.35
SOX2-OT-248ENST00000628496 GRAPQ13588 217 aa17.22■□□□□ 0.35
SOX2-OT-248ENST00000628496 C9orf131Q5VYM1 1079 aa17.22■□□□□ 0.35
SOX2-OT-248ENST00000628496 GRAPLQ8TC17 118 aaPredicted RBP17.22■□□□□ 0.35
SOX2-OT-248ENST00000628496 FOXD4L1Q9NU39 408 aa17.22■□□□□ 0.35
SOX2-OT-248ENST00000628496 LTBP3Q9NS15 1303 aa17.21■□□□□ 0.35
SOX2-OT-248ENST00000628496 CACNA1SQ13698 1873 aa17.21■□□□□ 0.35
SOX2-OT-248ENST00000628496 CELF1Q92879 486 aaKnown RBP17.21■□□□□ 0.35
SOX2-OT-248ENST00000628496 CCDC85AQ96PX6 553 aaPredicted RBP17.21■□□□□ 0.35
SOX2-OT-248ENST00000628496 KIF16BQ96L93 1317 aa17.21■□□□□ 0.34
SOX2-OT-248ENST00000628496 GRM8O00222 908 aa17.2■□□□□ 0.34
SOX2-OT-248ENST00000628496 BBOX1O75936 387 aa17.2■□□□□ 0.34
SOX2-OT-248ENST00000628496 LMNB1P20700 586 aa17.2■□□□□ 0.34
SOX2-OT-248ENST00000628496 CCDC152Q4G0S7 254 aa17.2■□□□□ 0.34
SOX2-OT-248ENST00000628496 TTLL11Q8NHH1 800 aa17.2■□□□□ 0.34
SOX2-OT-248ENST00000628496 PLA2G12BQ9BX93 195 aa17.2■□□□□ 0.34
SOX2-OT-248ENST00000628496 TAOK3Q9H2K8 898 aa17.2■□□□□ 0.34
SOX2-OT-248ENST00000628496 SEC31BQ9NQW1 1179 aa17.2■□□□□ 0.34
SOX2-OT-248ENST00000628496 RNF181Q9P0P0 153 aa17.2■□□□□ 0.34
SOX2-OT-248ENST00000628496 ATP6V0A2Q9Y487 856 aa17.2■□□□□ 0.34
SOX2-OT-248ENST00000628496 RTKN2Q8IZC4 609 aa17.19■□□□□ 0.34
SOX2-OT-248ENST00000628496 CHD4Q14839 1912 aa17.19■□□□□ 0.34
SOX2-OT-248ENST00000628496 FKBP4Q02790 459 aaKnown RBP eCLIP17.18■□□□□ 0.34
SOX2-OT-248ENST00000628496 CC2D2BQ6DHV5 1058 aa17.18■□□□□ 0.34
SOX2-OT-248ENST00000628496 ZNF784Q8NCA9 323 aaPredicted RBP17.18■□□□□ 0.34
SOX2-OT-248ENST00000628496 ARHGAP45Q92619 1136 aa17.18■□□□□ 0.34
SOX2-OT-248ENST00000628496 API5Q9BZZ5 524 aaKnown RBP17.18■□□□□ 0.34
SOX2-OT-248ENST00000628496 GREM2Q9H772 168 aa17.18■□□□□ 0.34
SOX2-OT-248ENST00000628496 C9orf78Q9NZ63 289 aaPredicted RBP17.18■□□□□ 0.34
SOX2-OT-248ENST00000628496 UTYO14607 1347 aa17.18■□□□□ 0.34
SOX2-OT-248ENST00000628496 RTL9Q8NET4 1388 aa17.17■□□□□ 0.34
SOX2-OT-248ENST00000628496 NBPF7P0C2Y1 421 aaPredicted RBP17.17■□□□□ 0.34
SOX2-OT-248ENST00000628496 FOXO4P98177 505 aa17.17■□□□□ 0.34
SOX2-OT-248ENST00000628496 FER1L6Q2WGJ9 1857 aa17.17■□□□□ 0.34
SOX2-OT-248ENST00000628496 SP8Q8IXZ3 490 aa17.17■□□□□ 0.34
SOX2-OT-248ENST00000628496 CSF1RP07333 972 aa17.16■□□□□ 0.34
SOX2-OT-248ENST00000628496 TRIM27P14373 513 aa17.16■□□□□ 0.34
SOX2-OT-248ENST00000628496 RPS8P62241 208 aaKnown RBP17.16■□□□□ 0.34
SOX2-OT-248ENST00000628496 EPHA10Q5JZY3 1008 aa17.16■□□□□ 0.34
SOX2-OT-248ENST00000628496 TMC4Q7Z404 712 aa17.16■□□□□ 0.34
SOX2-OT-248ENST00000628496 FRAT1Q92837 279 aaPredicted RBP17.16■□□□□ 0.34
SOX2-OT-248ENST00000628496 SUCLG2Q96I99 432 aa17.16■□□□□ 0.34
SOX2-OT-248ENST00000628496 PSMD1Q99460 953 aa17.16■□□□□ 0.34
SOX2-OT-248ENST00000628496 ZNF277Q9NRM2 450 aaPredicted RBP17.16■□□□□ 0.34
SOX2-OT-248ENST00000628496 TNNQ9UQP3 1299 aa17.16■□□□□ 0.34
SOX2-OT-248ENST00000628496 CCT4P50991 539 aaKnown RBP17.15■□□□□ 0.34
SOX2-OT-248ENST00000628496 FAM161AQ3B820 660 aa17.15■□□□□ 0.34
SOX2-OT-248ENST00000628496 GRIPAP1Q4V328 841 aa17.15■□□□□ 0.34
SOX2-OT-248ENST00000628496 KAZALD1Q96I82 304 aa17.15■□□□□ 0.34
SOX2-OT-248ENST00000628496 USP44Q9H0E7 712 aa17.15■□□□□ 0.34
SOX2-OT-248ENST00000628496 IPO8O15397 1037 aaKnown RBP17.14■□□□□ 0.33
SOX2-OT-248ENST00000628496 ATF7IPQ6VMQ6 1270 aa17.14■□□□□ 0.33
SOX2-OT-248ENST00000628496 YTHDC1Q96MU7 727 aaKnown RBP17.14■□□□□ 0.33
SOX2-OT-248ENST00000628496 LRRC37AA6NMS7 1700 aa17.13■□□□□ 0.33
SOX2-OT-248ENST00000628496 ITGA6P23229 1130 aa17.13■□□□□ 0.33
SOX2-OT-248ENST00000628496 ANKRD18AQ8IVF6 992 aa17.13■□□□□ 0.33
SOX2-OT-248ENST00000628496 CDC5LQ99459 802 aaKnown RBP17.13■□□□□ 0.33
SOX2-OT-248ENST00000628496 RTFDC1Q9BY42 306 aaPredicted RBP17.13■□□□□ 0.33
SOX2-OT-248ENST00000628496 TMX4Q9H1E5 349 aaPredicted RBP17.13■□□□□ 0.33
SOX2-OT-248ENST00000628496 TAF1P21675 1872 aa17.13■□□□□ 0.33
SOX2-OT-248ENST00000628496 DUOX1Q9NRD9 1551 aa17.12■□□□□ 0.33
SOX2-OT-248ENST00000628496 IARSP41252 1262 aaKnown RBP17.12■□□□□ 0.33
SOX2-OT-248ENST00000628496 ZKSCAN2Q63HK3 967 aa17.12■□□□□ 0.33
SOX2-OT-248ENST00000628496 LMBR1LQ6UX01 489 aa17.12■□□□□ 0.33
SOX2-OT-248ENST00000628496 DPP8Q6V1X1 898 aaPredicted RBP17.12■□□□□ 0.33
SOX2-OT-248ENST00000628496 MPNDQ8N594 471 aa17.12■□□□□ 0.33
SOX2-OT-248ENST00000628496 ZC3H4Q9UPT8 1303 aaKnown RBP17.12■□□□□ 0.33
SOX2-OT-248ENST00000628496 SBF1O95248 1867 aa17.12■□□□□ 0.33
SOX2-OT-248ENST00000628496 COL4A5P29400 1685 aa17.11■□□□□ 0.33
SOX2-OT-248ENST00000628496 GPSM2P81274 684 aa17.11■□□□□ 0.33
SOX2-OT-248ENST00000628496 INTS3Q68E01 1043 aaKnown RBP17.11■□□□□ 0.33
SOX2-OT-248ENST00000628496 ZNF526Q8TF50 670 aaPredicted RBP17.11■□□□□ 0.33
SOX2-OT-248ENST00000628496 CLUAP1Q96AJ1 413 aa17.11■□□□□ 0.33
SOX2-OT-248ENST00000628496 BICC1Q9H694 974 aaKnown RBP17.11■□□□□ 0.33
SOX2-OT-248ENST00000628496 ANKRD44Q8N8A2 993 aa17.1■□□□□ 0.33
SOX2-OT-248ENST00000628496 NSFL1CQ9UNZ2 370 aaKnown RBP17.1■□□□□ 0.33
SOX2-OT-248ENST00000628496 CHMP3Q9Y3E7 222 aa17.1■□□□□ 0.33
SOX2-OT-248ENST00000628496 TIAM2Q8IVF5 1701 aa17.1■□□□□ 0.33
SOX2-OT-248ENST00000628496 RABL6Q3YEC7 729 aaPredicted RBP17.09■□□□□ 0.33
SOX2-OT-248ENST00000628496 MEIS3Q99687 375 aa17.09■□□□□ 0.33
SOX2-OT-248ENST00000628496 BSDC1Q9NW68 430 aaPredicted RBP17.09■□□□□ 0.33
SOX2-OT-248ENST00000628496 LTBP1Q14766 1721 aa17.09■□□□□ 0.33
SOX2-OT-248ENST00000628496 MYH3P11055 1940 aa17.08■□□□□ 0.33
SOX2-OT-248ENST00000628496 ANKRD18BA2A2Z9 1011 aa17.08■□□□□ 0.32
SOX2-OT-248ENST00000628496 IGHMBP2P38935 993 aaKnown RBP17.08■□□□□ 0.32
SOX2-OT-248ENST00000628496 IFIT5Q13325 482 aaKnown RBP17.08■□□□□ 0.32
SOX2-OT-248ENST00000628496 AOC3Q16853 763 aa17.08■□□□□ 0.32
SOX2-OT-248ENST00000628496 TMEM57Q8N5G2 664 aa17.08■□□□□ 0.32
SOX2-OT-248ENST00000628496 SUPT20HQ8NEM7 779 aa17.08■□□□□ 0.32
SOX2-OT-248ENST00000628496 PODXL2Q9NZ53 605 aa17.08■□□□□ 0.32
SOX2-OT-248ENST00000628496 POLLQ9UGP5 575 aa17.08■□□□□ 0.32
SOX2-OT-248ENST00000628496 RCAN3Q9UKA8 241 aa17.08■□□□□ 0.32
SOX2-OT-248ENST00000628496 MINPP1Q9UNW1 487 aa17.08■□□□□ 0.32
SOX2-OT-248ENST00000628496 PPIP5K2O43314 1243 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms