RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 ATP6V1AP38606 617 aa26.63■■□□□ 1.85
PNKP-220ENST00000627232 SIK1P57059 783 aa26.63■■□□□ 1.85
PNKP-220ENST00000627232 INTS5Q6P9B9 1019 aaKnown RBP26.63■■□□□ 1.85
PNKP-220ENST00000627232 COL5A3P25940 1745 aaPredicted RBP26.62■■□□□ 1.85
PNKP-220ENST00000627232 LRRC24Q50LG9 513 aa26.62■■□□□ 1.85
PNKP-220ENST00000627232 ZNF34Q8IZ26 560 aa26.62■■□□□ 1.85
PNKP-220ENST00000627232 TNPO1Q92973 898 aaKnown RBP26.62■■□□□ 1.85
PNKP-220ENST00000627232 NGLY1Q96IV0 654 aa26.62■■□□□ 1.85
PNKP-220ENST00000627232 ZNF594Q96JF6 807 aaPredicted RBP26.62■■□□□ 1.85
PNKP-220ENST00000627232 PALLDQ8WX93 1383 aa26.61■■□□□ 1.85
PNKP-220ENST00000627232 FNBP4Q8N3X1 1017 aaPredicted RBP26.61■■□□□ 1.85
PNKP-220ENST00000627232 MED23Q9ULK4 1368 aa26.61■■□□□ 1.85
PNKP-220ENST00000627232 DDX11L8A8MPP1 907 aa26.6■■□□□ 1.85
PNKP-220ENST00000627232 GPTP24298 496 aa26.6■■□□□ 1.85
PNKP-220ENST00000627232 CRKLP46109 303 aaKnown RBP26.6■■□□□ 1.85
PNKP-220ENST00000627232 NUCB2P80303 420 aa26.6■■□□□ 1.85
PNKP-220ENST00000627232 PTH1RQ03431 593 aa26.6■■□□□ 1.85
PNKP-220ENST00000627232 IFIT5Q13325 482 aaKnown RBP26.6■■□□□ 1.85
PNKP-220ENST00000627232 GSE1Q14687 1217 aa26.6■■□□□ 1.85
PNKP-220ENST00000627232 FAM227BQ96M60 508 aa26.6■■□□□ 1.85
PNKP-220ENST00000627232 GBP4Q96PP9 640 aa26.6■■□□□ 1.85
PNKP-220ENST00000627232 CEP126Q9P2H0 1117 aa26.6■■□□□ 1.85
PNKP-220ENST00000627232 SPATA31A6Q5VVP1 1343 aa26.6■■□□□ 1.85
PNKP-220ENST00000627232 CUL4AQ13619 759 aa26.6■■□□□ 1.85
PNKP-220ENST00000627232 TMX3Q96JJ7 454 aa26.6■■□□□ 1.85
PNKP-220ENST00000627232 AKAP2Q9Y2D5 859 aa26.6■■□□□ 1.85
PNKP-220ENST00000627232 CLEC17AQ6ZS10 378 aa26.59■■□□□ 1.85
PNKP-220ENST00000627232 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.59■■□□□ 1.85
PNKP-220ENST00000627232 MAP4K1Q92918 833 aa26.59■■□□□ 1.85
PNKP-220ENST00000627232 AK7Q96M32 723 aa26.59■■□□□ 1.85
PNKP-220ENST00000627232 NEUROD6Q96NK8 337 aa26.59■■□□□ 1.85
PNKP-220ENST00000627232 C8orf37Q96NL8 207 aa26.59■■□□□ 1.85
PNKP-220ENST00000627232 TBC1D2BQ9UPU7 963 aa26.59■■□□□ 1.85
PNKP-220ENST00000627232 MYH14Q7Z406 1995 aaKnown RBP26.58■■□□□ 1.85
PNKP-220ENST00000627232 A0A0D9SFI3 127 aa26.58■■□□□ 1.85
PNKP-220ENST00000627232 A0A0G2JS52 829 aa26.58■■□□□ 1.85
PNKP-220ENST00000627232 CTSWP56202 376 aa26.58■■□□□ 1.85
PNKP-220ENST00000627232 NECTIN1Q15223 517 aa26.58■■□□□ 1.85
PNKP-220ENST00000627232 TTLL11Q8NHH1 800 aa26.58■■□□□ 1.85
PNKP-220ENST00000627232 PUS3Q9BZE2 481 aaKnown RBP26.58■■□□□ 1.85
PNKP-220ENST00000627232 TRMT112Q9UI30 125 aaKnown RBP26.58■■□□□ 1.85
PNKP-220ENST00000627232 IRS4O14654 1257 aaPredicted RBP26.57■■□□□ 1.84
PNKP-220ENST00000627232 PDE8AO60658 829 aa26.57■■□□□ 1.84
PNKP-220ENST00000627232 PTMSP20962 102 aa26.57■■□□□ 1.84
PNKP-220ENST00000627232 ITPK1Q13572 414 aa26.57■■□□□ 1.84
PNKP-220ENST00000627232 FAM98CQ17RN3 349 aaKnown RBP26.57■■□□□ 1.84
PNKP-220ENST00000627232 TAF7LQ5H9L4 462 aa26.57■■□□□ 1.84
PNKP-220ENST00000627232 RASEFQ8IZ41 740 aa26.57■■□□□ 1.84
PNKP-220ENST00000627232 INTS4Q96HW7 963 aaKnown RBP26.57■■□□□ 1.84
PNKP-220ENST00000627232 TM6SF1Q9BZW5 370 aa26.57■■□□□ 1.84
PNKP-220ENST00000627232 A0A1B0GUL7 405 aa26.56■■□□□ 1.84
PNKP-220ENST00000627232 TIMM10P62072 90 aa26.55■■□□□ 1.84
PNKP-220ENST00000627232 KBTBD3Q8NAB2 608 aa26.55■■□□□ 1.84
PNKP-220ENST00000627232 DNAJC2Q99543 621 aaKnown RBP26.55■■□□□ 1.84
PNKP-220ENST00000627232 UPF3BQ9BZI7 483 aaKnown RBP26.55■■□□□ 1.84
PNKP-220ENST00000627232 RBM8AQ9Y5S9 174 aaKnown RBP26.55■■□□□ 1.84
PNKP-220ENST00000627232 THSD7AQ9UPZ6 1657 aa26.55■■□□□ 1.84
PNKP-220ENST00000627232 BCORQ6W2J9 1755 aa26.55■■□□□ 1.84
PNKP-220ENST00000627232 UBN2Q6ZU65 1347 aa26.55■■□□□ 1.84
PNKP-220ENST00000627232 CYP2E1P05181 493 aaPredicted RBP26.55■■□□□ 1.84
PNKP-220ENST00000627232 EDC3Q96F86 508 aaKnown RBP26.55■■□□□ 1.84
PNKP-220ENST00000627232 TTC14Q96N46 770 aa26.55■■□□□ 1.84
PNKP-220ENST00000627232 ANKRD18BA2A2Z9 1011 aa26.54■■□□□ 1.84
PNKP-220ENST00000627232 SYNE4Q8N205 404 aa26.54■■□□□ 1.84
PNKP-220ENST00000627232 ZKSCAN1P17029 563 aaPredicted RBP26.53■■□□□ 1.84
PNKP-220ENST00000627232 PARP10Q53GL7 1025 aa26.53■■□□□ 1.84
PNKP-220ENST00000627232 PRPF40BQ6NWY9 871 aaKnown RBP26.53■■□□□ 1.84
PNKP-220ENST00000627232 LAMB2P55268 1798 aa26.53■■□□□ 1.84
PNKP-220ENST00000627232 KCNQ2O43526 872 aa26.52■■□□□ 1.84
PNKP-220ENST00000627232 CAMTA2O94983 1202 aa26.52■■□□□ 1.84
PNKP-220ENST00000627232 ITGA6P23229 1130 aa26.52■■□□□ 1.84
PNKP-220ENST00000627232 SSFA2P28290 1259 aa26.52■■□□□ 1.84
PNKP-220ENST00000627232 ZGPATQ8N5A5 531 aaKnown RBP26.52■■□□□ 1.84
PNKP-220ENST00000627232 PAG1Q9NWQ8 432 aa26.52■■□□□ 1.84
PNKP-220ENST00000627232 LRP5O75197 1615 aa26.52■■□□□ 1.84
PNKP-220ENST00000627232 RNF20Q5VTR2 975 aa26.51■■□□□ 1.83
PNKP-220ENST00000627232 CREB3L3Q68CJ9 461 aa26.51■■□□□ 1.83
PNKP-220ENST00000627232 GREM2Q9H772 168 aa26.51■■□□□ 1.83
PNKP-220ENST00000627232 ZSWIM6Q9HCJ5 1215 aa26.51■■□□□ 1.83
PNKP-220ENST00000627232 RIPOR2Q9Y4F9 1068 aa26.51■■□□□ 1.83
PNKP-220ENST00000627232 RIC1Q4ADV7 1423 aa26.51■■□□□ 1.83
PNKP-220ENST00000627232 ABCC12Q96J65 1359 aa26.51■■□□□ 1.83
PNKP-220ENST00000627232 IFIT1P09914 478 aaKnown RBP26.5■■□□□ 1.83
PNKP-220ENST00000627232 KCNJ4P48050 445 aa26.5■■□□□ 1.83
PNKP-220ENST00000627232 HMG20BQ9P0W2 317 aa26.5■■□□□ 1.83
PNKP-220ENST00000627232 SH3TC1Q8TE82 1336 aa26.5■■□□□ 1.83
PNKP-220ENST00000627232 TAF5LO75529 589 aa26.49■■□□□ 1.83
PNKP-220ENST00000627232 CCDC158Q5M9N0 1113 aa26.49■■□□□ 1.83
PNKP-220ENST00000627232 USP21Q9UK80 565 aa26.49■■□□□ 1.83
PNKP-220ENST00000627232 NHSQ6T4R5 1651 aa26.49■■□□□ 1.83
PNKP-220ENST00000627232 SLC27A2O14975 620 aa26.49■■□□□ 1.83
PNKP-220ENST00000627232 HSP90B1P14625 803 aaKnown RBP26.49■■□□□ 1.83
PNKP-220ENST00000627232 CASTP20810 708 aaKnown RBP26.49■■□□□ 1.83
PNKP-220ENST00000627232 MCMDC2Q4G0Z9 681 aa26.49■■□□□ 1.83
PNKP-220ENST00000627232 VPS53Q5VIR6 699 aa26.49■■□□□ 1.83
PNKP-220ENST00000627232 USPL1Q5W0Q7 1092 aa26.49■■□□□ 1.83
PNKP-220ENST00000627232 DDX46Q7L014 1031 aaKnown RBP26.49■■□□□ 1.83
PNKP-220ENST00000627232 ZNF589Q86UQ0 364 aaPredicted RBP26.49■■□□□ 1.83
PNKP-220ENST00000627232 CCDC85AQ96PX6 553 aaPredicted RBP26.49■■□□□ 1.83
PNKP-220ENST00000627232 HELLSQ9NRZ9 838 aa26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms