RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GRPEL1Q9HAV7 217 aa12.77□□□□□ -0.36
CUX1-221ENST00000622516 PDRG1Q9NUG6 133 aa12.77□□□□□ -0.36
CUX1-221ENST00000622516 MAP4K1Q92918 833 aa12.77□□□□□ -0.37
CUX1-221ENST00000622516 LIMCH1Q9UPQ0 1083 aa12.77□□□□□ -0.37
CUX1-221ENST00000622516 GOLIM4O00461 696 aa12.76□□□□□ -0.37
CUX1-221ENST00000622516 BRD1O95696 1058 aa12.76□□□□□ -0.37
CUX1-221ENST00000622516 ZKSCAN1P17029 563 aaPredicted RBP12.76□□□□□ -0.37
CUX1-221ENST00000622516 ATP5JP18859 108 aa12.76□□□□□ -0.37
CUX1-221ENST00000622516 KLHL40Q2TBA0 621 aa12.76□□□□□ -0.37
CUX1-221ENST00000622516 CCDC191Q8NCU4 936 aa12.76□□□□□ -0.37
CUX1-221ENST00000622516 ERBB4Q15303 1308 aa12.76□□□□□ -0.37
CUX1-221ENST00000622516 SLC27A2O14975 620 aa12.76□□□□□ -0.37
CUX1-221ENST00000622516 IL17RAQ96F46 866 aa12.76□□□□□ -0.37
CUX1-221ENST00000622516 INTS4Q96HW7 963 aaKnown RBP12.76□□□□□ -0.37
CUX1-221ENST00000622516 TCIRG1Q13488 830 aa12.75□□□□□ -0.37
CUX1-221ENST00000622516 CYP46A1Q9Y6A2 500 aa12.75□□□□□ -0.37
CUX1-221ENST00000622516 COL15A1P39059 1388 aa12.75□□□□□ -0.37
CUX1-221ENST00000622516 GOLGB1Q14789 3259 aaKnown RBP12.75□□□□□ -0.37
CUX1-221ENST00000622516 EPB41L2O43491 1005 aaKnown RBP12.75□□□□□ -0.37
CUX1-221ENST00000622516 PRIM1P49642 420 aaKnown RBP12.75□□□□□ -0.37
CUX1-221ENST00000622516 ABCA3Q99758 1704 aa12.75□□□□□ -0.37
CUX1-221ENST00000622516 SNRKQ9NRH2 765 aa12.75□□□□□ -0.37
CUX1-221ENST00000622516 TBC1D2BQ9UPU7 963 aa12.75□□□□□ -0.37
CUX1-221ENST00000622516 SHANK3Q9BYB0 1731 aa12.75□□□□□ -0.37
CUX1-221ENST00000622516 NUTM2BA6NNL0 878 aaPredicted RBP12.75□□□□□ -0.37
CUX1-221ENST00000622516 NUTM2EB1AL46 878 aaPredicted RBP12.75□□□□□ -0.37
CUX1-221ENST00000622516 EXOC5O00471 708 aa12.75□□□□□ -0.37
CUX1-221ENST00000622516 NUTM2AQ8IVF1 878 aaPredicted RBP12.75□□□□□ -0.37
CUX1-221ENST00000622516 ACSBG1Q96GR2 724 aa12.75□□□□□ -0.37
CUX1-221ENST00000622516 ZSWIM6Q9HCJ5 1215 aa12.75□□□□□ -0.37
CUX1-221ENST00000622516 HIP1O00291 1037 aa12.74□□□□□ -0.37
CUX1-221ENST00000622516 MRE11P49959 708 aa12.74□□□□□ -0.37
CUX1-221ENST00000622516 ME3Q16798 604 aa12.74□□□□□ -0.37
CUX1-221ENST00000622516 ZBTB1Q9Y2K1 713 aa12.74□□□□□ -0.37
CUX1-221ENST00000622516 TOGARAM1Q9Y4F4 1720 aa12.74□□□□□ -0.37
CUX1-221ENST00000622516 FAM177BA6PVY3 158 aa12.74□□□□□ -0.37
CUX1-221ENST00000622516 EYA2O00167 538 aa12.74□□□□□ -0.37
CUX1-221ENST00000622516 TAF5LO75529 589 aa12.74□□□□□ -0.37
CUX1-221ENST00000622516 STARD3NLO95772 234 aa12.74□□□□□ -0.37
CUX1-221ENST00000622516 CCDC57Q2TAC2 916 aa12.74□□□□□ -0.37
CUX1-221ENST00000622516 KIF6Q6ZMV9 814 aa12.74□□□□□ -0.37
CUX1-221ENST00000622516 A0A1B0GUL7 405 aa12.73□□□□□ -0.37
CUX1-221ENST00000622516 STK3Q13188 491 aa12.73□□□□□ -0.37
CUX1-221ENST00000622516 ISCA1Q9BUE6 129 aa12.73□□□□□ -0.37
CUX1-221ENST00000622516 TPCN1Q9ULQ1 816 aa12.73□□□□□ -0.37
CUX1-221ENST00000622516 PLEKHG2Q9H7P9 1386 aa12.73□□□□□ -0.37
CUX1-221ENST00000622516 LAMB4A4D0S4 1761 aa12.73□□□□□ -0.37
CUX1-221ENST00000622516 ADORA1P30542 326 aa12.73□□□□□ -0.37
CUX1-221ENST00000622516 FKBP4Q02790 459 aaKnown RBP eCLIP12.73□□□□□ -0.37
CUX1-221ENST00000622516 VPS53Q5VIR6 699 aa12.73□□□□□ -0.37
CUX1-221ENST00000622516 HAUS7Q99871 368 aa12.73□□□□□ -0.37
CUX1-221ENST00000622516 SMC3Q9UQE7 1217 aa12.73□□□□□ -0.37
CUX1-221ENST00000622516 TNS2Q63HR2 1409 aa12.73□□□□□ -0.37
CUX1-221ENST00000622516 UBR2Q8IWV8 1755 aa12.73□□□□□ -0.37
CUX1-221ENST00000622516 TCHHQ07283 1943 aa12.73□□□□□ -0.37
CUX1-221ENST00000622516 GADD45BO75293 160 aaPredicted RBP12.72□□□□□ -0.37
CUX1-221ENST00000622516 PTMSP20962 102 aa12.72□□□□□ -0.37
CUX1-221ENST00000622516 SYT1P21579 422 aa12.72□□□□□ -0.37
CUX1-221ENST00000622516 ZSCAN23Q3MJ62 389 aa12.72□□□□□ -0.37
CUX1-221ENST00000622516 LRRC2Q9BYS8 371 aa12.72□□□□□ -0.37
CUX1-221ENST00000622516 RPAP1Q9BWH6 1393 aaPredicted RBP12.72□□□□□ -0.37
CUX1-221ENST00000622516 A0A0G2JLW4 131 aa12.72□□□□□ -0.37
CUX1-221ENST00000622516 IL15P40933 162 aaPredicted RBP12.72□□□□□ -0.37
CUX1-221ENST00000622516 ST3GAL1Q11201 340 aa12.72□□□□□ -0.37
CUX1-221ENST00000622516 TAF7LQ5H9L4 462 aa12.72□□□□□ -0.37
CUX1-221ENST00000622516 ZNF609O15014 1411 aa12.72□□□□□ -0.37
CUX1-221ENST00000622516 MED23Q9ULK4 1368 aa12.72□□□□□ -0.37
CUX1-221ENST00000622516 GJB2P29033 226 aa12.72□□□□□ -0.37
CUX1-221ENST00000622516 PAG1Q9NWQ8 432 aa12.72□□□□□ -0.37
CUX1-221ENST00000622516 TMEM63CQ9P1W3 806 aa12.72□□□□□ -0.37
CUX1-221ENST00000622516 PIP4K2BP78356 416 aa12.71□□□□□ -0.37
CUX1-221ENST00000622516 FGD1P98174 961 aa12.71□□□□□ -0.37
CUX1-221ENST00000622516 HSP90AB3PQ58FF7 597 aa12.71□□□□□ -0.37
CUX1-221ENST00000622516 BLOC1S2Q6QNY1 142 aa12.71□□□□□ -0.37
CUX1-221ENST00000622516 PI16Q6UXB8 463 aa12.71□□□□□ -0.37
CUX1-221ENST00000622516 CYP19A1P11511 503 aaPredicted RBP12.71□□□□□ -0.38
CUX1-221ENST00000622516 CEP126Q9P2H0 1117 aa12.71□□□□□ -0.38
CUX1-221ENST00000622516 STX6O43752 255 aa12.7□□□□□ -0.38
CUX1-221ENST00000622516 IFIT1P09914 478 aaKnown RBP12.7□□□□□ -0.38
CUX1-221ENST00000622516 GORABQ5T7V8 394 aa12.7□□□□□ -0.38
CUX1-221ENST00000622516 KBTBD3Q8NAB2 608 aa12.7□□□□□ -0.38
CUX1-221ENST00000622516 KCNB2Q92953 911 aa12.7□□□□□ -0.38
CUX1-221ENST00000622516 CNPY2Q9Y2B0 182 aa12.7□□□□□ -0.38
CUX1-221ENST00000622516 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.7□□□□□ -0.38
CUX1-221ENST00000622516 SYCE3A1L190 88 aa12.7□□□□□ -0.38
CUX1-221ENST00000622516 MCMDC2Q4G0Z9 681 aa12.7□□□□□ -0.38
CUX1-221ENST00000622516 RNF20Q5VTR2 975 aa12.7□□□□□ -0.38
CUX1-221ENST00000622516 USP48Q86UV5 1035 aa12.7□□□□□ -0.38
CUX1-221ENST00000622516 GREM2Q9H772 168 aa12.7□□□□□ -0.38
CUX1-221ENST00000622516 MAP3K15Q6ZN16 1313 aa12.7□□□□□ -0.38
CUX1-221ENST00000622516 WDR33Q9C0J8 1336 aaKnown RBP12.7□□□□□ -0.38
CUX1-221ENST00000622516 NHSL1Q5SYE7 1610 aa12.7□□□□□ -0.38
CUX1-221ENST00000622516 VPS37CA5D8V6 355 aaPredicted RBP12.69□□□□□ -0.38
CUX1-221ENST00000622516 PPFIA3O75145 1194 aa12.69□□□□□ -0.38
CUX1-221ENST00000622516 CYP21A2P08686 494 aa12.69□□□□□ -0.38
CUX1-221ENST00000622516 IFIT5Q13325 482 aaKnown RBP12.69□□□□□ -0.38
CUX1-221ENST00000622516 SCARF1Q14162 830 aa12.69□□□□□ -0.38
CUX1-221ENST00000622516 GIGYF2Q6Y7W6 1299 aaKnown RBP12.69□□□□□ -0.38
CUX1-221ENST00000622516 TM6SF1Q9BZW5 370 aa12.69□□□□□ -0.38
CUX1-221ENST00000622516 NUP188Q5SRE5 1749 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms