RNA–Protein interactions for RNA: ENST00000617246.4

LPP-220, Transcript of LIM domain containing preferred translocation partner in lipoma, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LPP, Length 18,220 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPP-220ENST00000617246 DPF3Q92784 378 aa3.95□□□□□ -1.78
LPP-220ENST00000617246 CCDC102AQ96A19 550 aa3.95□□□□□ -1.78
LPP-220ENST00000617246 USP54Q70EL1 1684 aa3.95□□□□□ -1.78
LPP-220ENST00000617246 CEBPAP49715 358 aaPredicted RBP3.95□□□□□ -1.78
LPP-220ENST00000617246 NUP133Q8WUM0 1156 aa3.95□□□□□ -1.78
LPP-220ENST00000617246 SLAIN2Q9P270 581 aa3.95□□□□□ -1.78
LPP-220ENST00000617246 DISP1Q96F81 1524 aa3.95□□□□□ -1.78
LPP-220ENST00000617246 H3BQV1 296 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 IFFO2Q5TF58 517 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 NKX2-3Q8TAU0 364 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 LRP2BPQ9P2M1 347 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 TNRC6CQ9HCJ0 1690 aaKnown RBP3.94□□□□□ -1.78
LPP-220ENST00000617246 PLEKHG1Q9ULL1 1385 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 NUCB2P80303 420 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 TMEM94Q12767 1356 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 CACNA1FO60840 1977 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 TRIM5Q9C035 493 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 PIP4K2AP48426 406 aaPredicted RBP3.94□□□□□ -1.78
LPP-220ENST00000617246 UNC5CLQ8IV45 518 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 ITPRIPQ8IWB1 547 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 SOCS7O14512 581 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 KRT23Q9C075 422 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 MYH4Q9Y623 1939 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 TXLNBQ8N3L3 684 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 DOT1LQ8TEK3 1739 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 GNAT3A8MTJ3 354 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 CDAN1Q8IWY9 1227 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 RTKN2Q8IZC4 609 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 ZNF444Q8N0Y2 327 aaPredicted RBP3.94□□□□□ -1.78
LPP-220ENST00000617246 E9PCH4 1651 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 NFKBIAP25963 317 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 TRIM6Q9C030 488 aaPredicted RBP3.94□□□□□ -1.78
LPP-220ENST00000617246 CCDC69A6NI79 296 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 DDX42Q86XP3 938 aaKnown RBP eCLIP3.94□□□□□ -1.78
LPP-220ENST00000617246 MYL6BP14649 208 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 XPCQ01831 940 aaPredicted RBP3.94□□□□□ -1.78
LPP-220ENST00000617246 SYAP1Q96A49 352 aaPredicted RBP3.94□□□□□ -1.78
LPP-220ENST00000617246 TTF1Q15361 905 aaPredicted RBP3.94□□□□□ -1.78
LPP-220ENST00000617246 NBPF10Q6P3W6 841 aaKnown RBP3.94□□□□□ -1.78
LPP-220ENST00000617246 GPATCH8Q9UKJ3 1502 aaKnown RBP3.94□□□□□ -1.78
LPP-220ENST00000617246 RAI14Q9P0K7 980 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 SEC24BO95487 1268 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 FILIP1Q7Z7B0 1213 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 ANKRD24Q8TF21 1146 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 HACL1Q9UJ83 578 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 CEP131Q9UPN4 1083 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 TTLL7Q6ZT98 887 aa3.94□□□□□ -1.78
LPP-220ENST00000617246 RRP7AQ9Y3A4 280 aaKnown RBP3.94□□□□□ -1.78
LPP-220ENST00000617246 PES1O00541 588 aaKnown RBP3.94□□□□□ -1.78
LPP-220ENST00000617246 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.94□□□□□ -1.78
LPP-220ENST00000617246 CARNS1A5YM72 827 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 API5Q9BZZ5 524 aaKnown RBP3.93□□□□□ -1.78
LPP-220ENST00000617246 FLT4P35916 1363 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 CA12O43570 354 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 SUPT20HL1Q3ZLR7 823 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 TAOK3Q9H2K8 898 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 SPEF2Q9C093 1822 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 ZBBXA8MT70 800 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 PDE4BQ07343 736 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 TMEM266Q2M3C6 531 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 YAF2Q8IY57 180 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 NOS1P29475 1434 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 XRN1Q8IZH2 1706 aaKnown RBP3.93□□□□□ -1.78
LPP-220ENST00000617246 HMGB1P1B2RPK0 211 aaPredicted RBP3.93□□□□□ -1.78
LPP-220ENST00000617246 TDO2P48775 406 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 RAB11FIP4Q86YS3 637 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 NUDT16Q96DE0 195 aaKnown RBP3.93□□□□□ -1.78
LPP-220ENST00000617246 CCDC96Q2M329 555 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 NBPF1Q3BBV0 1214 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 RBM26Q5T8P6 1007 aaKnown RBP3.93□□□□□ -1.78
LPP-220ENST00000617246 RETREG2Q8NC44 543 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 PRPF31Q8WWY3 499 aaKnown RBP3.93□□□□□ -1.78
LPP-220ENST00000617246 NOL7Q9UMY1 257 aaKnown RBP3.93□□□□□ -1.78
LPP-220ENST00000617246 SLC8A2Q9UPR5 921 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 PDE4CQ08493 712 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 GADL1Q6ZQY3 521 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 TRMT112Q9UI30 125 aaKnown RBP3.93□□□□□ -1.78
LPP-220ENST00000617246 SAMM50Q9Y512 469 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 KIF20AO95235 890 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 EIF5P55010 431 aaKnown RBP3.93□□□□□ -1.78
LPP-220ENST00000617246 NBPF9Q3BBW0 867 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 KCNG4Q8TDN1 519 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 DPP7Q9UHL4 492 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 PARP10Q53GL7 1025 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 HDGFL1Q5TGJ6 251 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 RTL1A6NKG5 1358 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 NOP56O00567 594 aaKnown RBP3.93□□□□□ -1.78
LPP-220ENST00000617246 C9orf131Q5VYM1 1079 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 WASF1Q92558 559 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 BAG4O95429 457 aaKnown RBP3.93□□□□□ -1.78
LPP-220ENST00000617246 UBTFL1P0CB47 393 aaPredicted RBP3.93□□□□□ -1.78
LPP-220ENST00000617246 AAK1Q2M2I8 961 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 ERFEQ4G0M1 354 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 METTL24Q5JXM2 366 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 FBXO3Q9UK99 471 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 GNAI3P08754 354 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 CCDC61Q9Y6R9 512 aa3.93□□□□□ -1.78
LPP-220ENST00000617246 MYOM1P52179 1685 aa3.92□□□□□ -1.78
LPP-220ENST00000617246 HSCBQ8IWL3 235 aa3.92□□□□□ -1.78
LPP-220ENST00000617246 RNF34Q969K3 372 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms