RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 IL6STP40189 918 aaPredicted RBP9.5□□□□□ -0.89
NEK3-207ENST00000617054 EIF5P55010 431 aaKnown RBP9.5□□□□□ -0.89
NEK3-207ENST00000617054 SLFNL1Q499Z3 407 aa9.5□□□□□ -0.89
NEK3-207ENST00000617054 AMIGO3Q86WK7 504 aa9.5□□□□□ -0.89
NEK3-207ENST00000617054 PALD1Q9ULE6 856 aa9.5□□□□□ -0.89
NEK3-207ENST00000617054 WNK3Q9BYP7 1800 aa9.5□□□□□ -0.89
NEK3-207ENST00000617054 SPATA31A6Q5VVP1 1343 aa9.5□□□□□ -0.89
NEK3-207ENST00000617054 TNNI3KQ59H18 835 aa9.5□□□□□ -0.89
NEK3-207ENST00000617054 CCDC24Q8N4L8 307 aa9.5□□□□□ -0.89
NEK3-207ENST00000617054 ZBTB38Q8NAP3 1195 aaPredicted RBP9.5□□□□□ -0.89
NEK3-207ENST00000617054 GREM2Q9H772 168 aa9.5□□□□□ -0.89
NEK3-207ENST00000617054 QTRT2Q9H974 415 aaKnown RBP9.5□□□□□ -0.89
NEK3-207ENST00000617054 FPGT-TNNI3KV9GXZ4 949 aa9.5□□□□□ -0.89
NEK3-207ENST00000617054 MYH14Q7Z406 1995 aaKnown RBP9.5□□□□□ -0.89
NEK3-207ENST00000617054 NUP188Q5SRE5 1749 aa9.5□□□□□ -0.89
NEK3-207ENST00000617054 CCDC57Q2TAC2 916 aa9.5□□□□□ -0.89
NEK3-207ENST00000617054 SUSD4Q5VX71 490 aa9.5□□□□□ -0.89
NEK3-207ENST00000617054 SEPT12Q8IYM1 358 aa9.5□□□□□ -0.89
NEK3-207ENST00000617054 DNAJC2Q99543 621 aaKnown RBP9.5□□□□□ -0.89
NEK3-207ENST00000617054 IRS4O14654 1257 aaPredicted RBP9.49□□□□□ -0.89
NEK3-207ENST00000617054 GLRX3O76003 335 aaKnown RBP9.49□□□□□ -0.89
NEK3-207ENST00000617054 NOL8Q76FK4 1167 aaKnown RBP9.49□□□□□ -0.89
NEK3-207ENST00000617054 CNTROBQ8N137 903 aa9.49□□□□□ -0.89
NEK3-207ENST00000617054 SNAP23O00161 211 aa9.49□□□□□ -0.89
NEK3-207ENST00000617054 FAM227BQ96M60 508 aa9.49□□□□□ -0.89
NEK3-207ENST00000617054 NWD2Q9ULI1 1742 aa9.48□□□□□ -0.89
NEK3-207ENST00000617054 PCCAP05165 728 aaPredicted RBP9.48□□□□□ -0.89
NEK3-207ENST00000617054 TAF7LQ5H9L4 462 aa9.48□□□□□ -0.89
NEK3-207ENST00000617054 SRCAPQ6ZRS2 3230 aa9.48□□□□□ -0.89
NEK3-207ENST00000617054 REC8O95072 547 aa9.48□□□□□ -0.89
NEK3-207ENST00000617054 ITGA6P23229 1130 aa9.48□□□□□ -0.89
NEK3-207ENST00000617054 HSCBQ8IWL3 235 aa9.48□□□□□ -0.89
NEK3-207ENST00000617054 HELBQ8NG08 1087 aaPredicted RBP9.48□□□□□ -0.89
NEK3-207ENST00000617054 TTLL11Q8NHH1 800 aa9.48□□□□□ -0.89
NEK3-207ENST00000617054 NIP7Q9Y221 180 aaKnown RBP eCLIP9.48□□□□□ -0.89
NEK3-207ENST00000617054 TTC41PQ6P2S7 1318 aa9.48□□□□□ -0.89
NEK3-207ENST00000617054 PHF14O94880 888 aa9.48□□□□□ -0.89
NEK3-207ENST00000617054 CAMTA2O94983 1202 aa9.48□□□□□ -0.89
NEK3-207ENST00000617054 SLC24A3Q9HC58 644 aa9.48□□□□□ -0.89
NEK3-207ENST00000617054 SRP68Q9UHB9 627 aaKnown RBP9.48□□□□□ -0.89
NEK3-207ENST00000617054 TJP1Q07157 1748 aa9.47□□□□□ -0.89
NEK3-207ENST00000617054 EYA2O00167 538 aa9.47□□□□□ -0.89
NEK3-207ENST00000617054 TRIM28Q13263 835 aaKnown RBP9.47□□□□□ -0.89
NEK3-207ENST00000617054 IFIT5Q13325 482 aaKnown RBP9.47□□□□□ -0.89
NEK3-207ENST00000617054 DDX46Q7L014 1031 aaKnown RBP9.47□□□□□ -0.89
NEK3-207ENST00000617054 GPATCH3Q96I76 525 aa9.47□□□□□ -0.89
NEK3-207ENST00000617054 LARP6Q9BRS8 491 aaKnown RBP9.47□□□□□ -0.89
NEK3-207ENST00000617054 DTNBO60941 627 aa9.47□□□□□ -0.89
NEK3-207ENST00000617054 ADORA1P30542 326 aa9.47□□□□□ -0.89
NEK3-207ENST00000617054 ZNF34Q8IZ26 560 aa9.47□□□□□ -0.89
NEK3-207ENST00000617054 UPF3BQ9BZI7 483 aaKnown RBP9.47□□□□□ -0.89
NEK3-207ENST00000617054 SEC31BQ9NQW1 1179 aa9.47□□□□□ -0.89
NEK3-207ENST00000617054 SNRKQ9NRH2 765 aa9.47□□□□□ -0.89
NEK3-207ENST00000617054 DIAPH3Q9NSV4 1193 aa9.47□□□□□ -0.89
NEK3-207ENST00000617054 FRAT2O75474 233 aaPredicted RBP9.46□□□□□ -0.89
NEK3-207ENST00000617054 PTH1RQ03431 593 aa9.46□□□□□ -0.89
NEK3-207ENST00000617054 LDHAL6AQ6ZMR3 332 aa9.46□□□□□ -0.89
NEK3-207ENST00000617054 FSD1Q9BTV5 496 aa9.46□□□□□ -0.89
NEK3-207ENST00000617054 AOX1Q06278 1338 aa9.46□□□□□ -0.89
NEK3-207ENST00000617054 A0A1B0GUL7 405 aa9.46□□□□□ -0.89
NEK3-207ENST00000617054 GNPATO15228 680 aa9.46□□□□□ -0.89
NEK3-207ENST00000617054 GTPBP6O43824 516 aaPredicted RBP9.46□□□□□ -0.89
NEK3-207ENST00000617054 PLCD3Q8N3E9 789 aa9.46□□□□□ -0.89
NEK3-207ENST00000617054 SMARCC1Q92922 1105 aaPredicted RBP9.46□□□□□ -0.89
NEK3-207ENST00000617054 SEC62Q99442 399 aaKnown RBP9.46□□□□□ -0.89
NEK3-207ENST00000617054 GPBP1L1Q9HC44 474 aaPredicted RBP9.46□□□□□ -0.89
NEK3-207ENST00000617054 CCNL1Q9UK58 526 aaPredicted RBP9.46□□□□□ -0.89
NEK3-207ENST00000617054 USP42Q9H9J4 1324 aaKnown RBP9.46□□□□□ -0.9
NEK3-207ENST00000617054 NUP98P52948 1817 aa9.46□□□□□ -0.9
NEK3-207ENST00000617054 SGSM2O43147 1006 aa9.46□□□□□ -0.9
NEK3-207ENST00000617054 CTSWP56202 376 aa9.46□□□□□ -0.9
NEK3-207ENST00000617054 NFKBIBQ15653 356 aa9.46□□□□□ -0.9
NEK3-207ENST00000617054 PI16Q6UXB8 463 aa9.46□□□□□ -0.9
NEK3-207ENST00000617054 KCNV2Q8TDN2 545 aa9.46□□□□□ -0.9
NEK3-207ENST00000617054 TUBGCP6Q96RT7 1819 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 A0A0D9SFI3 127 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 ERVV-1B6SEH8 477 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 CSF1RP07333 972 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 HSP90AA1P07900 732 aaKnown RBP9.45□□□□□ -0.9
NEK3-207ENST00000617054 CPA1P15085 419 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 NEK4P51957 841 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 NMIQ13287 307 aaPredicted RBP9.45□□□□□ -0.9
NEK3-207ENST00000617054 HSP90AB3PQ58FF7 597 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 USPL1Q5W0Q7 1092 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 ANTXR1Q9H6X2 564 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 TRPC5Q9UL62 973 aaPredicted RBP9.45□□□□□ -0.9
NEK3-207ENST00000617054 WTIPA6NIX2 430 aaPredicted RBP9.45□□□□□ -0.9
NEK3-207ENST00000617054 GOLIM4O00461 696 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 TAF5LO75529 589 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 IL15P40933 162 aaPredicted RBP9.45□□□□□ -0.9
NEK3-207ENST00000617054 COL9A3Q14050 684 aaPredicted RBP9.45□□□□□ -0.9
NEK3-207ENST00000617054 RASEFQ8IZ41 740 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 EVI5LQ96CN4 794 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 CNNM1Q9NRU3 951 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 CEP126Q9P2H0 1117 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 COL15A1P39059 1388 aa9.45□□□□□ -0.9
NEK3-207ENST00000617054 TRIM37O94972 964 aa9.44□□□□□ -0.9
NEK3-207ENST00000617054 FKBP4Q02790 459 aaKnown RBP eCLIP9.44□□□□□ -0.9
NEK3-207ENST00000617054 CCDC129Q6ZRS4 1044 aa9.44□□□□□ -0.9
NEK3-207ENST00000617054 C3orf67Q6ZVT6 689 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms