RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 GCKRQ14397 625 aa7.3□□□□□ -1.24
CPNE3-208ENST00000614678 DLK2Q6UY11 383 aa7.3□□□□□ -1.24
CPNE3-208ENST00000614678 GPBP1L1Q9HC44 474 aaPredicted RBP7.3□□□□□ -1.24
CPNE3-208ENST00000614678 CWC25Q9NXE8 425 aaPredicted RBP7.3□□□□□ -1.24
CPNE3-208ENST00000614678 DUOX1Q9NRD9 1551 aa7.29□□□□□ -1.24
CPNE3-208ENST00000614678 E9PSI1 815 aa7.29□□□□□ -1.24
CPNE3-208ENST00000614678 HOXA10P31260 410 aaPredicted RBP7.29□□□□□ -1.24
CPNE3-208ENST00000614678 FMR1Q06787 632 aaKnown RBP eCLIP7.29□□□□□ -1.24
CPNE3-208ENST00000614678 FAM161AQ3B820 660 aa7.29□□□□□ -1.24
CPNE3-208ENST00000614678 CNKSR1Q969H4 720 aa7.29□□□□□ -1.24
CPNE3-208ENST00000614678 CLUAP1Q96AJ1 413 aa7.29□□□□□ -1.24
CPNE3-208ENST00000614678 TAOK3Q9H2K8 898 aa7.29□□□□□ -1.24
CPNE3-208ENST00000614678 TIAM2Q8IVF5 1701 aa7.29□□□□□ -1.24
CPNE3-208ENST00000614678 NOB1Q9ULX3 412 aaKnown RBP7.29□□□□□ -1.24
CPNE3-208ENST00000614678 RIMBP2O15034 1052 aa7.29□□□□□ -1.24
CPNE3-208ENST00000614678 HELBQ8NG08 1087 aaPredicted RBP7.29□□□□□ -1.24
CPNE3-208ENST00000614678 TTLL11Q8NHH1 800 aa7.29□□□□□ -1.24
CPNE3-208ENST00000614678 POLLQ9UGP5 575 aa7.29□□□□□ -1.24
CPNE3-208ENST00000614678 LMNB1P20700 586 aa7.28□□□□□ -1.24
CPNE3-208ENST00000614678 GPSM2P81274 684 aa7.28□□□□□ -1.24
CPNE3-208ENST00000614678 TXNRD3Q86VQ6 643 aa7.28□□□□□ -1.24
CPNE3-208ENST00000614678 CCDC191Q8NCU4 936 aa7.28□□□□□ -1.24
CPNE3-208ENST00000614678 SMC4Q9NTJ3 1288 aa7.28□□□□□ -1.24
CPNE3-208ENST00000614678 SCAF8Q9UPN6 1271 aaKnown RBP7.28□□□□□ -1.24
CPNE3-208ENST00000614678 H7C1W4 665 aa7.28□□□□□ -1.24
CPNE3-208ENST00000614678 TRIM28Q13263 835 aaKnown RBP7.28□□□□□ -1.24
CPNE3-208ENST00000614678 HSP90AB3PQ58FF7 597 aa7.28□□□□□ -1.24
CPNE3-208ENST00000614678 NSFL1CQ9UNZ2 370 aaKnown RBP7.28□□□□□ -1.24
CPNE3-208ENST00000614678 RNF123Q5XPI4 1314 aa7.28□□□□□ -1.24
CPNE3-208ENST00000614678 PCCAP05165 728 aaPredicted RBP7.28□□□□□ -1.24
CPNE3-208ENST00000614678 RARSP54136 660 aaKnown RBP7.28□□□□□ -1.24
CPNE3-208ENST00000614678 FOXO4P98177 505 aa7.28□□□□□ -1.24
CPNE3-208ENST00000614678 DOK7Q18PE1 504 aa7.28□□□□□ -1.24
CPNE3-208ENST00000614678 SUCLG2Q96I99 432 aa7.28□□□□□ -1.24
CPNE3-208ENST00000614678 DBNDD1Q9H9R9 158 aa7.28□□□□□ -1.24
CPNE3-208ENST00000614678 YDJCA8MPS7 323 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 GRAPQ13588 217 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 CCDC93Q567U6 631 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 GRAPLQ8TC17 118 aaPredicted RBP7.27□□□□□ -1.25
CPNE3-208ENST00000614678 FRAT1Q92837 279 aaPredicted RBP7.27□□□□□ -1.25
CPNE3-208ENST00000614678 RBM17Q96I25 401 aaKnown RBP7.27□□□□□ -1.25
CPNE3-208ENST00000614678 MXD3Q9BW11 206 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 SCN9AQ15858 1988 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 PLIN1O60240 522 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 TAF5LO75529 589 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 DDX46Q7L014 1031 aaKnown RBP7.27□□□□□ -1.25
CPNE3-208ENST00000614678 PUS3Q9BZE2 481 aaKnown RBP7.27□□□□□ -1.25
CPNE3-208ENST00000614678 ZBTB12Q9Y330 459 aaPredicted RBP7.27□□□□□ -1.25
CPNE3-208ENST00000614678 ATP6V0A2Q9Y487 856 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 RIC1Q4ADV7 1423 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 LTBP1Q14766 1721 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 DDX58O95786 925 aaKnown RBP7.27□□□□□ -1.25
CPNE3-208ENST00000614678 EGFRP00533 1210 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 ALDH1B1P30837 517 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 CTSWP56202 376 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 FKBP4Q02790 459 aaKnown RBP eCLIP7.27□□□□□ -1.25
CPNE3-208ENST00000614678 SF3B3Q15393 1217 aaKnown RBP7.27□□□□□ -1.25
CPNE3-208ENST00000614678 NCBP3Q53F19 620 aaKnown RBP7.27□□□□□ -1.25
CPNE3-208ENST00000614678 CRAMP1Q96RY5 1269 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 CHMP3Q9Y3E7 222 aa7.27□□□□□ -1.25
CPNE3-208ENST00000614678 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.27□□□□□ -1.25
CPNE3-208ENST00000614678 RAD17O75943 681 aa7.26□□□□□ -1.25
CPNE3-208ENST00000614678 RLBP1P12271 317 aa7.26□□□□□ -1.25
CPNE3-208ENST00000614678 JAG2Q9Y219 1238 aa7.26□□□□□ -1.25
CPNE3-208ENST00000614678 IBTKQ9P2D0 1353 aaPredicted RBP7.26□□□□□ -1.25
CPNE3-208ENST00000614678 DICER1Q9UPY3 1922 aaKnown RBP7.26□□□□□ -1.25
CPNE3-208ENST00000614678 IARSP41252 1262 aaKnown RBP7.26□□□□□ -1.25
CPNE3-208ENST00000614678 LMBR1LQ6UX01 489 aa7.26□□□□□ -1.25
CPNE3-208ENST00000614678 LINS1Q8NG48 757 aa7.26□□□□□ -1.25
CPNE3-208ENST00000614678 USP44Q9H0E7 712 aa7.26□□□□□ -1.25
CPNE3-208ENST00000614678 GJA3Q9Y6H8 435 aa7.26□□□□□ -1.25
CPNE3-208ENST00000614678 RGL2O15211 777 aa7.26□□□□□ -1.25
CPNE3-208ENST00000614678 PDE8AO60658 829 aa7.26□□□□□ -1.25
CPNE3-208ENST00000614678 ITGA6P23229 1130 aa7.26□□□□□ -1.25
CPNE3-208ENST00000614678 RPS8P62241 208 aaKnown RBP7.26□□□□□ -1.25
CPNE3-208ENST00000614678 MYH3P11055 1940 aa7.26□□□□□ -1.25
CPNE3-208ENST00000614678 C1QTNF8P60827 252 aa7.25□□□□□ -1.25
CPNE3-208ENST00000614678 NEXNQ0ZGT2 675 aa7.25□□□□□ -1.25
CPNE3-208ENST00000614678 CACNA1FO60840 1977 aa7.25□□□□□ -1.25
CPNE3-208ENST00000614678 GLTPD2A6NH11 291 aa7.25□□□□□ -1.25
CPNE3-208ENST00000614678 PPIP5K2O43314 1243 aa7.25□□□□□ -1.25
CPNE3-208ENST00000614678 DPP8Q6V1X1 898 aaPredicted RBP7.25□□□□□ -1.25
CPNE3-208ENST00000614678 LARGE2Q8N3Y3 721 aa7.25□□□□□ -1.25
CPNE3-208ENST00000614678 BICC1Q9H694 974 aaKnown RBP7.25□□□□□ -1.25
CPNE3-208ENST00000614678 EPS15P42566 896 aa7.25□□□□□ -1.25
CPNE3-208ENST00000614678 MPNDQ8N594 471 aa7.25□□□□□ -1.25
CPNE3-208ENST00000614678 MEIS3Q99687 375 aa7.25□□□□□ -1.25
CPNE3-208ENST00000614678 C6orf229H3BNL8 230 aa7.25□□□□□ -1.25
CPNE3-208ENST00000614678 GRM8O00222 908 aa7.25□□□□□ -1.25
CPNE3-208ENST00000614678 TRIM27P14373 513 aa7.25□□□□□ -1.25
CPNE3-208ENST00000614678 C1orf115Q9H7X2 142 aa7.25□□□□□ -1.25
CPNE3-208ENST00000614678 SP8Q8IXZ3 490 aa7.24□□□□□ -1.25
CPNE3-208ENST00000614678 ANKRD44Q8N8A2 993 aa7.24□□□□□ -1.25
CPNE3-208ENST00000614678 TBC1D16Q8TBP0 767 aa7.24□□□□□ -1.25
CPNE3-208ENST00000614678 SRCIN1Q9C0H9 1055 aa7.24□□□□□ -1.25
CPNE3-208ENST00000614678 MINPP1Q9UNW1 487 aa7.24□□□□□ -1.25
CPNE3-208ENST00000614678 LRRC24Q50LG9 513 aa7.24□□□□□ -1.25
CPNE3-208ENST00000614678 C9orf78Q9NZ63 289 aaPredicted RBP7.24□□□□□ -1.25
CPNE3-208ENST00000614678 ASTN2O75129 1339 aaPredicted RBP7.24□□□□□ -1.25
CPNE3-208ENST00000614678 LRRC37AA6NMS7 1700 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms