RNA–Protein interactions for RNA: ENST00000610733.1

TPM1-233, Transcript of tropomyosin 1, human

TSL 2 BASIC

Gene TPM1, Length 3,957 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-233	ENST00000610733	UNC13B	O14795	1591 aa		11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	PTPDC1	A2A3K4	754 aa		11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	UVSSA	Q2YD98	709 aa		11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	VPS53	Q5VIR6	699 aa		11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	KSR2	Q6VAB6	950 aa		11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	SYT10	Q6XYQ8	523 aa		11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	GPHN	Q9NQX3	736 aa	Predicted RBP	11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	CEP126	Q9P2H0	1117 aa		11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	ORC3	Q9UBD5	711 aa	Predicted RBP	11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	DNAI1	Q9UI46	699 aa		11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	TULP4	Q9NRJ4	1543 aa		11.19	□□□□□ -0.62
TPM1-233	ENST00000610733	TPM3	P06753	285 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	ANKRD13D	Q6ZTN6	518 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	GPIHBP1	Q8IV16	184 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	HELB	Q8NG08	1087 aa	Predicted RBP	11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	SSH3	Q8TE77	659 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	ORAI2	Q96SN7	254 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	DDX19A	Q9NUU7	478 aa	Known RBP	11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	TAT	P17735	454 aa	Predicted RBP	11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	CCDC57	Q2TAC2	916 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	IFNK	Q9P0W0	207 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	KLF18	A0A0U1RQI7	1052 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	CUL4A	Q13619	759 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	ELF2	Q15723	593 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	ATP2B3	Q16720	1220 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	KIF18A	Q8NI77	898 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	MYL10	Q9BUA6	226 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	IQSEC2	Q5JU85	1478 aa		11.18	□□□□□ -0.62
TPM1-233	ENST00000610733	MAP3K5	Q99683	1374 aa		11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	MYOM2	P54296	1465 aa		11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	AKAP17A	Q02040	695 aa	Known RBP	11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	OLFM4	Q6UX06	510 aa		11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	PI4K2B	Q8TCG2	481 aa		11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	UBXN4	Q92575	508 aa		11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	SLC3A2	P08195	630 aa	Known RBP	11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	EIF4A1	P60842	406 aa	Known RBP	11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	TOM1L2	Q6ZVM7	507 aa		11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	NPHP3	Q7Z494	1330 aa		11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	PTCH1	Q13635	1447 aa		11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	RAD21	O60216	631 aa		11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	PPARD	Q03181	441 aa		11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	SNW1	Q13573	536 aa	Known RBP	11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	SMAP1	Q8IYB5	467 aa	Predicted RBP	11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	PDLIM2	Q96JY6	352 aa		11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	ANO10	Q9NW15	660 aa		11.17	□□□□□ -0.62
TPM1-233	ENST00000610733	VGLL3	A8MV65	326 aa		11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	CCDC158	Q5M9N0	1113 aa		11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	KIF1B	O60333	1816 aa		11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	SPHKAP	Q2M3C7	1700 aa		11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	RPS6KB1	P23443	525 aa		11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	BEND3	Q5T5X7	828 aa		11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	CACTIN	Q8WUQ7	758 aa	Known RBP	11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	CCDC34	Q96HJ3	373 aa		11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	ZMYM3	Q14202	1370 aa		11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	KRT32	Q14532	448 aa		11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	ZKSCAN3	Q9BRR0	538 aa		11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	ABCF2	Q9UG63	623 aa		11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	MRVI1	Q9Y6F6	885 aa		11.16	□□□□□ -0.62
TPM1-233	ENST00000610733	ZNF75D	P51815	510 aa		11.15	□□□□□ -0.62
TPM1-233	ENST00000610733	STX1A	Q16623	288 aa		11.15	□□□□□ -0.62
TPM1-233	ENST00000610733	USP28	Q96RU2	1077 aa		11.15	□□□□□ -0.62
TPM1-233	ENST00000610733	ZNF215	Q9UL58	517 aa	Predicted RBP	11.15	□□□□□ -0.62
TPM1-233	ENST00000610733	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.15	□□□□□ -0.62
TPM1-233	ENST00000610733	ROBO2	Q9HCK4	1378 aa		11.15	□□□□□ -0.62
TPM1-233	ENST00000610733	MINDY4B	A8MYZ0	360 aa		11.15	□□□□□ -0.62
TPM1-233	ENST00000610733	FAM193A	P78312	1265 aa		11.15	□□□□□ -0.62
TPM1-233	ENST00000610733	ZSCAN25	Q6NSZ9	544 aa		11.15	□□□□□ -0.62
TPM1-233	ENST00000610733	C11orf57	Q6ZUT1	292 aa	Predicted RBP	11.15	□□□□□ -0.62
TPM1-233	ENST00000610733	LINS1	Q8NG48	757 aa		11.15	□□□□□ -0.62
TPM1-233	ENST00000610733	CLASP1	Q7Z460	1538 aa		11.15	□□□□□ -0.62
TPM1-233	ENST00000610733	KARS	Q15046	597 aa	Known RBP	11.15	□□□□□ -0.63
TPM1-233	ENST00000610733	PLCD3	Q8N3E9	789 aa		11.15	□□□□□ -0.63
TPM1-233	ENST00000610733	OSBPL3	Q9H4L5	887 aa		11.15	□□□□□ -0.63
TPM1-233	ENST00000610733		U3KPZ7	1027 aa	Predicted RBP	11.15	□□□□□ -0.63
TPM1-233	ENST00000610733	STX17	P56962	302 aa		11.14	□□□□□ -0.63
TPM1-233	ENST00000610733	METTL24	Q5JXM2	366 aa		11.14	□□□□□ -0.63
TPM1-233	ENST00000610733	CMTR1	Q8N1G2	835 aa	Known RBP	11.14	□□□□□ -0.63
TPM1-233	ENST00000610733	hCG_1642624	A0A1W2PR95	340 aa		11.14	□□□□□ -0.63
TPM1-233	ENST00000610733	AP5Z1	O43299	807 aa		11.14	□□□□□ -0.63
TPM1-233	ENST00000610733	DNAJC5	Q9H3Z4	198 aa		11.14	□□□□□ -0.63
TPM1-233	ENST00000610733	RGS12	O14924	1447 aa		11.14	□□□□□ -0.63
TPM1-233	ENST00000610733	UHRF1BP1L	A0JNW5	1464 aa		11.14	□□□□□ -0.63
TPM1-233	ENST00000610733	MCMDC2	Q4G0Z9	681 aa		11.14	□□□□□ -0.63
TPM1-233	ENST00000610733	PHKB	Q93100	1093 aa		11.14	□□□□□ -0.63
TPM1-233	ENST00000610733	ZNF496	Q96IT1	587 aa	Predicted RBP	11.14	□□□□□ -0.63
TPM1-233	ENST00000610733	QRICH2	Q9H0J4	1663 aa		11.13	□□□□□ -0.63
TPM1-233	ENST00000610733	COBL	O75128	1261 aa		11.13	□□□□□ -0.63
TPM1-233	ENST00000610733	GC	P02774	474 aa		11.13	□□□□□ -0.63
TPM1-233	ENST00000610733	DHX8	Q14562	1220 aa	Known RBP	11.13	□□□□□ -0.63
TPM1-233	ENST00000610733	SAFB	Q15424	915 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
TPM1-233	ENST00000610733	IMMT	Q16891	758 aa	Known RBP	11.13	□□□□□ -0.63
TPM1-233	ENST00000610733	TEX2	Q8IWB9	1127 aa		11.13	□□□□□ -0.63
TPM1-233	ENST00000610733	USP27X	A6NNY8	438 aa		11.13	□□□□□ -0.63
TPM1-233	ENST00000610733	PHACTR2	O75167	634 aa		11.13	□□□□□ -0.63
TPM1-233	ENST00000610733	DNA2	P51530	1060 aa		11.13	□□□□□ -0.63
TPM1-233	ENST00000610733	GNG11	P61952	73 aa		11.13	□□□□□ -0.63
TPM1-233	ENST00000610733	PI16	Q6UXB8	463 aa		11.13	□□□□□ -0.63
TPM1-233	ENST00000610733	KIAA1524	Q8TCG1	905 aa		11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 36 ms