RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 MLLT1Q03111 559 aaPredicted RBP8.25□□□□□ -1.09
CUX1-220ENST00000607092 KIAA2012Q0VF49 1180 aa8.25□□□□□ -1.09
CUX1-220ENST00000607092 NOGQ13253 232 aa8.25□□□□□ -1.09
CUX1-220ENST00000607092 SUSD4Q5VX71 490 aa8.25□□□□□ -1.09
CUX1-220ENST00000607092 OLFM4Q6UX06 510 aa8.25□□□□□ -1.09
CUX1-220ENST00000607092 SAPCD2Q86UD0 394 aa8.25□□□□□ -1.09
CUX1-220ENST00000607092 PGAP2Q9UHJ9 254 aa8.25□□□□□ -1.09
CUX1-220ENST00000607092 TSPYL4Q9UJ04 414 aa8.25□□□□□ -1.09
CUX1-220ENST00000607092 CELF2O95319 508 aaKnown RBP8.24□□□□□ -1.09
CUX1-220ENST00000607092 RGS19P49795 217 aa8.24□□□□□ -1.09
CUX1-220ENST00000607092 GRM1Q13255 1194 aa8.24□□□□□ -1.09
CUX1-220ENST00000607092 CYP4F22Q6NT55 531 aa8.24□□□□□ -1.09
CUX1-220ENST00000607092 TTLL7Q6ZT98 887 aa8.24□□□□□ -1.09
CUX1-220ENST00000607092 REM2Q8IYK8 340 aaPredicted RBP8.24□□□□□ -1.09
CUX1-220ENST00000607092 DPF2Q92785 391 aa8.24□□□□□ -1.09
CUX1-220ENST00000607092 CHMP4AQ9BY43 222 aa8.24□□□□□ -1.09
CUX1-220ENST00000607092 MIS18AQ9NYP9 233 aa8.24□□□□□ -1.09
CUX1-220ENST00000607092 THSD7BQ9C0I4 1608 aa8.24□□□□□ -1.09
CUX1-220ENST00000607092 UBN2Q6ZU65 1347 aa8.24□□□□□ -1.09
CUX1-220ENST00000607092 SH3TC1Q8TE82 1336 aa8.24□□□□□ -1.09
CUX1-220ENST00000607092 CCDC85CA6NKD9 419 aa8.23□□□□□ -1.09
CUX1-220ENST00000607092 RPS12P25398 132 aaKnown RBP8.23□□□□□ -1.09
CUX1-220ENST00000607092 CXCL9Q07325 125 aa8.23□□□□□ -1.09
CUX1-220ENST00000607092 GRAPQ13588 217 aa8.23□□□□□ -1.09
CUX1-220ENST00000607092 AOC3Q16853 763 aa8.23□□□□□ -1.09
CUX1-220ENST00000607092 IFNLR1Q8IU57 520 aaPredicted RBP8.23□□□□□ -1.09
CUX1-220ENST00000607092 GRAPLQ8TC17 118 aaPredicted RBP8.23□□□□□ -1.09
CUX1-220ENST00000607092 CCDC102AQ96A19 550 aa8.23□□□□□ -1.09
CUX1-220ENST00000607092 EYA3Q99504 573 aa8.23□□□□□ -1.09
CUX1-220ENST00000607092 ABCC4O15439 1325 aa8.23□□□□□ -1.09
CUX1-220ENST00000607092 KDM3BQ7LBC6 1761 aa8.22□□□□□ -1.09
CUX1-220ENST00000607092 NUP98P52948 1817 aa8.22□□□□□ -1.09
CUX1-220ENST00000607092 TCERG1O14776 1098 aaKnown RBP8.22□□□□□ -1.09
CUX1-220ENST00000607092 SLC34A2O95436 690 aa8.22□□□□□ -1.09
CUX1-220ENST00000607092 GMPSP49915 693 aaPredicted RBP8.22□□□□□ -1.09
CUX1-220ENST00000607092 CST9Q5W186 159 aa8.22□□□□□ -1.09
CUX1-220ENST00000607092 PLEKHF1Q96S99 279 aa8.22□□□□□ -1.09
CUX1-220ENST00000607092 SAGE1Q9NXZ1 904 aa8.22□□□□□ -1.09
CUX1-220ENST00000607092 PCDH10Q9P2E7 1040 aa8.22□□□□□ -1.09
CUX1-220ENST00000607092 TRMT112Q9UI30 125 aaKnown RBP8.22□□□□□ -1.09
CUX1-220ENST00000607092 TRPM7Q96QT4 1865 aa8.21□□□□□ -1.09
CUX1-220ENST00000607092 TRAF5O00463 557 aa8.21□□□□□ -1.1
CUX1-220ENST00000607092 HOXB7P09629 217 aa8.21□□□□□ -1.1
CUX1-220ENST00000607092 EIF2S2P20042 333 aaKnown RBP8.21□□□□□ -1.1
CUX1-220ENST00000607092 WASHC4Q2M389 1173 aa8.21□□□□□ -1.1
CUX1-220ENST00000607092 FAM161AQ3B820 660 aa8.21□□□□□ -1.1
CUX1-220ENST00000607092 NLRP10Q86W26 655 aa8.21□□□□□ -1.1
CUX1-220ENST00000607092 C2orf69Q8N8R5 385 aa8.21□□□□□ -1.1
CUX1-220ENST00000607092 NECTIN2Q92692 538 aa8.21□□□□□ -1.1
CUX1-220ENST00000607092 CNOT7Q9UIV1 285 aaKnown RBP8.21□□□□□ -1.1
CUX1-220ENST00000607092 G3V3G9 751 aa8.2□□□□□ -1.1
CUX1-220ENST00000607092 HUNKP57058 714 aa8.2□□□□□ -1.1
CUX1-220ENST00000607092 RIPK4P57078 832 aa8.2□□□□□ -1.1
CUX1-220ENST00000607092 TCIRG1Q13488 830 aa8.2□□□□□ -1.1
CUX1-220ENST00000607092 DCAF8Q5TAQ9 597 aa8.2□□□□□ -1.1
CUX1-220ENST00000607092 COPS6Q7L5N1 327 aa8.2□□□□□ -1.1
CUX1-220ENST00000607092 DCPSQ96C86 337 aaKnown RBP8.2□□□□□ -1.1
CUX1-220ENST00000607092 GLIS2Q9BZE0 524 aaPredicted RBP8.2□□□□□ -1.1
CUX1-220ENST00000607092 ZNF408Q9H9D4 720 aa8.2□□□□□ -1.1
CUX1-220ENST00000607092 COL4A5P29400 1685 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 ABCB7O75027 752 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 RAD17O75943 681 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 MMP14P50281 582 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 FKBP1BP68106 108 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 PDIA6Q15084 440 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 RALBP1Q15311 655 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 SF3B3Q15393 1217 aaKnown RBP8.19□□□□□ -1.1
CUX1-220ENST00000607092 RGMBQ6NW40 437 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 KRT26Q7Z3Y9 468 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 LRP10Q7Z4F1 713 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 SULF1Q8IWU6 871 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 PLBD2Q8NHP8 589 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 CFAP44Q96MT7 982 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 ZC3H12CQ9C0D7 883 aaKnown RBP8.19□□□□□ -1.1
CUX1-220ENST00000607092 MCOLN1Q9GZU1 580 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 HYPKQ9NX55 129 aa8.19□□□□□ -1.1
CUX1-220ENST00000607092 DBF4Q9UBU7 674 aaPredicted RBP8.19□□□□□ -1.1
CUX1-220ENST00000607092 LTBP1Q14766 1721 aa8.18□□□□□ -1.1
CUX1-220ENST00000607092 C6orf229H3BNL8 230 aa8.18□□□□□ -1.1
CUX1-220ENST00000607092 AOC2O75106 756 aa8.18□□□□□ -1.1
CUX1-220ENST00000607092 HCLS1P14317 486 aaPredicted RBP8.18□□□□□ -1.1
CUX1-220ENST00000607092 CALD1Q05682 793 aaKnown RBP8.18□□□□□ -1.1
CUX1-220ENST00000607092 AIMP1Q12904 312 aaKnown RBP8.18□□□□□ -1.1
CUX1-220ENST00000607092 TRIM28Q13263 835 aaKnown RBP8.18□□□□□ -1.1
CUX1-220ENST00000607092 DGKZQ13574 1117 aa8.18□□□□□ -1.1
CUX1-220ENST00000607092 ANKRD13DQ6ZTN6 518 aa8.18□□□□□ -1.1
CUX1-220ENST00000607092 C3orf67Q6ZVT6 689 aa8.18□□□□□ -1.1
CUX1-220ENST00000607092 MICALL2Q8IY33 904 aa8.18□□□□□ -1.1
CUX1-220ENST00000607092 XAGE3Q8WTP9 111 aa8.18□□□□□ -1.1
CUX1-220ENST00000607092 GBA2Q9HCG7 927 aaPredicted RBP8.18□□□□□ -1.1
CUX1-220ENST00000607092 NSFL1CQ9UNZ2 370 aaKnown RBP8.18□□□□□ -1.1
CUX1-220ENST00000607092 TMPOP42166 694 aaKnown RBP8.17□□□□□ -1.1
CUX1-220ENST00000607092 PKN2Q16513 984 aaKnown RBP8.17□□□□□ -1.1
CUX1-220ENST00000607092 HDGFL1Q5TGJ6 251 aa8.17□□□□□ -1.1
CUX1-220ENST00000607092 USP48Q86UV5 1035 aa8.17□□□□□ -1.1
CUX1-220ENST00000607092 THUMPD2Q9BTF0 503 aaKnown RBP8.17□□□□□ -1.1
CUX1-220ENST00000607092 ANKRD36CQ5JPF3 1778 aa8.17□□□□□ -1.1
CUX1-220ENST00000607092 PSMD14O00487 310 aa8.16□□□□□ -1.1
CUX1-220ENST00000607092 CHL1O00533 1208 aa8.16□□□□□ -1.1
CUX1-220ENST00000607092 ZNF157P51786 506 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms