RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 C3orf67Q6ZVT6 689 aa17.92■□□□□ 0.46
UPF1-211ENST00000600868 TNRC6CQ9HCJ0 1690 aaKnown RBP17.92■□□□□ 0.46
UPF1-211ENST00000600868 ANKRD31Q8N7Z5 1873 aa17.92■□□□□ 0.46
UPF1-211ENST00000600868 RTL9Q8NET4 1388 aa17.91■□□□□ 0.46
UPF1-211ENST00000600868 PDE6BP35913 854 aa17.91■□□□□ 0.46
UPF1-211ENST00000600868 POLA2Q14181 598 aa17.91■□□□□ 0.46
UPF1-211ENST00000600868 CRY2Q49AN0 593 aa17.91■□□□□ 0.46
UPF1-211ENST00000600868 SIRT2Q8IXJ6 389 aa17.91■□□□□ 0.46
UPF1-211ENST00000600868 PDZRN3Q9UPQ7 1066 aa17.91■□□□□ 0.46
UPF1-211ENST00000600868 PNMA6EA0A0J9YXQ4 647 aa17.9■□□□□ 0.46
UPF1-211ENST00000600868 SRGAP3O43295 1099 aa17.9■□□□□ 0.46
UPF1-211ENST00000600868 SSH3Q8TE77 659 aa17.9■□□□□ 0.46
UPF1-211ENST00000600868 GREM2Q9H772 168 aa17.9■□□□□ 0.46
UPF1-211ENST00000600868 KIF13BQ9NQT8 1826 aa17.89■□□□□ 0.45
UPF1-211ENST00000600868 HMMRO75330 724 aa17.89■□□□□ 0.45
UPF1-211ENST00000600868 FAM161AQ3B820 660 aa17.89■□□□□ 0.45
UPF1-211ENST00000600868 CHMP3Q9Y3E7 222 aa17.89■□□□□ 0.45
UPF1-211ENST00000600868 HOXA10P31260 410 aaPredicted RBP17.88■□□□□ 0.45
UPF1-211ENST00000600868 RFX5P48382 616 aaPredicted RBP17.88■□□□□ 0.45
UPF1-211ENST00000600868 IFIT5Q13325 482 aaKnown RBP17.88■□□□□ 0.45
UPF1-211ENST00000600868 HDAC1Q13547 482 aaPredicted RBP17.88■□□□□ 0.45
UPF1-211ENST00000600868 CCDC57Q2TAC2 916 aa17.88■□□□□ 0.45
UPF1-211ENST00000600868 CCDC85AQ96PX6 553 aaPredicted RBP17.88■□□□□ 0.45
UPF1-211ENST00000600868 ITGA6P23229 1130 aa17.87■□□□□ 0.45
UPF1-211ENST00000600868 RPGRQ92834 1020 aaKnown RBP17.87■□□□□ 0.45
UPF1-211ENST00000600868 RWDD1Q9H446 243 aaPredicted RBP17.87■□□□□ 0.45
UPF1-211ENST00000600868 PPP4R2Q9NY27 417 aa17.87■□□□□ 0.45
UPF1-211ENST00000600868 CD2APQ9Y5K6 639 aa17.87■□□□□ 0.45
UPF1-211ENST00000600868 ANKRD18BA2A2Z9 1011 aa17.86■□□□□ 0.45
UPF1-211ENST00000600868 H0YIN7 160 aa17.86■□□□□ 0.45
UPF1-211ENST00000600868 SRGNP10124 158 aa17.86■□□□□ 0.45
UPF1-211ENST00000600868 NPR1P16066 1061 aa17.86■□□□□ 0.45
UPF1-211ENST00000600868 DDX46Q7L014 1031 aaKnown RBP17.86■□□□□ 0.45
UPF1-211ENST00000600868 COPRSQ9NQ92 184 aa17.86■□□□□ 0.45
UPF1-211ENST00000600868 TGFB2P61812 414 aa17.85■□□□□ 0.45
UPF1-211ENST00000600868 PTPN12Q05209 780 aaKnown RBP17.85■□□□□ 0.45
UPF1-211ENST00000600868 C2CD5Q86YS7 1000 aa17.85■□□□□ 0.45
UPF1-211ENST00000600868 MASTLQ96GX5 879 aa17.85■□□□□ 0.45
UPF1-211ENST00000600868 RBM17Q96I25 401 aaKnown RBP17.85■□□□□ 0.45
UPF1-211ENST00000600868 CRAMP1Q96RY5 1269 aa17.85■□□□□ 0.45
UPF1-211ENST00000600868 CDC5LQ99459 802 aaKnown RBP17.85■□□□□ 0.45
UPF1-211ENST00000600868 SEC31BQ9NQW1 1179 aa17.85■□□□□ 0.45
UPF1-211ENST00000600868 STYK1Q6J9G0 422 aa17.84■□□□□ 0.45
UPF1-211ENST00000600868 FBXO3Q9UK99 471 aa17.84■□□□□ 0.45
UPF1-211ENST00000600868 COL11A2P13942 1736 aaPredicted RBP17.84■□□□□ 0.45
UPF1-211ENST00000600868 IGHDP01880 384 aa17.83■□□□□ 0.44
UPF1-211ENST00000600868 TAF7LQ5H9L4 462 aa17.83■□□□□ 0.44
UPF1-211ENST00000600868 CCDC136Q96JN2 1154 aa17.83■□□□□ 0.44
UPF1-211ENST00000600868 NOP58Q9Y2X3 529 aaKnown RBP17.83■□□□□ 0.44
UPF1-211ENST00000600868 GTF3C3Q9Y5Q9 886 aa17.83■□□□□ 0.44
UPF1-211ENST00000600868 CHRNA5P30532 468 aa17.82■□□□□ 0.44
UPF1-211ENST00000600868 ALDH1B1P30837 517 aa17.82■□□□□ 0.44
UPF1-211ENST00000600868 RPS8P62241 208 aaKnown RBP17.82■□□□□ 0.44
UPF1-211ENST00000600868 GRAPQ13588 217 aa17.82■□□□□ 0.44
UPF1-211ENST00000600868 ANKRD18AQ8IVF6 992 aa17.82■□□□□ 0.44
UPF1-211ENST00000600868 KLHDC4Q8TBB5 520 aa17.82■□□□□ 0.44
UPF1-211ENST00000600868 GRAPLQ8TC17 118 aaPredicted RBP17.82■□□□□ 0.44
UPF1-211ENST00000600868 ZNF594Q96JF6 807 aaPredicted RBP17.82■□□□□ 0.44
UPF1-211ENST00000600868 DCTPP1Q9H773 170 aa17.82■□□□□ 0.44
UPF1-211ENST00000600868 PA2G4Q9UQ80 394 aaKnown RBP17.82■□□□□ 0.44
UPF1-211ENST00000600868 LRP5O75197 1615 aa17.81■□□□□ 0.44
UPF1-211ENST00000600868 SURF6O75683 361 aaKnown RBP17.81■□□□□ 0.44
UPF1-211ENST00000600868 BBOX1O75936 387 aa17.81■□□□□ 0.44
UPF1-211ENST00000600868 IGHMBP2P38935 993 aaKnown RBP17.81■□□□□ 0.44
UPF1-211ENST00000600868 CELF1Q92879 486 aaKnown RBP17.81■□□□□ 0.44
UPF1-211ENST00000600868 DLEC1Q9Y238 1755 aa17.81■□□□□ 0.44
UPF1-211ENST00000600868 KIAA1551Q9HCM1 1747 aa17.81■□□□□ 0.44
UPF1-211ENST00000600868 TAF1P21675 1872 aa17.8■□□□□ 0.44
UPF1-211ENST00000600868 EYA2O00167 538 aa17.8■□□□□ 0.44
UPF1-211ENST00000600868 CIAO1O76071 339 aa17.8■□□□□ 0.44
UPF1-211ENST00000600868 DPEP1P16444 411 aa17.8■□□□□ 0.44
UPF1-211ENST00000600868 KCNA3P22001 575 aa17.8■□□□□ 0.44
UPF1-211ENST00000600868 HSP90AB4PQ58FF6 505 aa17.8■□□□□ 0.44
UPF1-211ENST00000600868 LDHAL6AQ6ZMR3 332 aa17.8■□□□□ 0.44
UPF1-211ENST00000600868 CNKSR1Q969H4 720 aa17.8■□□□□ 0.44
UPF1-211ENST00000600868 ZNF622Q969S3 477 aaKnown RBP eCLIP17.8■□□□□ 0.44
UPF1-211ENST00000600868 GCC1Q96CN9 775 aa17.8■□□□□ 0.44
UPF1-211ENST00000600868 MPHOSPH8Q99549 860 aa17.8■□□□□ 0.44
UPF1-211ENST00000600868 BSDC1Q9NW68 430 aaPredicted RBP17.8■□□□□ 0.44
UPF1-211ENST00000600868 PPP1R1BQ9UD71 204 aaPredicted RBP17.8■□□□□ 0.44
UPF1-211ENST00000600868 A0A0G2JLW4 131 aa17.79■□□□□ 0.44
UPF1-211ENST00000600868 G3BP1Q13283 466 aaKnown RBP eCLIP17.79■□□□□ 0.441e-6■□□□□ 10.2
UPF1-211ENST00000600868 TMC4Q7Z404 712 aa17.79■□□□□ 0.44
UPF1-211ENST00000600868 SMC5Q8IY18 1101 aa17.79■□□□□ 0.44
UPF1-211ENST00000600868 RIPOR2Q9Y4F9 1068 aa17.79■□□□□ 0.44
UPF1-211ENST00000600868 COL4A1P02462 1669 aa17.79■□□□□ 0.44
UPF1-211ENST00000600868 KDM2BQ8NHM5 1336 aa17.78■□□□□ 0.44
UPF1-211ENST00000600868 RAB11FIP3O75154 756 aa17.78■□□□□ 0.44
UPF1-211ENST00000600868 IL15P40933 162 aaPredicted RBP17.78■□□□□ 0.44
UPF1-211ENST00000600868 B4GALNT3Q6L9W6 998 aa17.78■□□□□ 0.44
UPF1-211ENST00000600868 ATG9AQ7Z3C6 839 aa17.78■□□□□ 0.44
UPF1-211ENST00000600868 KLHL34Q8N239 644 aa17.78■□□□□ 0.44
UPF1-211ENST00000600868 PUS3Q9BZE2 481 aaKnown RBP17.78■□□□□ 0.44
UPF1-211ENST00000600868 SIL1Q9H173 461 aa17.78■□□□□ 0.44
UPF1-211ENST00000600868 CNNM1Q9NRU3 951 aa17.78■□□□□ 0.44
UPF1-211ENST00000600868 EXOC6BQ9Y2D4 811 aa17.78■□□□□ 0.44
UPF1-211ENST00000600868 LRRC24Q50LG9 513 aa17.77■□□□□ 0.44
UPF1-211ENST00000600868 CENPQQ7L2Z9 268 aaPredicted RBP17.77■□□□□ 0.44
UPF1-211ENST00000600868 ERC1Q8IUD2 1116 aa17.77■□□□□ 0.44
UPF1-211ENST00000600868 TTLL6Q8N841 843 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms