RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ZC3H15Q8WU90 426 aaKnown RBP8.08□□□□□ -1.12
VRK3-220ENST00000600259 ZIC5Q96T25 663 aa8.08□□□□□ -1.12
VRK3-220ENST00000600259 KDM3BQ7LBC6 1761 aa8.07□□□□□ -1.12
VRK3-220ENST00000600259 RAD17O75943 681 aa8.07□□□□□ -1.12
VRK3-220ENST00000600259 CELF2O95319 508 aaKnown RBP8.07□□□□□ -1.12
VRK3-220ENST00000600259 EIF2S2P20042 333 aaKnown RBP8.07□□□□□ -1.12
VRK3-220ENST00000600259 FAM161AQ3B820 660 aa8.07□□□□□ -1.12
VRK3-220ENST00000600259 CIAPIN1Q6FI81 312 aa8.07□□□□□ -1.12
VRK3-220ENST00000600259 DLK2Q6UY11 383 aa8.07□□□□□ -1.12
VRK3-220ENST00000600259 SUPT20HQ8NEM7 779 aa8.07□□□□□ -1.12
VRK3-220ENST00000600259 TRPM4Q8TD43 1214 aa8.07□□□□□ -1.12
VRK3-220ENST00000600259 BABAM1Q9NWV8 329 aa8.07□□□□□ -1.12
VRK3-220ENST00000600259 CNOT7Q9UIV1 285 aaKnown RBP8.07□□□□□ -1.12
VRK3-220ENST00000600259 TSPYL4Q9UJ04 414 aa8.07□□□□□ -1.12
VRK3-220ENST00000600259 TSKSQ9UJT2 592 aa8.07□□□□□ -1.12
VRK3-220ENST00000600259 THSD7BQ9C0I4 1608 aa8.07□□□□□ -1.12
VRK3-220ENST00000600259 CHL1O00533 1208 aa8.06□□□□□ -1.12
VRK3-220ENST00000600259 RIPK4P57078 832 aa8.06□□□□□ -1.12
VRK3-220ENST00000600259 GRAPQ13588 217 aa8.06□□□□□ -1.12
VRK3-220ENST00000600259 DPP8Q6V1X1 898 aaPredicted RBP8.06□□□□□ -1.12
VRK3-220ENST00000600259 CDC37L1Q7L3B6 337 aa8.06□□□□□ -1.12
VRK3-220ENST00000600259 GRAPLQ8TC17 118 aaPredicted RBP8.06□□□□□ -1.12
VRK3-220ENST00000600259 XAGE3Q8WTP9 111 aa8.06□□□□□ -1.12
VRK3-220ENST00000600259 CDHR2Q9BYE9 1310 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 LAMB4A4D0S4 1761 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 CCDC85CA6NKD9 419 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 CA12O43570 354 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 EGFRP00533 1210 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 NEFMP07197 916 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 TMPOP42166 694 aaKnown RBP8.05□□□□□ -1.12
VRK3-220ENST00000600259 BRPF1P55201 1214 aaPredicted RBP8.05□□□□□ -1.12
VRK3-220ENST00000600259 GRM1Q13255 1194 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 TNIP1Q15025 636 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 SF3B3Q15393 1217 aaKnown RBP8.05□□□□□ -1.12
VRK3-220ENST00000600259 KRT24Q2M2I5 525 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 HSP90AB3PQ58FF7 597 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 DDX46Q7L014 1031 aaKnown RBP8.05□□□□□ -1.12
VRK3-220ENST00000600259 USP48Q86UV5 1035 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 DPF2Q92785 391 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 ISCA1Q9BUE6 129 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 MCOLN1Q9GZU1 580 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 KCNQ5Q9NR82 932 aa8.05□□□□□ -1.12
VRK3-220ENST00000600259 TRMT112Q9UI30 125 aaKnown RBP8.05□□□□□ -1.12
VRK3-220ENST00000600259 ZBTB12Q9Y330 459 aaPredicted RBP8.05□□□□□ -1.12
VRK3-220ENST00000600259 DLG5Q8TDM6 1919 aa8.04□□□□□ -1.12
VRK3-220ENST00000600259 FAM155AB1AL88 458 aaPredicted RBP8.04□□□□□ -1.12
VRK3-220ENST00000600259 AIMP1Q12904 312 aaKnown RBP8.04□□□□□ -1.12
VRK3-220ENST00000600259 TRIM28Q13263 835 aaKnown RBP8.04□□□□□ -1.12
VRK3-220ENST00000600259 PAXIP1Q6ZW49 1069 aaPredicted RBP8.04□□□□□ -1.12
VRK3-220ENST00000600259 SAMD7Q7Z3H4 446 aa8.04□□□□□ -1.12
VRK3-220ENST00000600259 NECTIN2Q92692 538 aa8.04□□□□□ -1.12
VRK3-220ENST00000600259 CELF1Q92879 486 aaKnown RBP8.04□□□□□ -1.12
VRK3-220ENST00000600259 BEGAINQ9BUH8 593 aa8.04□□□□□ -1.12
VRK3-220ENST00000600259 PNNQ9H307 717 aaKnown RBP8.04□□□□□ -1.12
VRK3-220ENST00000600259 POLLQ9UGP5 575 aa8.04□□□□□ -1.12
VRK3-220ENST00000600259 TRIM35Q9UPQ4 493 aa8.04□□□□□ -1.12
VRK3-220ENST00000600259 DUOX1Q9NRD9 1551 aa8.04□□□□□ -1.12
VRK3-220ENST00000600259 SH3TC1Q8TE82 1336 aa8.03□□□□□ -1.12
VRK3-220ENST00000600259 TRPM7Q96QT4 1865 aa8.03□□□□□ -1.12
VRK3-220ENST00000600259 H7C1D1 291 aa8.03□□□□□ -1.12
VRK3-220ENST00000600259 PSMD14O00487 310 aa8.03□□□□□ -1.12
VRK3-220ENST00000600259 MLLT1Q03111 559 aaPredicted RBP8.03□□□□□ -1.12
VRK3-220ENST00000600259 TMC4Q7Z404 712 aa8.03□□□□□ -1.12
VRK3-220ENST00000600259 MICALL2Q8IY33 904 aa8.03□□□□□ -1.12
VRK3-220ENST00000600259 PLBD2Q8NHP8 589 aa8.03□□□□□ -1.12
VRK3-220ENST00000600259 ZNF428Q96B54 188 aa8.03□□□□□ -1.12
VRK3-220ENST00000600259 BCL2L13Q9BXK5 485 aa8.03□□□□□ -1.12
VRK3-220ENST00000600259 TMX4Q9H1E5 349 aaPredicted RBP8.03□□□□□ -1.12
VRK3-220ENST00000600259 MAPK8IP3Q9UPT6 1336 aa8.03□□□□□ -1.12
VRK3-220ENST00000600259 RTL9Q8NET4 1388 aa8.02□□□□□ -1.13
VRK3-220ENST00000600259 VIL1P09327 827 aaKnown RBP8.02□□□□□ -1.13
VRK3-220ENST00000600259 HUNKP57058 714 aa8.02□□□□□ -1.13
VRK3-220ENST00000600259 GPSM2P81274 684 aa8.02□□□□□ -1.13
VRK3-220ENST00000600259 NOGQ13253 232 aa8.02□□□□□ -1.13
VRK3-220ENST00000600259 WASHC4Q2M389 1173 aa8.02□□□□□ -1.13
VRK3-220ENST00000600259 TBC1D10BQ4KMP7 808 aaPredicted RBP8.02□□□□□ -1.13
VRK3-220ENST00000600259 ANKRD13DQ6ZTN6 518 aa8.02□□□□□ -1.13
VRK3-220ENST00000600259 FAM89AQ96GI7 184 aa8.02□□□□□ -1.13
VRK3-220ENST00000600259 ZNF408Q9H9D4 720 aa8.02□□□□□ -1.13
VRK3-220ENST00000600259 DBNDD1Q9H9R9 158 aa8.02□□□□□ -1.13
VRK3-220ENST00000600259 CHPF2Q9P2E5 772 aa8.02□□□□□ -1.13
VRK3-220ENST00000600259 NSFL1CQ9UNZ2 370 aaKnown RBP8.02□□□□□ -1.13
VRK3-220ENST00000600259 COL4A1P02462 1669 aa8.02□□□□□ -1.13
VRK3-220ENST00000600259 ATP5J2-PTCD1G3V325 749 aa8.01□□□□□ -1.13
VRK3-220ENST00000600259 RIMBP2O15034 1052 aa8.01□□□□□ -1.13
VRK3-220ENST00000600259 TNRC18O15417 2968 aaPredicted RBP8.01□□□□□ -1.13
VRK3-220ENST00000600259 RPS12P25398 132 aaKnown RBP8.01□□□□□ -1.13
VRK3-220ENST00000600259 RPS8P62241 208 aaKnown RBP8.01□□□□□ -1.13
VRK3-220ENST00000600259 KIF23Q02241 960 aaPredicted RBP8.01□□□□□ -1.13
VRK3-220ENST00000600259 DOK7Q18PE1 504 aa8.01□□□□□ -1.13
VRK3-220ENST00000600259 RGMBQ6NW40 437 aa8.01□□□□□ -1.13
VRK3-220ENST00000600259 KRT26Q7Z3Y9 468 aa8.01□□□□□ -1.13
VRK3-220ENST00000600259 TBC1D16Q8TBP0 767 aa8.01□□□□□ -1.13
VRK3-220ENST00000600259 PODXL2Q9NZ53 605 aa8.01□□□□□ -1.13
VRK3-220ENST00000600259 ASTN2O75129 1339 aaPredicted RBP8.01□□□□□ -1.13
VRK3-220ENST00000600259 ADM5C9JUS6 153 aa8□□□□□ -1.13
VRK3-220ENST00000600259 C6orf229H3BNL8 230 aa8□□□□□ -1.13
VRK3-220ENST00000600259 ECE2O60344 883 aa8□□□□□ -1.13
VRK3-220ENST00000600259 HOXB7P09629 217 aa8□□□□□ -1.13
VRK3-220ENST00000600259 LMOD3Q0VAK6 560 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms