RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 RTKN2Q8IZC4 609 aa15.37■□□□□ 0.05
SHKBP1-213ENST00000597325 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.37■□□□□ 0.05
SHKBP1-213ENST00000597325 CNBD1Q8NA66 436 aa15.37■□□□□ 0.05
SHKBP1-213ENST00000597325 NECTIN2Q92692 538 aa15.37■□□□□ 0.05
SHKBP1-213ENST00000597325 BCL2L13Q9BXK5 485 aa15.37■□□□□ 0.05
SHKBP1-213ENST00000597325 TEX13AQ9BXU3 409 aaPredicted RBP15.37■□□□□ 0.05
SHKBP1-213ENST00000597325 HPS5Q9UPZ3 1129 aa15.37■□□□□ 0.05
SHKBP1-213ENST00000597325 KIF16BQ96L93 1317 aa15.37■□□□□ 0.05
SHKBP1-213ENST00000597325 RANBP2P49792 3224 aaKnown RBP15.37■□□□□ 0.05
SHKBP1-213ENST00000597325 LMOD1P29536 600 aaPredicted RBP15.36■□□□□ 0.05
SHKBP1-213ENST00000597325 CTU1Q7Z7A3 348 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-213ENST00000597325 SYNE4Q8N205 404 aa15.36■□□□□ 0.05
SHKBP1-213ENST00000597325 SSH1Q8WYL5 1049 aa15.36■□□□□ 0.05
SHKBP1-213ENST00000597325 PRAMEF22A3QJZ6 481 aa15.35■□□□□ 0.05
SHKBP1-213ENST00000597325 KLRG2A4D1S0 409 aaPredicted RBP15.35■□□□□ 0.05
SHKBP1-213ENST00000597325 TCERG1O14776 1098 aaKnown RBP15.35■□□□□ 0.05
SHKBP1-213ENST00000597325 SUPT16HQ9Y5B9 1047 aaKnown RBP15.35■□□□□ 0.05
SHKBP1-213ENST00000597325 GJA3Q9Y6H8 435 aa15.35■□□□□ 0.05
SHKBP1-213ENST00000597325 A0A087WZG4 1122 aa15.34■□□□□ 0.05
SHKBP1-213ENST00000597325 BCAR3O75815 825 aa15.34■□□□□ 0.05
SHKBP1-213ENST00000597325 STARD3NLO95772 234 aa15.34■□□□□ 0.05
SHKBP1-213ENST00000597325 NPR1P16066 1061 aa15.34■□□□□ 0.05
SHKBP1-213ENST00000597325 ST5P78524 1137 aa15.34■□□□□ 0.05
SHKBP1-213ENST00000597325 PSMD1Q99460 953 aa15.34■□□□□ 0.05
SHKBP1-213ENST00000597325 DBF4Q9UBU7 674 aaPredicted RBP15.34■□□□□ 0.05
SHKBP1-213ENST00000597325 ERBB4Q15303 1308 aa15.34■□□□□ 0.05
SHKBP1-213ENST00000597325 FAM155AB1AL88 458 aaPredicted RBP15.33■□□□□ 0.04
SHKBP1-213ENST00000597325 RRP1P56182 461 aaKnown RBP15.33■□□□□ 0.04
SHKBP1-213ENST00000597325 JDP2Q8WYK2 163 aa15.33■□□□□ 0.04
SHKBP1-213ENST00000597325 FRAT1Q92837 279 aaPredicted RBP15.33■□□□□ 0.04
SHKBP1-213ENST00000597325 GLIS2Q9BZE0 524 aaPredicted RBP15.33■□□□□ 0.04
SHKBP1-213ENST00000597325 RNF186Q9NXI6 227 aa15.33■□□□□ 0.04
SHKBP1-213ENST00000597325 CHPF2Q9P2E5 772 aa15.33■□□□□ 0.04
SHKBP1-213ENST00000597325 PGAP2Q9UHJ9 254 aa15.33■□□□□ 0.04
SHKBP1-213ENST00000597325 DLL1O00548 723 aa15.32■□□□□ 0.04
SHKBP1-213ENST00000597325 EIF6P56537 245 aaKnown RBP15.32■□□□□ 0.04
SHKBP1-213ENST00000597325 MRPL50Q8N5N7 158 aaKnown RBP15.32■□□□□ 0.04
SHKBP1-213ENST00000597325 SETDB2Q96T68 719 aa15.32■□□□□ 0.04
SHKBP1-213ENST00000597325 TBC1D2BQ9UPU7 963 aa15.32■□□□□ 0.04
SHKBP1-213ENST00000597325 USP16Q9Y5T5 823 aa15.32■□□□□ 0.04
SHKBP1-213ENST00000597325 CUL9Q8IWT3 2517 aa15.32■□□□□ 0.04
SHKBP1-213ENST00000597325 IPO8O15397 1037 aaKnown RBP15.31■□□□□ 0.04
SHKBP1-213ENST00000597325 TRPA1O75762 1119 aa15.31■□□□□ 0.04
SHKBP1-213ENST00000597325 SLC4A2P04920 1241 aa15.31■□□□□ 0.04
SHKBP1-213ENST00000597325 NEFLP07196 543 aa15.31■□□□□ 0.04
SHKBP1-213ENST00000597325 ADARB2Q9NS39 739 aaKnown RBP15.31■□□□□ 0.04
SHKBP1-213ENST00000597325 AKAP11Q9UKA4 1901 aa15.31■□□□□ 0.04
SHKBP1-213ENST00000597325 CACNA1FO60840 1977 aa15.31■□□□□ 0.04
SHKBP1-213ENST00000597325 ZKSCAN2Q63HK3 967 aa15.3■□□□□ 0.04
SHKBP1-213ENST00000597325 HYPKQ9NX55 129 aa15.3■□□□□ 0.04
SHKBP1-213ENST00000597325 PTPRCP08575 1304 aa15.29■□□□□ 0.04
SHKBP1-213ENST00000597325 CAMTA2O94983 1202 aa15.29■□□□□ 0.04
SHKBP1-213ENST00000597325 HUNKP57058 714 aa15.29■□□□□ 0.04
SHKBP1-213ENST00000597325 GPRC5DQ9NZD1 345 aa15.29■□□□□ 0.04
SHKBP1-213ENST00000597325 NOB1Q9ULX3 412 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-213ENST00000597325 NPHP1O15259 732 aa15.28■□□□□ 0.04
SHKBP1-213ENST00000597325 PLIN1O60240 522 aa15.28■□□□□ 0.04
SHKBP1-213ENST00000597325 MS4A1P11836 297 aa15.28■□□□□ 0.04
SHKBP1-213ENST00000597325 MYL6BP14649 208 aa15.28■□□□□ 0.04
SHKBP1-213ENST00000597325 PKN2Q16513 984 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-213ENST00000597325 NPM2Q86SE8 214 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-213ENST00000597325 FTSJ3Q8IY81 847 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-213ENST00000597325 API5Q9BZZ5 524 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-213ENST00000597325 ZNF408Q9H9D4 720 aa15.28■□□□□ 0.04
SHKBP1-213ENST00000597325 DDX58O95786 925 aaKnown RBP15.27■□□□□ 0.04
SHKBP1-213ENST00000597325 ANXA1P04083 346 aa15.27■□□□□ 0.04
SHKBP1-213ENST00000597325 A1BGP04217 495 aa15.27■□□□□ 0.04
SHKBP1-213ENST00000597325 KIF23Q02241 960 aaPredicted RBP15.27■□□□□ 0.04
SHKBP1-213ENST00000597325 FLIIQ13045 1269 aa15.27■□□□□ 0.04
SHKBP1-213ENST00000597325 FKBP5Q13451 457 aaPredicted RBP15.27■□□□□ 0.04
SHKBP1-213ENST00000597325 PROSER3Q2NL68 480 aa15.27■□□□□ 0.04
SHKBP1-213ENST00000597325 ATF7IPQ6VMQ6 1270 aa15.27■□□□□ 0.04
SHKBP1-213ENST00000597325 ARHGAP45Q92619 1136 aa15.27■□□□□ 0.04
SHKBP1-213ENST00000597325 UNC80Q8N2C7 3258 aa15.27■□□□□ 0.03
SHKBP1-213ENST00000597325 IL6STP40189 918 aaPredicted RBP15.26■□□□□ 0.03
SHKBP1-213ENST00000597325 PIP4K2AP48426 406 aaPredicted RBP15.26■□□□□ 0.03
SHKBP1-213ENST00000597325 RGMBQ6NW40 437 aa15.26■□□□□ 0.03
SHKBP1-213ENST00000597325 ZNF330Q9Y3S2 320 aaPredicted RBP15.26■□□□□ 0.03
SHKBP1-213ENST00000597325 TRIM27P14373 513 aa15.25■□□□□ 0.03
SHKBP1-213ENST00000597325 ALDH1B1P30837 517 aa15.25■□□□□ 0.03
SHKBP1-213ENST00000597325 HIRAP54198 1017 aaPredicted RBP15.25■□□□□ 0.03
SHKBP1-213ENST00000597325 PDIA6Q15084 440 aa15.25■□□□□ 0.03
SHKBP1-213ENST00000597325 G2E3Q7L622 706 aa15.25■□□□□ 0.03
SHKBP1-213ENST00000597325 ZC3H15Q8WU90 426 aaKnown RBP15.25■□□□□ 0.03
SHKBP1-213ENST00000597325 CSRNP1Q96S65 589 aa15.25■□□□□ 0.03
SHKBP1-213ENST00000597325 NBPF26B4DH59 902 aa15.24■□□□□ 0.03
SHKBP1-213ENST00000597325 AIMP1Q12904 312 aaKnown RBP15.24■□□□□ 0.03
SHKBP1-213ENST00000597325 NBPF10Q6P3W6 841 aaKnown RBP15.24■□□□□ 0.03
SHKBP1-213ENST00000597325 KIF6Q6ZMV9 814 aa15.24■□□□□ 0.03
SHKBP1-213ENST00000597325 CDC37L1Q7L3B6 337 aa15.24■□□□□ 0.03
SHKBP1-213ENST00000597325 NBPF5PQ86XG9 351 aaPredicted RBP15.24■□□□□ 0.03
SHKBP1-213ENST00000597325 DZIP1LQ8IYY4 767 aaKnown RBP15.24■□□□□ 0.03
SHKBP1-213ENST00000597325 XAGE3Q8WTP9 111 aa15.24■□□□□ 0.03
SHKBP1-213ENST00000597325 PHAXQ9H814 394 aaKnown RBP15.24■□□□□ 0.03
SHKBP1-213ENST00000597325 LAMA3Q16787 3333 aa15.23■□□□□ 0.03
SHKBP1-213ENST00000597325 PDE3AQ14432 1141 aa15.23■□□□□ 0.03
SHKBP1-213ENST00000597325 DLK2Q6UY11 383 aa15.23■□□□□ 0.03
SHKBP1-213ENST00000597325 LARGE2Q8N3Y3 721 aa15.23■□□□□ 0.03
SHKBP1-213ENST00000597325 CCDC102AQ96A19 550 aa15.23■□□□□ 0.03
SHKBP1-213ENST00000597325 CLUAP1Q96AJ1 413 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms