RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 RUFY2Q8WXA3 655 aa20.47■□□□□ 0.87
SHKBP1-205ENST00000594973 NUP188Q5SRE5 1749 aa20.47■□□□□ 0.87
SHKBP1-205ENST00000594973 TCIRG1Q13488 830 aa20.46■□□□□ 0.87
SHKBP1-205ENST00000594973 EDC3Q96F86 508 aaKnown RBP20.45■□□□□ 0.87
SHKBP1-205ENST00000594973 TMX3Q96JJ7 454 aa20.45■□□□□ 0.87
SHKBP1-205ENST00000594973 FAM227BQ96M60 508 aa20.45■□□□□ 0.87
SHKBP1-205ENST00000594973 FSD1Q9BTV5 496 aa20.45■□□□□ 0.87
SHKBP1-205ENST00000594973 ISCA1Q9BUE6 129 aa20.45■□□□□ 0.87
SHKBP1-205ENST00000594973 NDUFB9Q9Y6M9 179 aa20.45■□□□□ 0.87
SHKBP1-205ENST00000594973 EPB41L2O43491 1005 aaKnown RBP20.45■□□□□ 0.86
SHKBP1-205ENST00000594973 ZNF594Q96JF6 807 aaPredicted RBP20.45■□□□□ 0.86
SHKBP1-205ENST00000594973 ITGB4P16144 1822 aa20.45■□□□□ 0.86
SHKBP1-205ENST00000594973 PTH1RQ03431 593 aa20.44■□□□□ 0.86
SHKBP1-205ENST00000594973 DBNDD2Q9BQY9 259 aa20.44■□□□□ 0.86
SHKBP1-205ENST00000594973 NMIQ13287 307 aaPredicted RBP20.44■□□□□ 0.86
SHKBP1-205ENST00000594973 DDB1Q16531 1140 aa20.44■□□□□ 0.86
SHKBP1-205ENST00000594973 RASEFQ8IZ41 740 aa20.44■□□□□ 0.86
SHKBP1-205ENST00000594973 FAM89AQ96GI7 184 aa20.44■□□□□ 0.86
SHKBP1-205ENST00000594973 CCDC85AQ96PX6 553 aaPredicted RBP20.44■□□□□ 0.86
SHKBP1-205ENST00000594973 SNX14Q9Y5W7 946 aa20.44■□□□□ 0.86
SHKBP1-205ENST00000594973 SPATA31A1Q5TZJ5 1347 aa20.44■□□□□ 0.86
SHKBP1-205ENST00000594973 BAG4O95429 457 aaKnown RBP20.43■□□□□ 0.86
SHKBP1-205ENST00000594973 CYP19A1P11511 503 aaPredicted RBP20.43■□□□□ 0.86
SHKBP1-205ENST00000594973 PKP1Q13835 747 aa20.43■□□□□ 0.86
SHKBP1-205ENST00000594973 GPTP24298 496 aa20.43■□□□□ 0.86
SHKBP1-205ENST00000594973 ATG9AQ7Z3C6 839 aa20.43■□□□□ 0.86
SHKBP1-205ENST00000594973 ACSBG1Q96GR2 724 aa20.43■□□□□ 0.86
SHKBP1-205ENST00000594973 ZBTB1Q9Y2K1 713 aa20.43■□□□□ 0.86
SHKBP1-205ENST00000594973 MCM2P49736 904 aa20.42■□□□□ 0.86
SHKBP1-205ENST00000594973 HLFQ16534 295 aa20.42■□□□□ 0.86
SHKBP1-205ENST00000594973 NEUROD6Q96NK8 337 aa20.42■□□□□ 0.86
SHKBP1-205ENST00000594973 CCDC39Q9UFE4 941 aa20.42■□□□□ 0.86
SHKBP1-205ENST00000594973 PHLPP1O60346 1717 aa20.42■□□□□ 0.86
SHKBP1-205ENST00000594973 TJP1Q07157 1748 aa20.42■□□□□ 0.86
SHKBP1-205ENST00000594973 ZSCAN20P17040 1043 aaPredicted RBP20.42■□□□□ 0.86
SHKBP1-205ENST00000594973 LRRC24Q50LG9 513 aa20.42■□□□□ 0.86
SHKBP1-205ENST00000594973 IL17RAQ96F46 866 aa20.42■□□□□ 0.86
SHKBP1-205ENST00000594973 DNAJC2Q99543 621 aaKnown RBP20.42■□□□□ 0.86
SHKBP1-205ENST00000594973 GTPBP4Q9BZE4 634 aaKnown RBP20.42■□□□□ 0.86
SHKBP1-205ENST00000594973 MAP3K15Q6ZN16 1313 aa20.41■□□□□ 0.86
SHKBP1-205ENST00000594973 ATP5JP18859 108 aa20.41■□□□□ 0.86
SHKBP1-205ENST00000594973 A0A0D9SFI3 127 aa20.41■□□□□ 0.86
SHKBP1-205ENST00000594973 HIP1O00291 1037 aa20.41■□□□□ 0.86
SHKBP1-205ENST00000594973 CWC22Q9HCG8 908 aaKnown RBP20.41■□□□□ 0.86
SHKBP1-205ENST00000594973 TIMM10P62072 90 aa20.4■□□□□ 0.86
SHKBP1-205ENST00000594973 ZSCAN23Q3MJ62 389 aa20.4■□□□□ 0.86
SHKBP1-205ENST00000594973 PRPF40BQ6NWY9 871 aaKnown RBP20.4■□□□□ 0.86
SHKBP1-205ENST00000594973 SYNE4Q8N205 404 aa20.4■□□□□ 0.86
SHKBP1-205ENST00000594973 PLCH1Q4KWH8 1693 aa20.4■□□□□ 0.86
SHKBP1-205ENST00000594973 KIF20AO95235 890 aa20.39■□□□□ 0.86
SHKBP1-205ENST00000594973 GIGYF2Q6Y7W6 1299 aaKnown RBP20.39■□□□□ 0.86
SHKBP1-205ENST00000594973 CDCA7Q9BWT1 371 aaPredicted RBP20.39■□□□□ 0.86
SHKBP1-205ENST00000594973 PUS3Q9BZE2 481 aaKnown RBP20.39■□□□□ 0.86
SHKBP1-205ENST00000594973 ZHX1Q9UKY1 873 aaPredicted RBP20.39■□□□□ 0.86
SHKBP1-205ENST00000594973 IL15P40933 162 aaPredicted RBP20.39■□□□□ 0.85
SHKBP1-205ENST00000594973 KCNJ4P48050 445 aa20.39■□□□□ 0.85
SHKBP1-205ENST00000594973 NUCB2P80303 420 aa20.39■□□□□ 0.85
SHKBP1-205ENST00000594973 CCDC57Q2TAC2 916 aa20.39■□□□□ 0.85
SHKBP1-205ENST00000594973 CCDC171Q6TFL3 1326 aa20.38■□□□□ 0.85
SHKBP1-205ENST00000594973 EYA2O00167 538 aa20.38■□□□□ 0.85
SHKBP1-205ENST00000594973 TRIM28Q13263 835 aaKnown RBP20.38■□□□□ 0.85
SHKBP1-205ENST00000594973 RBSNQ9H1K0 784 aa20.38■□□□□ 0.85
SHKBP1-205ENST00000594973 TBC1D2BQ9UPU7 963 aa20.38■□□□□ 0.85
SHKBP1-205ENST00000594973 THRAP3Q9Y2W1 955 aaKnown RBP20.38■□□□□ 0.85
SHKBP1-205ENST00000594973 TOM1O60784 492 aa20.38■□□□□ 0.85
SHKBP1-205ENST00000594973 CPA1P15085 419 aa20.38■□□□□ 0.85
SHKBP1-205ENST00000594973 ZBTB38Q8NAP3 1195 aaPredicted RBP20.38■□□□□ 0.85
SHKBP1-205ENST00000594973 PCCAP05165 728 aaPredicted RBP20.37■□□□□ 0.85
SHKBP1-205ENST00000594973 MARCH10Q8NA82 808 aaPredicted RBP20.37■□□□□ 0.85
SHKBP1-205ENST00000594973 LARP6Q9BRS8 491 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-205ENST00000594973 CASTP20810 708 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-205ENST00000594973 DDX46Q7L014 1031 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-205ENST00000594973 LRP6O75581 1613 aa20.36■□□□□ 0.85
SHKBP1-205ENST00000594973 CHGBP05060 677 aa20.36■□□□□ 0.85
SHKBP1-205ENST00000594973 RBM8AQ9Y5S9 174 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-205ENST00000594973 SPATA31A5Q5VU36 1347 aa20.36■□□□□ 0.85
SHKBP1-205ENST00000594973 SPATA31A7Q8IWB4 1347 aa20.36■□□□□ 0.85
SHKBP1-205ENST00000594973 ADCK5Q3MIX3 580 aa20.36■□□□□ 0.85
SHKBP1-205ENST00000594973 ZNF589Q86UQ0 364 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-205ENST00000594973 NLRP10Q86W26 655 aa20.36■□□□□ 0.85
SHKBP1-205ENST00000594973 MYRIPQ8NFW9 859 aa20.36■□□□□ 0.85
SHKBP1-205ENST00000594973 PRDM10Q9NQV6 1147 aa20.36■□□□□ 0.85
SHKBP1-205ENST00000594973 CUL4AQ13619 759 aa20.35■□□□□ 0.85
SHKBP1-205ENST00000594973 TAF7LQ5H9L4 462 aa20.35■□□□□ 0.85
SHKBP1-205ENST00000594973 DZIP3Q86Y13 1208 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-205ENST00000594973 JAKMIP1Q96N16 626 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-205ENST00000594973 HAUS7Q99871 368 aa20.35■□□□□ 0.85
SHKBP1-205ENST00000594973 CYP2E1P05181 493 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-205ENST00000594973 FOXD4L5Q5VV16 416 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-205ENST00000594973 FOXD4L4Q8WXT5 416 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-205ENST00000594973 DOT1LQ8TEK3 1739 aa20.34■□□□□ 0.85
SHKBP1-205ENST00000594973 LETM1O95202 739 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-205ENST00000594973 AK2P54819 239 aa20.34■□□□□ 0.85
SHKBP1-205ENST00000594973 NECTIN1Q15223 517 aa20.34■□□□□ 0.85
SHKBP1-205ENST00000594973 CAVIN1Q6NZI2 390 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-205ENST00000594973 MAP4K1Q92918 833 aa20.34■□□□□ 0.85
SHKBP1-205ENST00000594973 LMBRD1Q9NUN5 540 aa20.34■□□□□ 0.85
SHKBP1-205ENST00000594973 A0A1B0GUL7 405 aa20.33■□□□□ 0.85
SHKBP1-205ENST00000594973 CIAO1O76071 339 aa20.33■□□□□ 0.85
SHKBP1-205ENST00000594973 ATP6V1AP38606 617 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms