RNA–Protein interactions for RNA: ENST00000592533.5

ZNF540-210, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 2 BASIC

Gene ZNF540, Length 3,147 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-210ENST00000592533 MEGF6O75095 1541 aa13.8□□□□□ -0.2
ZNF540-210ENST00000592533 VPS37CA5D8V6 355 aaPredicted RBP13.8□□□□□ -0.2
ZNF540-210ENST00000592533 TPM3P06753 285 aa13.8□□□□□ -0.2
ZNF540-210ENST00000592533 GIMAP6Q6P9H5 292 aa13.8□□□□□ -0.2
ZNF540-210ENST00000592533 RBM43Q6ZSC3 357 aaKnown RBP13.8□□□□□ -0.2
ZNF540-210ENST00000592533 RBM33Q96EV2 1170 aaKnown RBP13.8□□□□□ -0.2
ZNF540-210ENST00000592533 CCDC192P0DO97 292 aa13.8□□□□□ -0.2
ZNF540-210ENST00000592533 COL9A3Q14050 684 aaPredicted RBP13.8□□□□□ -0.2
ZNF540-210ENST00000592533 EPHA10Q5JZY3 1008 aa13.8□□□□□ -0.2
ZNF540-210ENST00000592533 MTERF4Q7Z6M4 381 aaKnown RBP13.8□□□□□ -0.2
ZNF540-210ENST00000592533 ZNF589Q86UQ0 364 aaPredicted RBP13.8□□□□□ -0.2
ZNF540-210ENST00000592533 SCAND2PQ9GZW5 306 aaPredicted RBP13.8□□□□□ -0.2
ZNF540-210ENST00000592533 PHKG2P15735 406 aa13.79□□□□□ -0.2
ZNF540-210ENST00000592533 XAGE3Q8WTP9 111 aa13.79□□□□□ -0.2
ZNF540-210ENST00000592533 AIMP1Q12904 312 aaKnown RBP13.79□□□□□ -0.2
ZNF540-210ENST00000592533 PRIMPOLQ96LW4 560 aa13.79□□□□□ -0.2
ZNF540-210ENST00000592533 PTPN12Q05209 780 aaKnown RBP13.79□□□□□ -0.2
ZNF540-210ENST00000592533 TNNI3KQ59H18 835 aa13.79□□□□□ -0.2
ZNF540-210ENST00000592533 KRT28Q7Z3Y7 464 aa13.79□□□□□ -0.2
ZNF540-210ENST00000592533 DBNLQ9UJU6 430 aaKnown RBP13.79□□□□□ -0.2
ZNF540-210ENST00000592533 TAF6LQ9Y6J9 622 aa13.79□□□□□ -0.2
ZNF540-210ENST00000592533 FPGT-TNNI3KV9GXZ4 949 aa13.79□□□□□ -0.2
ZNF540-210ENST00000592533 PAPPAQ13219 1627 aa13.78□□□□□ -0.2
ZNF540-210ENST00000592533 ZNF609O15014 1411 aa13.78□□□□□ -0.2
ZNF540-210ENST00000592533 NOLC1Q14978 699 aaKnown RBP eCLIP13.78□□□□□ -0.2
ZNF540-210ENST00000592533 GTF2F1P35269 517 aaKnown RBP eCLIP13.78□□□□□ -0.2
ZNF540-210ENST00000592533 COPS6Q7L5N1 327 aa13.78□□□□□ -0.2
ZNF540-210ENST00000592533 MYRIPQ8NFW9 859 aa13.78□□□□□ -0.2
ZNF540-210ENST00000592533 GTF3C6Q969F1 213 aa13.78□□□□□ -0.2
ZNF540-210ENST00000592533 SIL1Q9H173 461 aa13.78□□□□□ -0.2
ZNF540-210ENST00000592533 AP5Z1O43299 807 aa13.77□□□□□ -0.2
ZNF540-210ENST00000592533 MAP3K11Q16584 847 aa13.77□□□□□ -0.2
ZNF540-210ENST00000592533 FAM200AQ8TCP9 573 aa13.77□□□□□ -0.2
ZNF540-210ENST00000592533 RAPGEF4Q8WZA2 1011 aa13.77□□□□□ -0.2
ZNF540-210ENST00000592533 MYD88Q99836 296 aa13.77□□□□□ -0.2
ZNF540-210ENST00000592533 DDX60Q8IY21 1712 aaKnown RBP13.77□□□□□ -0.2
ZNF540-210ENST00000592533 PALLDQ8WX93 1383 aa13.77□□□□□ -0.2
ZNF540-210ENST00000592533 SNRPA1P09661 255 aaKnown RBP13.77□□□□□ -0.21
ZNF540-210ENST00000592533 CASP7P55210 303 aa13.77□□□□□ -0.21
ZNF540-210ENST00000592533 ANKRD13DQ6ZTN6 518 aa13.77□□□□□ -0.21
ZNF540-210ENST00000592533 KLHDC4Q8TBB5 520 aa13.77□□□□□ -0.21
ZNF540-210ENST00000592533 HAUS7Q99871 368 aa13.77□□□□□ -0.21
ZNF540-210ENST00000592533 NUP62CLQ9H1M0 184 aa13.77□□□□□ -0.21
ZNF540-210ENST00000592533 U3KPZ7 1027 aaPredicted RBP13.77□□□□□ -0.21
ZNF540-210ENST00000592533 SH3TC1Q8TE82 1336 aa13.77□□□□□ -0.21
ZNF540-210ENST00000592533 HMGN5P82970 282 aaKnown RBP13.77□□□□□ -0.21
ZNF540-210ENST00000592533 SLC39A6Q13433 755 aa13.77□□□□□ -0.21
ZNF540-210ENST00000592533 DDX54Q8TDD1 881 aaKnown RBP13.77□□□□□ -0.21
ZNF540-210ENST00000592533 ZNF496Q96IT1 587 aaPredicted RBP13.77□□□□□ -0.21
ZNF540-210ENST00000592533 DDX19AQ9NUU7 478 aaKnown RBP13.77□□□□□ -0.21
ZNF540-210ENST00000592533 MRVI1Q9Y6F6 885 aa13.76□□□□□ -0.21
ZNF540-210ENST00000592533 TATP17735 454 aaPredicted RBP13.76□□□□□ -0.21
ZNF540-210ENST00000592533 IFNL2Q8IZJ0 200 aa13.76□□□□□ -0.21
ZNF540-210ENST00000592533 LIG1P18858 919 aa13.75□□□□□ -0.21
ZNF540-210ENST00000592533 NFATC2IPQ8NCF5 419 aa13.75□□□□□ -0.21
ZNF540-210ENST00000592533 LEO1Q8WVC0 666 aaPredicted RBP13.75□□□□□ -0.21
ZNF540-210ENST00000592533 DCAF5Q96JK2 942 aa13.75□□□□□ -0.21
ZNF540-210ENST00000592533 TTC12Q9H892 705 aaPredicted RBP13.75□□□□□ -0.21
ZNF540-210ENST00000592533 MYL6BP14649 208 aa13.75□□□□□ -0.21
ZNF540-210ENST00000592533 TYRO3Q06418 890 aa13.75□□□□□ -0.21
ZNF540-210ENST00000592533 TFCP2Q12800 502 aa13.75□□□□□ -0.21
ZNF540-210ENST00000592533 KIAA1524Q8TCG1 905 aa13.75□□□□□ -0.21
ZNF540-210ENST00000592533 NEK1Q96PY6 1258 aa13.75□□□□□ -0.21
ZNF540-210ENST00000592533 LLPHQ9BRT6 129 aaKnown RBP13.75□□□□□ -0.21
ZNF540-210ENST00000592533 CLSTN2Q9H4D0 955 aa13.75□□□□□ -0.21
ZNF540-210ENST00000592533 DCCP43146 1447 aa13.75□□□□□ -0.21
ZNF540-210ENST00000592533 RESTQ13127 1097 aa13.75□□□□□ -0.21
ZNF540-210ENST00000592533 MCMDC2Q4G0Z9 681 aa13.74□□□□□ -0.21
ZNF540-210ENST00000592533 SMARCC2Q8TAQ2 1214 aa13.74□□□□□ -0.21
ZNF540-210ENST00000592533 SPATA32Q96LK8 384 aa13.74□□□□□ -0.21
ZNF540-210ENST00000592533 ZNF830Q96NB3 372 aaPredicted RBP13.74□□□□□ -0.21
ZNF540-210ENST00000592533 KCNF1Q9H3M0 494 aa13.74□□□□□ -0.21
ZNF540-210ENST00000592533 GPR108Q9NPR9 543 aa13.74□□□□□ -0.21
ZNF540-210ENST00000592533 GOLGA6L6A8MZA4 724 aa13.74□□□□□ -0.21
ZNF540-210ENST00000592533 FMNL2Q96PY5 1086 aa13.74□□□□□ -0.21
ZNF540-210ENST00000592533 ZSCAN16Q9H4T2 348 aaPredicted RBP13.74□□□□□ -0.21
ZNF540-210ENST00000592533 HMGB1P09429 215 aaKnown RBP13.73□□□□□ -0.21
ZNF540-210ENST00000592533 FERMT3Q86UX7 667 aa13.73□□□□□ -0.21
ZNF540-210ENST00000592533 EDC3Q96F86 508 aaKnown RBP13.73□□□□□ -0.21
ZNF540-210ENST00000592533 TCEANC2Q96MN5 208 aa13.73□□□□□ -0.21
ZNF540-210ENST00000592533 CAVIN2O95810 425 aa13.73□□□□□ -0.21
ZNF540-210ENST00000592533 PLBD2Q8NHP8 589 aa13.73□□□□□ -0.21
ZNF540-210ENST00000592533 AGXT2Q9BYV1 514 aa13.73□□□□□ -0.21
ZNF540-210ENST00000592533 USP16Q9Y5T5 823 aa13.73□□□□□ -0.21
ZNF540-210ENST00000592533 CYP21A2P08686 494 aa13.73□□□□□ -0.21
ZNF540-210ENST00000592533 KBTBD3Q8NAB2 608 aa13.73□□□□□ -0.21
ZNF540-210ENST00000592533 TNMDQ9H2S6 317 aa13.73□□□□□ -0.21
ZNF540-210ENST00000592533 DACT1Q9NYF0 836 aa13.73□□□□□ -0.21
ZNF540-210ENST00000592533 PFKFB2O60825 505 aa13.72□□□□□ -0.21
ZNF540-210ENST00000592533 DTNBO60941 627 aa13.72□□□□□ -0.21
ZNF540-210ENST00000592533 RBM10P98175 930 aaKnown RBP13.72□□□□□ -0.21
ZNF540-210ENST00000592533 FAM173BQ6P4H8 233 aa13.72□□□□□ -0.21
ZNF540-210ENST00000592533 UBE3BQ7Z3V4 1068 aa13.72□□□□□ -0.21
ZNF540-210ENST00000592533 TDRD7Q8NHU6 1098 aaKnown RBP13.72□□□□□ -0.21
ZNF540-210ENST00000592533 C19orf44Q9H6X5 657 aa13.72□□□□□ -0.21
ZNF540-210ENST00000592533 MYH7P12883 1935 aa13.72□□□□□ -0.21
ZNF540-210ENST00000592533 LMOD2Q6P5Q4 547 aa13.72□□□□□ -0.21
ZNF540-210ENST00000592533 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.72□□□□□ -0.21
ZNF540-210ENST00000592533 TTC5Q8N0Z6 440 aa13.72□□□□□ -0.21
ZNF540-210ENST00000592533 DBNDD2Q9BQY9 259 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms