RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 CSF1RP07333 972 aa17.04■□□□□ 0.32
VMP1-210ENST00000589823 SRGNP10124 158 aa17.04■□□□□ 0.32
VMP1-210ENST00000589823 NPR1P16066 1061 aa17.04■□□□□ 0.32
VMP1-210ENST00000589823 EPHA10Q5JZY3 1008 aa17.04■□□□□ 0.32
VMP1-210ENST00000589823 DDX46Q7L014 1031 aaKnown RBP17.04■□□□□ 0.32
VMP1-210ENST00000589823 MASTLQ96GX5 879 aa17.04■□□□□ 0.32
VMP1-210ENST00000589823 RBM17Q96I25 401 aaKnown RBP17.04■□□□□ 0.32
VMP1-210ENST00000589823 CCDC85AQ96PX6 553 aaPredicted RBP17.04■□□□□ 0.32
VMP1-210ENST00000589823 FHDC1Q9C0D6 1143 aaPredicted RBP17.04■□□□□ 0.32
VMP1-210ENST00000589823 ZBTB40Q9NUA8 1239 aa17.04■□□□□ 0.32
VMP1-210ENST00000589823 KIF13BQ9NQT8 1826 aa17.04■□□□□ 0.32
VMP1-210ENST00000589823 A0A0G2JLW4 131 aa17.03■□□□□ 0.32
VMP1-210ENST00000589823 CHRNA5P30532 468 aa17.03■□□□□ 0.32
VMP1-210ENST00000589823 AAMPQ13685 434 aa17.03■□□□□ 0.32
VMP1-210ENST00000589823 RABL6Q3YEC7 729 aaPredicted RBP17.03■□□□□ 0.32
VMP1-210ENST00000589823 ZNF622Q969S3 477 aaKnown RBP eCLIP17.03■□□□□ 0.322e-7■■□□□ 12.7
VMP1-210ENST00000589823 C1orf115Q9H7X2 142 aa17.03■□□□□ 0.32
VMP1-210ENST00000589823 DPEP1P16444 411 aa17.02■□□□□ 0.32
VMP1-210ENST00000589823 CCDC57Q2TAC2 916 aa17.02■□□□□ 0.32
VMP1-210ENST00000589823 STYK1Q6J9G0 422 aa17.02■□□□□ 0.32
VMP1-210ENST00000589823 ANKRD44Q8N8A2 993 aa17.02■□□□□ 0.32
VMP1-210ENST00000589823 EXOC6Q8TAG9 804 aa17.02■□□□□ 0.32
VMP1-210ENST00000589823 GREM2Q9H772 168 aa17.02■□□□□ 0.32
VMP1-210ENST00000589823 MYH3P11055 1940 aa17.02■□□□□ 0.31
VMP1-210ENST00000589823 ALDH1B1P30837 517 aa17.01■□□□□ 0.31
VMP1-210ENST00000589823 HOXA10P31260 410 aaPredicted RBP17.01■□□□□ 0.31
VMP1-210ENST00000589823 IFIT5Q13325 482 aaKnown RBP17.01■□□□□ 0.31
VMP1-210ENST00000589823 FAM161AQ3B820 660 aa17.01■□□□□ 0.31
VMP1-210ENST00000589823 CNKSR1Q969H4 720 aa17.01■□□□□ 0.31
VMP1-210ENST00000589823 SYT17Q9BSW7 474 aa17.01■□□□□ 0.31
VMP1-210ENST00000589823 RTL9Q8NET4 1388 aa17.01■□□□□ 0.31
VMP1-210ENST00000589823 ANKRD18BA2A2Z9 1011 aa17■□□□□ 0.31
VMP1-210ENST00000589823 ITGA6P23229 1130 aa17■□□□□ 0.31
VMP1-210ENST00000589823 TAF7LQ5H9L4 462 aa17■□□□□ 0.31
VMP1-210ENST00000589823 NLGN2Q8NFZ4 835 aa17■□□□□ 0.31
VMP1-210ENST00000589823 CRAMP1Q96RY5 1269 aa17■□□□□ 0.31
VMP1-210ENST00000589823 CDC5LQ99459 802 aaKnown RBP17■□□□□ 0.31
VMP1-210ENST00000589823 COL11A2P13942 1736 aaPredicted RBP16.99■□□□□ 0.31
VMP1-210ENST00000589823 SRGAP3O43295 1099 aa16.99■□□□□ 0.31
VMP1-210ENST00000589823 ATP8B2P98198 1209 aa16.99■□□□□ 0.31
VMP1-210ENST00000589823 MTX1Q13505 466 aa16.99■□□□□ 0.31
VMP1-210ENST00000589823 GRAPQ13588 217 aa16.99■□□□□ 0.31
VMP1-210ENST00000589823 RPAP2Q8IXW5 612 aaPredicted RBP16.99■□□□□ 0.31
VMP1-210ENST00000589823 GRAPLQ8TC17 118 aaPredicted RBP16.99■□□□□ 0.31
VMP1-210ENST00000589823 SEC31BQ9NQW1 1179 aa16.99■□□□□ 0.31
VMP1-210ENST00000589823 PIM2Q9P1W9 311 aa16.99■□□□□ 0.31
VMP1-210ENST00000589823 KCNA3P22001 575 aa16.98■□□□□ 0.31
VMP1-210ENST00000589823 IGHMBP2P38935 993 aaKnown RBP16.98■□□□□ 0.31
VMP1-210ENST00000589823 CEP85Q6P2H3 762 aa16.98■□□□□ 0.31
VMP1-210ENST00000589823 ANKRD18AQ8IVF6 992 aa16.98■□□□□ 0.31
VMP1-210ENST00000589823 TTLL6Q8N841 843 aa16.98■□□□□ 0.31
VMP1-210ENST00000589823 KIAA1551Q9HCM1 1747 aa16.97■□□□□ 0.31
VMP1-210ENST00000589823 BBOX1O75936 387 aa16.97■□□□□ 0.31
VMP1-210ENST00000589823 RPS8P62241 208 aaKnown RBP16.97■□□□□ 0.31
VMP1-210ENST00000589823 PNMA6EA0A0J9YXQ4 647 aa16.96■□□□□ 0.31
VMP1-210ENST00000589823 HMMRO75330 724 aa16.96■□□□□ 0.31
VMP1-210ENST00000589823 DALRD3Q5D0E6 543 aaKnown RBP16.96■□□□□ 0.31
VMP1-210ENST00000589823 CELF1Q92879 486 aaKnown RBP16.96■□□□□ 0.31
VMP1-210ENST00000589823 MPHOSPH8Q99549 860 aa16.96■□□□□ 0.31
VMP1-210ENST00000589823 TMX4Q9H1E5 349 aaPredicted RBP16.96■□□□□ 0.31
VMP1-210ENST00000589823 DLEC1Q9Y238 1755 aa16.96■□□□□ 0.31
VMP1-210ENST00000589823 PPEF1O14829 653 aaPredicted RBP16.95■□□□□ 0.3
VMP1-210ENST00000589823 PRPF40BQ6NWY9 871 aaKnown RBP16.95■□□□□ 0.3
VMP1-210ENST00000589823 TMC4Q7Z404 712 aa16.95■□□□□ 0.3
VMP1-210ENST00000589823 WWC3Q9ULE0 1092 aa16.95■□□□□ 0.3
VMP1-210ENST00000589823 POLA2Q14181 598 aa16.94■□□□□ 0.3
VMP1-210ENST00000589823 LDHAL6AQ6ZMR3 332 aa16.94■□□□□ 0.3
VMP1-210ENST00000589823 SSH3Q8TE77 659 aa16.94■□□□□ 0.3
VMP1-210ENST00000589823 ZNF594Q96JF6 807 aaPredicted RBP16.94■□□□□ 0.3
VMP1-210ENST00000589823 BCS1LQ9Y276 419 aa16.94■□□□□ 0.3
VMP1-210ENST00000589823 RFX5P48382 616 aaPredicted RBP16.93■□□□□ 0.3
VMP1-210ENST00000589823 PTPN12Q05209 780 aaKnown RBP16.93■□□□□ 0.3
VMP1-210ENST00000589823 CNNM1Q9NRU3 951 aa16.93■□□□□ 0.3
VMP1-210ENST00000589823 BSDC1Q9NW68 430 aaPredicted RBP16.93■□□□□ 0.3
VMP1-210ENST00000589823 ZNF219Q9P2Y4 722 aaPredicted RBP16.93■□□□□ 0.3
VMP1-210ENST00000589823 PCDHB15Q9Y5E8 787 aa16.93■□□□□ 0.3
VMP1-210ENST00000589823 SIRT2Q8IXJ6 389 aa16.92■□□□□ 0.3
VMP1-210ENST00000589823 KLHDC4Q8TBB5 520 aa16.92■□□□□ 0.3
VMP1-210ENST00000589823 COPRSQ9NQ92 184 aa16.92■□□□□ 0.3
VMP1-210ENST00000589823 PA2G4Q9UQ80 394 aaKnown RBP16.92■□□□□ 0.3
VMP1-210ENST00000589823 SOGA3Q5TF21 947 aa16.91■□□□□ 0.3
VMP1-210ENST00000589823 SP8Q8IXZ3 490 aa16.91■□□□□ 0.3
VMP1-210ENST00000589823 PELP1Q8IZL8 1130 aaKnown RBP16.91■□□□□ 0.3
VMP1-210ENST00000589823 SIL1Q9H173 461 aa16.91■□□□□ 0.3
VMP1-210ENST00000589823 FBXO3Q9UK99 471 aa16.91■□□□□ 0.3
VMP1-210ENST00000589823 ATP6V0A2Q9Y487 856 aa16.91■□□□□ 0.3
VMP1-210ENST00000589823 SRCAPQ6ZRS2 3230 aa16.91■□□□□ 0.3
VMP1-210ENST00000589823 EYA2O00167 538 aa16.9■□□□□ 0.3
VMP1-210ENST00000589823 C21orf2O43822 256 aa16.9■□□□□ 0.3
VMP1-210ENST00000589823 G3BP1Q13283 466 aaKnown RBP eCLIP16.9■□□□□ 0.3
VMP1-210ENST00000589823 CC2D2BQ6DHV5 1058 aa16.9■□□□□ 0.3
VMP1-210ENST00000589823 TAF1P21675 1872 aa16.9■□□□□ 0.3
VMP1-210ENST00000589823 CACNA1SQ13698 1873 aa16.9■□□□□ 0.3
VMP1-210ENST00000589823 SLX4Q8IY92 1834 aa16.89■□□□□ 0.29
VMP1-210ENST00000589823 BRCA1P38398 1863 aaKnown RBP16.89■□□□□ 0.29
VMP1-210ENST00000589823 COL4A1P02462 1669 aa16.89■□□□□ 0.29
VMP1-210ENST00000589823 SURF6O75683 361 aaKnown RBP16.89■□□□□ 0.29
VMP1-210ENST00000589823 CIAO1O76071 339 aa16.89■□□□□ 0.29
VMP1-210ENST00000589823 OS9Q13438 667 aaPredicted RBP16.89■□□□□ 0.29
VMP1-210ENST00000589823 LRRC24Q50LG9 513 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms