RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 CHRNA5P30532 468 aa13.68□□□□□ -0.22
TOP3A-216ENST00000583804 CCDC152Q4G0S7 254 aa13.68□□□□□ -0.22
TOP3A-216ENST00000583804 TTLL11Q8NHH1 800 aa13.68□□□□□ -0.22
TOP3A-216ENST00000583804 RPGRQ92834 1020 aaKnown RBP13.68□□□□□ -0.22
TOP3A-216ENST00000583804 CD2APQ9Y5K6 639 aa13.68□□□□□ -0.22
TOP3A-216ENST00000583804 C10orf71Q711Q0 1435 aa13.68□□□□□ -0.22
TOP3A-216ENST00000583804 A0A0G2JLW4 131 aa13.67□□□□□ -0.22
TOP3A-216ENST00000583804 SF3B3Q15393 1217 aaKnown RBP13.67□□□□□ -0.22
TOP3A-216ENST00000583804 DDX46Q7L014 1031 aaKnown RBP13.67□□□□□ -0.22
TOP3A-216ENST00000583804 ZNF622Q969S3 477 aaKnown RBP eCLIP13.67□□□□□ -0.22
TOP3A-216ENST00000583804 GREM2Q9H772 168 aa13.67□□□□□ -0.22
TOP3A-216ENST00000583804 KLRG2A4D1S0 409 aaPredicted RBP13.67□□□□□ -0.22
TOP3A-216ENST00000583804 CSF1RP07333 972 aa13.67□□□□□ -0.22
TOP3A-216ENST00000583804 TGFB2P61812 414 aa13.67□□□□□ -0.22
TOP3A-216ENST00000583804 FAM161AQ3B820 660 aa13.67□□□□□ -0.22
TOP3A-216ENST00000583804 ANKRD44Q8N8A2 993 aa13.67□□□□□ -0.22
TOP3A-216ENST00000583804 RBM17Q96I25 401 aaKnown RBP13.67□□□□□ -0.22
TOP3A-216ENST00000583804 FHDC1Q9C0D6 1143 aaPredicted RBP13.67□□□□□ -0.22
TOP3A-216ENST00000583804 PDZRN3Q9UPQ7 1066 aa13.67□□□□□ -0.22
TOP3A-216ENST00000583804 RIC1Q4ADV7 1423 aa13.66□□□□□ -0.22
TOP3A-216ENST00000583804 SRGNP10124 158 aa13.66□□□□□ -0.22
TOP3A-216ENST00000583804 NPR1P16066 1061 aa13.66□□□□□ -0.22
TOP3A-216ENST00000583804 DPEP1P16444 411 aa13.66□□□□□ -0.22
TOP3A-216ENST00000583804 CCDC57Q2TAC2 916 aa13.66□□□□□ -0.22
TOP3A-216ENST00000583804 RABL6Q3YEC7 729 aaPredicted RBP13.66□□□□□ -0.22
TOP3A-216ENST00000583804 CRY2Q49AN0 593 aa13.66□□□□□ -0.22
TOP3A-216ENST00000583804 MASTLQ96GX5 879 aa13.66□□□□□ -0.22
TOP3A-216ENST00000583804 DDX60Q8IY21 1712 aaKnown RBP13.65□□□□□ -0.22
TOP3A-216ENST00000583804 TNRC6CQ9HCJ0 1690 aaKnown RBP13.65□□□□□ -0.22
TOP3A-216ENST00000583804 ANKRD18BA2A2Z9 1011 aa13.65□□□□□ -0.22
TOP3A-216ENST00000583804 SRGAP3O43295 1099 aa13.65□□□□□ -0.22
TOP3A-216ENST00000583804 ITGA6P23229 1130 aa13.65□□□□□ -0.22
TOP3A-216ENST00000583804 IFIT5Q13325 482 aaKnown RBP13.65□□□□□ -0.22
TOP3A-216ENST00000583804 TAF7LQ5H9L4 462 aa13.65□□□□□ -0.22
TOP3A-216ENST00000583804 BCL11AQ9H165 835 aa13.65□□□□□ -0.22
TOP3A-216ENST00000583804 SEC31BQ9NQW1 1179 aa13.65□□□□□ -0.22
TOP3A-216ENST00000583804 WWC3Q9ULE0 1092 aa13.65□□□□□ -0.22
TOP3A-216ENST00000583804 IGHDP01880 384 aa13.64□□□□□ -0.23
TOP3A-216ENST00000583804 HOXA10P31260 410 aaPredicted RBP13.64□□□□□ -0.23
TOP3A-216ENST00000583804 ATP8B2P98198 1209 aa13.64□□□□□ -0.23
TOP3A-216ENST00000583804 AAMPQ13685 434 aa13.64□□□□□ -0.23
TOP3A-216ENST00000583804 STYK1Q6J9G0 422 aa13.64□□□□□ -0.23
TOP3A-216ENST00000583804 CEP85Q6P2H3 762 aa13.64□□□□□ -0.23
TOP3A-216ENST00000583804 RPAP2Q8IXW5 612 aaPredicted RBP13.64□□□□□ -0.23
TOP3A-216ENST00000583804 NLGN2Q8NFZ4 835 aa13.64□□□□□ -0.23
TOP3A-216ENST00000583804 SYT17Q9BSW7 474 aa13.64□□□□□ -0.23
TOP3A-216ENST00000583804 ANKRD31Q8N7Z5 1873 aa13.64□□□□□ -0.23
TOP3A-216ENST00000583804 PNMA6EA0A0J9YXQ4 647 aa13.63□□□□□ -0.23
TOP3A-216ENST00000583804 ALDH1B1P30837 517 aa13.63□□□□□ -0.23
TOP3A-216ENST00000583804 SKAP1Q86WV1 359 aa13.63□□□□□ -0.23
TOP3A-216ENST00000583804 CNKSR1Q969H4 720 aa13.63□□□□□ -0.23
TOP3A-216ENST00000583804 ZNF594Q96JF6 807 aaPredicted RBP13.63□□□□□ -0.23
TOP3A-216ENST00000583804 CRAMP1Q96RY5 1269 aa13.63□□□□□ -0.23
TOP3A-216ENST00000583804 RTL9Q8NET4 1388 aa13.63□□□□□ -0.23
TOP3A-216ENST00000583804 KCNA3P22001 575 aa13.62□□□□□ -0.23
TOP3A-216ENST00000583804 RPS8P62241 208 aaKnown RBP13.62□□□□□ -0.23
TOP3A-216ENST00000583804 MTX1Q13505 466 aa13.62□□□□□ -0.23
TOP3A-216ENST00000583804 GRAPQ13588 217 aa13.62□□□□□ -0.23
TOP3A-216ENST00000583804 PPP4R3CPQ6ZMV5 832 aa13.62□□□□□ -0.23
TOP3A-216ENST00000583804 ANKRD18AQ8IVF6 992 aa13.62□□□□□ -0.23
TOP3A-216ENST00000583804 GRAPLQ8TC17 118 aaPredicted RBP13.62□□□□□ -0.23
TOP3A-216ENST00000583804 CELF1Q92879 486 aaKnown RBP13.62□□□□□ -0.23
TOP3A-216ENST00000583804 CDC5LQ99459 802 aaKnown RBP13.62□□□□□ -0.23
TOP3A-216ENST00000583804 PIM2Q9P1W9 311 aa13.62□□□□□ -0.23
TOP3A-216ENST00000583804 LAMB2P55268 1798 aa13.62□□□□□ -0.23
TOP3A-216ENST00000583804 HMMRO75330 724 aa13.61□□□□□ -0.23
TOP3A-216ENST00000583804 IGHMBP2P38935 993 aaKnown RBP13.61□□□□□ -0.23
TOP3A-216ENST00000583804 TTLL6Q8N841 843 aa13.61□□□□□ -0.23
TOP3A-216ENST00000583804 KLHDC4Q8TBB5 520 aa13.61□□□□□ -0.23
TOP3A-216ENST00000583804 MPHOSPH8Q99549 860 aa13.61□□□□□ -0.23
TOP3A-216ENST00000583804 BBOX1O75936 387 aa13.61□□□□□ -0.23
TOP3A-216ENST00000583804 SIRT2Q8IXJ6 389 aa13.61□□□□□ -0.23
TOP3A-216ENST00000583804 TSHZ2Q9NRE2 1034 aa13.61□□□□□ -0.23
TOP3A-216ENST00000583804 ZNF219Q9P2Y4 722 aaPredicted RBP13.61□□□□□ -0.23
TOP3A-216ENST00000583804 PA2G4Q9UQ80 394 aaKnown RBP13.61□□□□□ -0.23
TOP3A-216ENST00000583804 MYH3P11055 1940 aa13.6□□□□□ -0.23
TOP3A-216ENST00000583804 KIF13BQ9NQT8 1826 aa13.6□□□□□ -0.23
TOP3A-216ENST00000583804 PPEF1O14829 653 aaPredicted RBP13.6□□□□□ -0.23
TOP3A-216ENST00000583804 RFX5P48382 616 aaPredicted RBP13.6□□□□□ -0.23
TOP3A-216ENST00000583804 POLA2Q14181 598 aa13.6□□□□□ -0.23
TOP3A-216ENST00000583804 DALRD3Q5D0E6 543 aaKnown RBP13.6□□□□□ -0.23
TOP3A-216ENST00000583804 PRPF40BQ6NWY9 871 aaKnown RBP13.6□□□□□ -0.23
TOP3A-216ENST00000583804 LDHAL6AQ6ZMR3 332 aa13.6□□□□□ -0.23
TOP3A-216ENST00000583804 SSH3Q8TE77 659 aa13.6□□□□□ -0.23
TOP3A-216ENST00000583804 SIL1Q9H173 461 aa13.6□□□□□ -0.23
TOP3A-216ENST00000583804 CNNM1Q9NRU3 951 aa13.6□□□□□ -0.23
TOP3A-216ENST00000583804 COL11A2P13942 1736 aaPredicted RBP13.59□□□□□ -0.23
TOP3A-216ENST00000583804 APBB1O00213 710 aa13.59□□□□□ -0.23
TOP3A-216ENST00000583804 SURF6O75683 361 aaKnown RBP13.59□□□□□ -0.23
TOP3A-216ENST00000583804 PTPN12Q05209 780 aaKnown RBP13.59□□□□□ -0.23
TOP3A-216ENST00000583804 TMX4Q9H1E5 349 aaPredicted RBP13.59□□□□□ -0.23
TOP3A-216ENST00000583804 BCS1LQ9Y276 419 aa13.59□□□□□ -0.23
TOP3A-216ENST00000583804 G3BP1Q13283 466 aaKnown RBP eCLIP13.58□□□□□ -0.24
TOP3A-216ENST00000583804 OS9Q13438 667 aaPredicted RBP13.58□□□□□ -0.24
TOP3A-216ENST00000583804 PUS3Q9BZE2 481 aaKnown RBP13.58□□□□□ -0.24
TOP3A-216ENST00000583804 RWDD1Q9H446 243 aaPredicted RBP13.58□□□□□ -0.24
TOP3A-216ENST00000583804 COPRSQ9NQ92 184 aa13.58□□□□□ -0.24
TOP3A-216ENST00000583804 C21orf2O43822 256 aa13.57□□□□□ -0.24
TOP3A-216ENST00000583804 LRRC24Q50LG9 513 aa13.57□□□□□ -0.24
TOP3A-216ENST00000583804 TMC4Q7Z404 712 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms