RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 TNS2Q63HR2 1409 aa13.96□□□□□ -0.18
SS18-221ENST00000582448 POLD1P28340 1107 aa13.95□□□□□ -0.18
SS18-221ENST00000582448 SYTL4Q96C24 671 aaPredicted RBP13.95□□□□□ -0.18
SS18-221ENST00000582448 UTRNP46939 3433 aa13.95□□□□□ -0.18
SS18-221ENST00000582448 KAT6BQ8WYB5 2073 aa13.95□□□□□ -0.18
SS18-221ENST00000582448 TTC24A2A3L6 582 aaPredicted RBP13.94□□□□□ -0.18
SS18-221ENST00000582448 SNIP1Q8TAD8 396 aaKnown RBP13.94□□□□□ -0.18
SS18-221ENST00000582448 TFCP2L1Q9NZI6 479 aa13.94□□□□□ -0.18
SS18-221ENST00000582448 WNK3Q9BYP7 1800 aa13.93□□□□□ -0.18
SS18-221ENST00000582448 J3QL48 77 aa13.93□□□□□ -0.18
SS18-221ENST00000582448 GIGYF1O75420 1035 aaPredicted RBP13.93□□□□□ -0.18
SS18-221ENST00000582448 HDGFL2Q7Z4V5 671 aaPredicted RBP13.93□□□□□ -0.18
SS18-221ENST00000582448 ZNF511Q8NB15 262 aa13.93□□□□□ -0.18
SS18-221ENST00000582448 SIAH2O43255 324 aa13.92□□□□□ -0.18
SS18-221ENST00000582448 ANP32CO43423 234 aa13.92□□□□□ -0.18
SS18-221ENST00000582448 SMPD1P17405 629 aa13.92□□□□□ -0.18
SS18-221ENST00000582448 SLC12A5Q9H2X9 1139 aa13.92□□□□□ -0.18
SS18-221ENST00000582448 TRPM1Q7Z4N2 1603 aa13.92□□□□□ -0.18
SS18-221ENST00000582448 WASHC2AQ641Q2 1341 aa13.91□□□□□ -0.18
SS18-221ENST00000582448 NFAT5O94916 1531 aa13.91□□□□□ -0.18
SS18-221ENST00000582448 EHBP1Q8NDI1 1231 aa13.91□□□□□ -0.18
SS18-221ENST00000582448 SLC16A10Q8TF71 515 aa13.91□□□□□ -0.18
SS18-221ENST00000582448 GOPCQ9HD26 462 aa13.91□□□□□ -0.18
SS18-221ENST00000582448 SLC27A3Q5K4L6 730 aa13.9□□□□□ -0.18
SS18-221ENST00000582448 NLGN2Q8NFZ4 835 aa13.9□□□□□ -0.18
SS18-221ENST00000582448 LRRN4Q8WUT4 740 aa13.9□□□□□ -0.18
SS18-221ENST00000582448 PNPLA7Q6ZV29 1317 aa13.9□□□□□ -0.19
SS18-221ENST00000582448 USP31Q70CQ4 1352 aa13.89□□□□□ -0.19
SS18-221ENST00000582448 MAP3K5Q99683 1374 aa13.88□□□□□ -0.19
SS18-221ENST00000582448 ST20-MTHFSA0A0A6YYL1 179 aa13.88□□□□□ -0.19
SS18-221ENST00000582448 ST8SIA5O15466 376 aa13.88□□□□□ -0.19
SS18-221ENST00000582448 IP6K1Q92551 441 aa13.88□□□□□ -0.19
SS18-221ENST00000582448 FOXJ1Q92949 421 aa13.88□□□□□ -0.19
SS18-221ENST00000582448 PCMTD1Q96MG8 357 aaPredicted RBP13.88□□□□□ -0.19
SS18-221ENST00000582448 NHSQ6T4R5 1651 aa13.88□□□□□ -0.19
SS18-221ENST00000582448 KIF7Q2M1P5 1343 aa13.88□□□□□ -0.19
SS18-221ENST00000582448 ABCC6O95255 1503 aa13.87□□□□□ -0.19
SS18-221ENST00000582448 AVPP01185 164 aa13.87□□□□□ -0.19
SS18-221ENST00000582448 FBLN1P23142 703 aa13.87□□□□□ -0.19
SS18-221ENST00000582448 CHD4Q14839 1912 aa13.87□□□□□ -0.19
SS18-221ENST00000582448 SBNO2Q9Y2G9 1366 aa13.86□□□□□ -0.19
SS18-221ENST00000582448 BTAF1O14981 1849 aa13.86□□□□□ -0.19
SS18-221ENST00000582448 AP1G2O75843 785 aa13.86□□□□□ -0.19
SS18-221ENST00000582448 RFC5P40937 340 aa13.86□□□□□ -0.19
SS18-221ENST00000582448 AMPHP49418 695 aa13.86□□□□□ -0.19
SS18-221ENST00000582448 MSL1Q68DK7 614 aa13.86□□□□□ -0.19
SS18-221ENST00000582448 POLR3GLQ9BT43 218 aa13.86□□□□□ -0.19
SS18-221ENST00000582448 AAASQ9NRG9 546 aa13.86□□□□□ -0.19
SS18-221ENST00000582448 TERF2IPQ9NYB0 399 aa13.86□□□□□ -0.19
SS18-221ENST00000582448 CCNL1Q9UK58 526 aaPredicted RBP13.86□□□□□ -0.19
SS18-221ENST00000582448 ZCRB1Q8TBF4 217 aaKnown RBP13.85□□□□□ -0.19
SS18-221ENST00000582448 GRIN3BO60391 1043 aa13.84□□□□□ -0.19
SS18-221ENST00000582448 ALDH1A1P00352 501 aa13.84□□□□□ -0.19
SS18-221ENST00000582448 YBX3P16989 372 aaKnown RBP eCLIP13.84□□□□□ -0.19
SS18-221ENST00000582448 TMF1P82094 1093 aa13.84□□□□□ -0.19
SS18-221ENST00000582448 CDCA8Q53HL2 280 aa13.84□□□□□ -0.19
SS18-221ENST00000582448 C4orf48Q5BLP8 95 aa13.84□□□□□ -0.19
SS18-221ENST00000582448 PAPPAQ13219 1627 aa13.83□□□□□ -0.2
SS18-221ENST00000582448 CENPBP07199 599 aaPredicted RBP13.83□□□□□ -0.2
SS18-221ENST00000582448 COL23A1Q86Y22 540 aaPredicted RBP13.83□□□□□ -0.2
SS18-221ENST00000582448 HPS1Q92902 700 aa13.83□□□□□ -0.2
SS18-221ENST00000582448 COG3Q96JB2 828 aa13.83□□□□□ -0.2
SS18-221ENST00000582448 TLL2Q9Y6L7 1015 aa13.83□□□□□ -0.2
SS18-221ENST00000582448 CD163L1Q9NR16 1453 aa13.82□□□□□ -0.2
SS18-221ENST00000582448 VARSP26640 1264 aaKnown RBP13.82□□□□□ -0.2
SS18-221ENST00000582448 HOXC9P31274 260 aa13.82□□□□□ -0.2
SS18-221ENST00000582448 USHBP1Q8N6Y0 703 aa13.82□□□□□ -0.2
SS18-221ENST00000582448 DACH1Q9UI36 760 aa13.82□□□□□ -0.2
SS18-221ENST00000582448 ANKRD36BQ8N2N9 1353 aa13.82□□□□□ -0.2
SS18-221ENST00000582448 EDC4Q6P2E9 1401 aaKnown RBP13.81□□□□□ -0.2
SS18-221ENST00000582448 ZNF526Q8TF50 670 aaPredicted RBP13.81□□□□□ -0.2
SS18-221ENST00000582448 MAP3K19Q56UN5 1328 aa13.81□□□□□ -0.2
SS18-221ENST00000582448 A0A1W2PP64 1363 aa13.81□□□□□ -0.2
SS18-221ENST00000582448 CCER2I3L3R5 266 aa13.8□□□□□ -0.2
SS18-221ENST00000582448 NR6A1Q15406 480 aa13.8□□□□□ -0.2
SS18-221ENST00000582448 CRIPAKQ8N1N5 446 aa13.8□□□□□ -0.2
SS18-221ENST00000582448 HMX1Q9NP08 348 aaPredicted RBP13.8□□□□□ -0.2
SS18-221ENST00000582448 WWC3Q9ULE0 1092 aa13.8□□□□□ -0.2
SS18-221ENST00000582448 MON2Q7Z3U7 1717 aa13.8□□□□□ -0.2
SS18-221ENST00000582448 LTN1O94822 1766 aa13.8□□□□□ -0.2
SS18-221ENST00000582448 USP17L8P0C7I0 530 aa13.79□□□□□ -0.2
SS18-221ENST00000582448 RRS1Q15050 365 aaKnown RBP13.79□□□□□ -0.2
SS18-221ENST00000582448 ARMC2Q8NEN0 867 aa13.79□□□□□ -0.2
SS18-221ENST00000582448 EPS8L1Q8TE68 723 aa13.79□□□□□ -0.2
SS18-221ENST00000582448 NBPF6Q5VWK0 638 aa13.78□□□□□ -0.2
SS18-221ENST00000582448 RAPGEF4Q8WZA2 1011 aa13.78□□□□□ -0.2
SS18-221ENST00000582448 NBPF4Q96M43 638 aa13.78□□□□□ -0.2
SS18-221ENST00000582448 POTECB2RU33 542 aa13.77□□□□□ -0.21
SS18-221ENST00000582448 NSD2O96028 1365 aa13.77□□□□□ -0.21
SS18-221ENST00000582448 TATP17735 454 aaPredicted RBP13.77□□□□□ -0.21
SS18-221ENST00000582448 SMCPP49901 116 aaPredicted RBP13.77□□□□□ -0.21
SS18-221ENST00000582448 MPRIPQ6WCQ1 1025 aa13.77□□□□□ -0.21
SS18-221ENST00000582448 YTHDC1Q96MU7 727 aaKnown RBP13.77□□□□□ -0.21
SS18-221ENST00000582448 AXIN1O15169 862 aa13.76□□□□□ -0.21
SS18-221ENST00000582448 AGERQ15109 404 aa13.76□□□□□ -0.21
SS18-221ENST00000582448 CTC1Q2NKJ3 1217 aa13.76□□□□□ -0.21
SS18-221ENST00000582448 SMIM5Q71RC9 77 aa13.76□□□□□ -0.21
SS18-221ENST00000582448 SH3BP5LQ7L8J4 393 aa13.76□□□□□ -0.21
SS18-221ENST00000582448 SH3RF1Q7Z6J0 888 aa13.76□□□□□ -0.21
SS18-221ENST00000582448 TESK2Q96S53 571 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms