RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-215ENST00000578995 ATAD2Q6PL18 1390 aa5.35□□□□□ -1.55
SMARCE1-215ENST00000578995 PNPLA6Q8IY17 1366 aa5.35□□□□□ -1.55
SMARCE1-215ENST00000578995 EVC2Q86UK5 1308 aa5.35□□□□□ -1.55
SMARCE1-215ENST00000578995 TESPA1A2RU30 521 aaPredicted RBP5.35□□□□□ -1.55
SMARCE1-215ENST00000578995 TOM1O60784 492 aa5.35□□□□□ -1.55
SMARCE1-215ENST00000578995 ATF3P18847 181 aa5.35□□□□□ -1.55
SMARCE1-215ENST00000578995 PRPF38BQ5VTL8 546 aaKnown RBP5.35□□□□□ -1.55
SMARCE1-215ENST00000578995 DDX17Q92841 729 aaKnown RBP5.35□□□□□ -1.55
SMARCE1-215ENST00000578995 NUDT16Q96DE0 195 aaKnown RBP5.35□□□□□ -1.55
SMARCE1-215ENST00000578995 AGBL1Q96MI9 1066 aa5.35□□□□□ -1.55
SMARCE1-215ENST00000578995 FAM208AQ9UK61 1670 aaKnown RBP5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 SBNO1A3KN83 1393 aa5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 CCDC7Q96M83 1385 aa5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 NINLQ9Y2I6 1382 aa5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 KIF7Q2M1P5 1343 aa5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 WASHC2AQ641Q2 1341 aa5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 H7C1W4 665 aa5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 HSPA1LP34931 641 aa5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 CHRNA4P43681 627 aa5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 MAP2K3P46734 347 aa5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 EIF4G2P78344 907 aaKnown RBP eCLIP5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 DHX9Q08211 1270 aaKnown RBP5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 FOXD4L6Q3SYB3 417 aaPredicted RBP5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 FOXD4L3Q6VB84 417 aaPredicted RBP5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 LYSMD3Q7Z3D4 306 aa5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 GPCPD1Q9NPB8 672 aa5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 FAM217BQ9NTX9 383 aaPredicted RBP5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 BRWD3Q6RI45 1802 aa5.34□□□□□ -1.55
SMARCE1-215ENST00000578995 RGPD1P0DJD0 1748 aa5.34□□□□□ -1.56
SMARCE1-215ENST00000578995 SHANK3Q9BYB0 1731 aa5.34□□□□□ -1.56
SMARCE1-215ENST00000578995 ABCC6O95255 1503 aa5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 EDC4Q6P2E9 1401 aaKnown RBP5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 BRD4O60885 1362 aaPredicted RBP5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 ANKRD36BQ8N2N9 1353 aa5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 ACEP12821 1306 aa5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 SPATA31A3Q5VYP0 1347 aa5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 SHISA8B8ZZ34 492 aa5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 CLCN1P35523 988 aa5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 MAP2K5Q13163 448 aa5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 DBN1Q16643 649 aa5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 C14orf37Q86TY3 774 aa5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 SUV39H2Q9H5I1 410 aa5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 ZNF395Q9H8N7 513 aaPredicted RBP5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 NOP53Q9NZM5 478 aaKnown RBP5.33□□□□□ -1.56
SMARCE1-215ENST00000578995 USP31Q70CQ4 1352 aa5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 USP19O94966 1318 aa5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 NPHP3Q7Z494 1330 aa5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 GNB5O14775 395 aa5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 FOXO3O43524 673 aa5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 NDUFV2P19404 249 aa5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 PIP4K2BP78356 416 aa5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 ESCO1Q5FWF5 840 aa5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 NBPF14Q5TI25 921 aa5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 LINC00114Q6XXX2 140 aa5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 GPIHBP1Q8IV16 184 aa5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 PMFBP1Q8TBY8 1022 aa5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 GTPBP3Q969Y2 492 aaKnown RBP5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 CABP1Q9NZU7 370 aa5.32□□□□□ -1.56
SMARCE1-215ENST00000578995 JCADQ9P266 1359 aa5.31□□□□□ -1.56
SMARCE1-215ENST00000578995 GLI3P10071 1580 aa5.31□□□□□ -1.56
SMARCE1-215ENST00000578995 MAGEB6P1A0A0J9YX57 407 aa5.31□□□□□ -1.56
SMARCE1-215ENST00000578995 GATA4P43694 442 aa5.31□□□□□ -1.56
SMARCE1-215ENST00000578995 SRPK2P78362 688 aaKnown RBP5.31□□□□□ -1.56
SMARCE1-215ENST00000578995 TMF1P82094 1093 aa5.31□□□□□ -1.56
SMARCE1-215ENST00000578995 FOXD4L5Q5VV16 416 aaPredicted RBP5.31□□□□□ -1.56
SMARCE1-215ENST00000578995 RIPOR1Q6ZS17 1223 aa5.31□□□□□ -1.56
SMARCE1-215ENST00000578995 CARD14Q9BXL6 1004 aa5.31□□□□□ -1.56
SMARCE1-215ENST00000578995 SLC12A5Q9H2X9 1139 aa5.31□□□□□ -1.56
SMARCE1-215ENST00000578995 GDF2Q9UK05 429 aaPredicted RBP5.31□□□□□ -1.56
SMARCE1-215ENST00000578995 THSD7AQ9UPZ6 1657 aa5.31□□□□□ -1.56
SMARCE1-215ENST00000578995 KTN1Q86UP2 1357 aaKnown RBP5.3□□□□□ -1.56
SMARCE1-215ENST00000578995 SBF2Q86WG5 1849 aa5.3□□□□□ -1.56
SMARCE1-215ENST00000578995 SLIT2O94813 1529 aa5.3□□□□□ -1.56
SMARCE1-215ENST00000578995 IRF6O14896 467 aa5.3□□□□□ -1.56
SMARCE1-215ENST00000578995 YBX3P16989 372 aaKnown RBP eCLIP5.3□□□□□ -1.56
SMARCE1-215ENST00000578995 ZEB1P37275 1124 aaPredicted RBP5.3□□□□□ -1.56
SMARCE1-215ENST00000578995 XPCQ01831 940 aaPredicted RBP5.3□□□□□ -1.56
SMARCE1-215ENST00000578995 KRT28Q7Z3Y7 464 aa5.3□□□□□ -1.56
SMARCE1-215ENST00000578995 SPIRE2Q8WWL2 714 aa5.3□□□□□ -1.56
SMARCE1-215ENST00000578995 EDARADDQ8WWZ3 215 aa5.3□□□□□ -1.56
SMARCE1-215ENST00000578995 PARP4Q9UKK3 1724 aaKnown RBP5.3□□□□□ -1.56
SMARCE1-215ENST00000578995 SMG6Q86US8 1419 aaKnown RBP5.3□□□□□ -1.56
SMARCE1-215ENST00000578995 NSD3Q9BZ95 1437 aa5.3□□□□□ -1.56
SMARCE1-215ENST00000578995 ARHGEF10O15013 1369 aa5.29□□□□□ -1.56
SMARCE1-215ENST00000578995 TTC21BQ7Z4L5 1316 aa5.29□□□□□ -1.56
SMARCE1-215ENST00000578995 PKD1L3Q7Z443 1732 aa5.29□□□□□ -1.56
SMARCE1-215ENST00000578995 MOXD2PA6NHM9 499 aa5.29□□□□□ -1.56
SMARCE1-215ENST00000578995 PER1O15534 1290 aaPredicted RBP5.29□□□□□ -1.56
SMARCE1-215ENST00000578995 SLC24A1O60721 1099 aa5.29□□□□□ -1.56
SMARCE1-215ENST00000578995 SH3BP5LQ7L8J4 393 aa5.29□□□□□ -1.56
SMARCE1-215ENST00000578995 CDV3Q9UKY7 258 aaKnown RBP5.29□□□□□ -1.56
SMARCE1-215ENST00000578995 LRRC37A3O60309 1634 aa5.29□□□□□ -1.56
SMARCE1-215ENST00000578995 SPATA31A6Q5VVP1 1343 aa5.28□□□□□ -1.56
SMARCE1-215ENST00000578995 TTC21AQ8NDW8 1320 aa5.28□□□□□ -1.56
SMARCE1-215ENST00000578995 COL3A1P02461 1466 aaPredicted RBP5.28□□□□□ -1.56
SMARCE1-215ENST00000578995 BCL9LQ86UU0 1499 aa5.28□□□□□ -1.56
SMARCE1-215ENST00000578995 AMPD1P23109 780 aa5.28□□□□□ -1.56
SMARCE1-215ENST00000578995 RSPO4Q2I0M5 234 aaPredicted RBP5.28□□□□□ -1.56
SMARCE1-215ENST00000578995 PRICKLE2Q7Z3G6 844 aa5.28□□□□□ -1.56
SMARCE1-215ENST00000578995 LRRC59Q96AG4 307 aaKnown RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms