RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 TRPM4Q8TD43 1214 aa10.11□□□□□ -0.79
SMCHD1-202ENST00000577300 RTCBQ9Y3I0 505 aaKnown RBP10.11□□□□□ -0.79
SMCHD1-202ENST00000577300 RGS9O75916 674 aaPredicted RBP10.1□□□□□ -0.79
SMCHD1-202ENST00000577300 TARSP26639 723 aaKnown RBP10.1□□□□□ -0.79
SMCHD1-202ENST00000577300 AFF1P51825 1210 aaKnown RBP10.1□□□□□ -0.79
SMCHD1-202ENST00000577300 ILDR2Q71H61 639 aa10.1□□□□□ -0.79
SMCHD1-202ENST00000577300 DHX32Q7L7V1 743 aaKnown RBP10.1□□□□□ -0.79
SMCHD1-202ENST00000577300 KRT25Q7Z3Z0 450 aa10.1□□□□□ -0.79
SMCHD1-202ENST00000577300 FRRS1LQ9P0K9 344 aa10.1□□□□□ -0.79
SMCHD1-202ENST00000577300 A0A0A0MRY4 1105 aa10.09□□□□□ -0.79
SMCHD1-202ENST00000577300 SASH3O75995 380 aa10.09□□□□□ -0.79
SMCHD1-202ENST00000577300 RARAP10276 462 aa10.09□□□□□ -0.79
SMCHD1-202ENST00000577300 GPLD1P80108 840 aa10.09□□□□□ -0.79
SMCHD1-202ENST00000577300 DOC2BQ14184 412 aa10.09□□□□□ -0.79
SMCHD1-202ENST00000577300 FAM35AQ86V20 835 aa10.09□□□□□ -0.79
SMCHD1-202ENST00000577300 CXXC1Q9P0U4 656 aaPredicted RBP10.09□□□□□ -0.79
SMCHD1-202ENST00000577300 ZBTB42B2RXF5 422 aa10.08□□□□□ -0.8
SMCHD1-202ENST00000577300 GRIK4Q16099 956 aa10.08□□□□□ -0.8
SMCHD1-202ENST00000577300 C16orf46Q6P387 395 aa10.08□□□□□ -0.8
SMCHD1-202ENST00000577300 LPIN3Q9BQK8 851 aa10.08□□□□□ -0.8
SMCHD1-202ENST00000577300 ELNP15502 786 aa10.07□□□□□ -0.8
SMCHD1-202ENST00000577300 BRD2P25440 801 aaKnown RBP10.07□□□□□ -0.8
SMCHD1-202ENST00000577300 ARID4AP29374 1257 aaPredicted RBP10.07□□□□□ -0.8
SMCHD1-202ENST00000577300 TMEM164Q5U3C3 297 aa10.07□□□□□ -0.8
SMCHD1-202ENST00000577300 TTC9Q92623 222 aa10.07□□□□□ -0.8
SMCHD1-202ENST00000577300 PBXIP1Q96AQ6 731 aa10.07□□□□□ -0.8
SMCHD1-202ENST00000577300 C9orf172C9J069 976 aa10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 XYLBO75191 536 aa10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 CPB1P15086 417 aa10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 NRLP54845 237 aa10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 RAC1P63000 192 aa10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 ETFBKMTQ8IXQ9 262 aa10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 RGL4Q8IZJ4 473 aa10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 CMTR1Q8N1G2 835 aaKnown RBP10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 CLP1Q92989 425 aaKnown RBP10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 CCDC97Q96F63 343 aaPredicted RBP10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 SAP130Q9H0E3 1048 aa10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 SERPINA10Q9UK55 444 aa10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 USP20Q9Y2K6 914 aa10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 KCNMB2Q9Y691 235 aa10.06□□□□□ -0.8
SMCHD1-202ENST00000577300 PTCD1O75127 700 aaKnown RBP10.05□□□□□ -0.8
SMCHD1-202ENST00000577300 PERM1Q5SV97 790 aa10.05□□□□□ -0.8
SMCHD1-202ENST00000577300 TLR7Q9NYK1 1049 aaKnown RBP10.05□□□□□ -0.8
SMCHD1-202ENST00000577300 SELPP16109 830 aa10.04□□□□□ -0.8
SMCHD1-202ENST00000577300 GRIK5Q16478 980 aa10.04□□□□□ -0.8
SMCHD1-202ENST00000577300 MSL1Q68DK7 614 aa10.04□□□□□ -0.8
SMCHD1-202ENST00000577300 ELMSAN1Q6PJG2 1045 aa10.04□□□□□ -0.8
SMCHD1-202ENST00000577300 TNFRSF10BO14763 440 aa10.03□□□□□ -0.8
SMCHD1-202ENST00000577300 ADGRE1Q14246 886 aa10.03□□□□□ -0.8
SMCHD1-202ENST00000577300 DMRTC2Q8IXT2 367 aaPredicted RBP10.03□□□□□ -0.8
SMCHD1-202ENST00000577300 FMR1NBQ8N0W7 255 aaPredicted RBP10.03□□□□□ -0.8
SMCHD1-202ENST00000577300 DTWD1Q8N5C7 304 aa10.03□□□□□ -0.8
SMCHD1-202ENST00000577300 LENG1Q96BZ8 264 aaPredicted RBP10.03□□□□□ -0.8
SMCHD1-202ENST00000577300 TPSG1Q9NRR2 321 aa10.03□□□□□ -0.8
SMCHD1-202ENST00000577300 HOXD8P13378 290 aaPredicted RBP10.02□□□□□ -0.81
SMCHD1-202ENST00000577300 MLLT1Q03111 559 aaPredicted RBP10.02□□□□□ -0.81
SMCHD1-202ENST00000577300 RSPO4Q2I0M5 234 aaPredicted RBP10.02□□□□□ -0.81
SMCHD1-202ENST00000577300 CAPN12Q6ZSI9 719 aa10.02□□□□□ -0.81
SMCHD1-202ENST00000577300 MKNK1Q9BUB5 465 aa10.02□□□□□ -0.81
SMCHD1-202ENST00000577300 SEMA6BQ9H3T3 888 aa10.02□□□□□ -0.81
SMCHD1-202ENST00000577300 ITGB7P26010 798 aa10.01□□□□□ -0.81
SMCHD1-202ENST00000577300 SOX18P35713 384 aa10.01□□□□□ -0.81
SMCHD1-202ENST00000577300 NRG1Q02297 640 aaPredicted RBP10.01□□□□□ -0.81
SMCHD1-202ENST00000577300 PLAURQ03405 335 aa10.01□□□□□ -0.81
SMCHD1-202ENST00000577300 MBTPS1Q14703 1052 aa10.01□□□□□ -0.81
SMCHD1-202ENST00000577300 FAM26DQ5JW98 314 aa10.01□□□□□ -0.81
SMCHD1-202ENST00000577300 NKAPLQ5M9Q1 402 aa10.01□□□□□ -0.81
SMCHD1-202ENST00000577300 FAM13BQ9NYF5 915 aa10.01□□□□□ -0.81
SMCHD1-202ENST00000577300 MMP20O60882 483 aa10□□□□□ -0.81
SMCHD1-202ENST00000577300 PSAPP07602 524 aa10□□□□□ -0.81
SMCHD1-202ENST00000577300 NAA30Q147X3 362 aaPredicted RBP9.99□□□□□ -0.81
SMCHD1-202ENST00000577300 HFE2Q6ZVN8 426 aa9.99□□□□□ -0.81
SMCHD1-202ENST00000577300 NLRP13Q86W25 1043 aa9.99□□□□□ -0.81
SMCHD1-202ENST00000577300 WFDC8Q8IUA0 241 aa9.99□□□□□ -0.81
SMCHD1-202ENST00000577300 SMG9Q9H0W8 520 aaKnown RBP9.99□□□□□ -0.81
SMCHD1-202ENST00000577300 SLAIN2Q9P270 581 aa9.99□□□□□ -0.81
SMCHD1-202ENST00000577300 GTF3C3Q9Y5Q9 886 aa9.99□□□□□ -0.81
SMCHD1-202ENST00000577300 LOC102724428A0A0B4J2F2 783 aa9.98□□□□□ -0.81
SMCHD1-202ENST00000577300 EIF2AK2P19525 551 aaKnown RBP9.98□□□□□ -0.81
SMCHD1-202ENST00000577300 SIK1P57059 783 aa9.98□□□□□ -0.81
SMCHD1-202ENST00000577300 TRIP4Q15650 581 aaPredicted RBP9.98□□□□□ -0.81
SMCHD1-202ENST00000577300 SHISA2Q6UWI4 295 aa9.98□□□□□ -0.81
SMCHD1-202ENST00000577300 TXNRD3Q86VQ6 643 aa9.98□□□□□ -0.81
SMCHD1-202ENST00000577300 FBXO11Q86XK2 927 aa9.98□□□□□ -0.81
SMCHD1-202ENST00000577300 PIK3R5Q8WYR1 880 aa9.98□□□□□ -0.81
SMCHD1-202ENST00000577300 STIM2Q9P246 746 aa9.97□□□□□ -0.81
SMCHD1-202ENST00000577300 ATP2B4P23634 1241 aa9.96□□□□□ -0.82
SMCHD1-202ENST00000577300 ZAP70P43403 619 aa9.96□□□□□ -0.82
SMCHD1-202ENST00000577300 ABTB2Q8N961 1025 aa9.96□□□□□ -0.82
SMCHD1-202ENST00000577300 PLD4Q96BZ4 506 aa9.96□□□□□ -0.82
SMCHD1-202ENST00000577300 ARID3CA6NKF2 412 aa9.95□□□□□ -0.82
SMCHD1-202ENST00000577300 J3QW42 95 aa9.95□□□□□ -0.82
SMCHD1-202ENST00000577300 DYRK3O43781 588 aa9.95□□□□□ -0.82
SMCHD1-202ENST00000577300 GHRHP01286 108 aa9.95□□□□□ -0.82
SMCHD1-202ENST00000577300 UBAP1LF5GYI3 381 aa9.94□□□□□ -0.82
SMCHD1-202ENST00000577300 NSUN5Q96P11 429 aaKnown RBP9.94□□□□□ -0.82
SMCHD1-202ENST00000577300 RBSNQ9H1K0 784 aa9.94□□□□□ -0.82
SMCHD1-202ENST00000577300 USP21Q9UK80 565 aa9.94□□□□□ -0.82
SMCHD1-202ENST00000577300 FNDC3AQ9Y2H6 1198 aaKnown RBP9.94□□□□□ -0.82
SMCHD1-202ENST00000577300 XP32Q5T750 250 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms