RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SLAIN2Q9P270 581 aa12.09□□□□□ -0.47
VPS53-220ENST00000576149 SMC3Q9UQE7 1217 aa12.09□□□□□ -0.47
VPS53-220ENST00000576149 STX6O43752 255 aa12.08□□□□□ -0.48
VPS53-220ENST00000576149 ZSCAN22P10073 491 aaPredicted RBP12.08□□□□□ -0.48
VPS53-220ENST00000576149 IL2RBP14784 551 aa12.08□□□□□ -0.48
VPS53-220ENST00000576149 SYT1P21579 422 aa12.08□□□□□ -0.48
VPS53-220ENST00000576149 FOXO4P98177 505 aa12.08□□□□□ -0.48
VPS53-220ENST00000576149 LMBR1LQ6UX01 489 aa12.08□□□□□ -0.48
VPS53-220ENST00000576149 TTLL7Q6ZT98 887 aa12.08□□□□□ -0.48
VPS53-220ENST00000576149 CARD10Q9BWT7 1032 aa12.08□□□□□ -0.48
VPS53-220ENST00000576149 UBR2Q8IWV8 1755 aa12.08□□□□□ -0.48
VPS53-220ENST00000576149 KCPQ6ZWJ8 1503 aa12.08□□□□□ -0.48
VPS53-220ENST00000576149 PSMA5P28066 241 aa12.08□□□□□ -0.48
VPS53-220ENST00000576149 RNF20Q5VTR2 975 aa12.08□□□□□ -0.48
VPS53-220ENST00000576149 LRSAM1Q6UWE0 723 aa12.08□□□□□ -0.48
VPS53-220ENST00000576149 RBSNQ9H1K0 784 aa12.08□□□□□ -0.48
VPS53-220ENST00000576149 USP48Q86UV5 1035 aa12.07□□□□□ -0.48
VPS53-220ENST00000576149 TMEM87AQ8NBN3 555 aa12.07□□□□□ -0.48
VPS53-220ENST00000576149 ANP32BQ92688 251 aaKnown RBP12.07□□□□□ -0.48
VPS53-220ENST00000576149 TRIM44Q96DX7 344 aaPredicted RBP12.07□□□□□ -0.48
VPS53-220ENST00000576149 EDC3Q96F86 508 aaKnown RBP12.07□□□□□ -0.48
VPS53-220ENST00000576149 CWC25Q9NXE8 425 aaPredicted RBP12.07□□□□□ -0.48
VPS53-220ENST00000576149 RFX7Q2KHR2 1363 aa12.07□□□□□ -0.48
VPS53-220ENST00000576149 A1BGP04217 495 aa12.07□□□□□ -0.48
VPS53-220ENST00000576149 CLCN1P35523 988 aa12.07□□□□□ -0.48
VPS53-220ENST00000576149 FOXD4L6Q3SYB3 417 aaPredicted RBP12.07□□□□□ -0.48
VPS53-220ENST00000576149 FOXD4L3Q6VB84 417 aaPredicted RBP12.07□□□□□ -0.48
VPS53-220ENST00000576149 PAXIP1Q6ZW49 1069 aaPredicted RBP12.07□□□□□ -0.48
VPS53-220ENST00000576149 ZNF589Q86UQ0 364 aaPredicted RBP12.07□□□□□ -0.48
VPS53-220ENST00000576149 CCDC83Q8IWF9 413 aa12.07□□□□□ -0.48
VPS53-220ENST00000576149 DBNDD2Q9BQY9 259 aa12.07□□□□□ -0.48
VPS53-220ENST00000576149 PAPPAQ13219 1627 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 TNS2Q63HR2 1409 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 SYCE3A1L190 88 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 TAF5LO75529 589 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 ST3GAL1Q11201 340 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 ME3Q16798 604 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 TSGA10IPQ3SY00 556 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 DDX54Q8TDD1 881 aaKnown RBP12.06□□□□□ -0.48
VPS53-220ENST00000576149 HAUS7Q99871 368 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 ALDH8A1Q9H2A2 487 aaPredicted RBP12.06□□□□□ -0.48
VPS53-220ENST00000576149 GDPD2Q9HCC8 539 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 ESPNB1AK53 854 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 GADD45BO75293 160 aaPredicted RBP12.06□□□□□ -0.48
VPS53-220ENST00000576149 F13A1P00488 732 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 GJB2P29033 226 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 USPL1Q5W0Q7 1092 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 CCDC191Q8NCU4 936 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 HMG20BQ9P0W2 317 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 TPCN1Q9ULQ1 816 aa12.06□□□□□ -0.48
VPS53-220ENST00000576149 NUP188Q5SRE5 1749 aa12.05□□□□□ -0.48
VPS53-220ENST00000576149 SYAP1Q96A49 352 aaPredicted RBP12.05□□□□□ -0.48
VPS53-220ENST00000576149 RPS6KB1P23443 525 aa12.05□□□□□ -0.48
VPS53-220ENST00000576149 COL9A3Q14050 684 aaPredicted RBP12.05□□□□□ -0.48
VPS53-220ENST00000576149 ANKRD1Q15327 319 aa12.05□□□□□ -0.48
VPS53-220ENST00000576149 BLOC1S2Q6QNY1 142 aa12.05□□□□□ -0.48
VPS53-220ENST00000576149 ATG9AQ7Z3C6 839 aa12.05□□□□□ -0.48
VPS53-220ENST00000576149 GPR108Q9NPR9 543 aa12.05□□□□□ -0.48
VPS53-220ENST00000576149 CHMP3Q9Y3E7 222 aa12.05□□□□□ -0.48
VPS53-220ENST00000576149 ATP6V1DQ9Y5K8 247 aa12.05□□□□□ -0.48
VPS53-220ENST00000576149 TAF6LQ9Y6J9 622 aa12.05□□□□□ -0.48
VPS53-220ENST00000576149 DNAJC2Q99543 621 aaKnown RBP12.04□□□□□ -0.48
VPS53-220ENST00000576149 ZBTB3Q9H5J0 574 aa12.04□□□□□ -0.48
VPS53-220ENST00000576149 MTMR6Q9Y217 621 aa12.04□□□□□ -0.48
VPS53-220ENST00000576149 CNPY2Q9Y2B0 182 aa12.04□□□□□ -0.48
VPS53-220ENST00000576149 SHANK3Q9BYB0 1731 aa12.04□□□□□ -0.48
VPS53-220ENST00000576149 TJP1Q07157 1748 aa12.04□□□□□ -0.48
VPS53-220ENST00000576149 ABCA3Q99758 1704 aa12.04□□□□□ -0.48
VPS53-220ENST00000576149 NECAB1Q8N987 351 aa12.03□□□□□ -0.48
VPS53-220ENST00000576149 STRN4Q9NRL3 753 aa12.03□□□□□ -0.48
VPS53-220ENST00000576149 NDUFB9Q9Y6M9 179 aa12.03□□□□□ -0.48
VPS53-220ENST00000576149 ZNF335Q9H4Z2 1342 aaPredicted RBP12.03□□□□□ -0.48
VPS53-220ENST00000576149 IL15P40933 162 aaPredicted RBP12.03□□□□□ -0.48
VPS53-220ENST00000576149 EVA1CP58658 441 aa12.03□□□□□ -0.48
VPS53-220ENST00000576149 DNAJC5Q9H3Z4 198 aa12.03□□□□□ -0.48
VPS53-220ENST00000576149 ZNF609O15014 1411 aa12.03□□□□□ -0.48
VPS53-220ENST00000576149 STRCQ7RTU9 1775 aa12.03□□□□□ -0.48
VPS53-220ENST00000576149 A0A0U1RQG5 324 aaPredicted RBP12.02□□□□□ -0.48
VPS53-220ENST00000576149 KRT32Q14532 448 aa12.02□□□□□ -0.48
VPS53-220ENST00000576149 MCMDC2Q4G0Z9 681 aa12.02□□□□□ -0.48
VPS53-220ENST00000576149 KBTBD3Q8NAB2 608 aa12.02□□□□□ -0.48
VPS53-220ENST00000576149 ATG3Q9NT62 314 aa12.02□□□□□ -0.48
VPS53-220ENST00000576149 PHF14O94880 888 aa12.02□□□□□ -0.49
VPS53-220ENST00000576149 TOB2Q14106 344 aaPredicted RBP12.02□□□□□ -0.49
VPS53-220ENST00000576149 TICAM2Q86XR7 235 aa12.02□□□□□ -0.49
VPS53-220ENST00000576149 PDLIM2Q96JY6 352 aa12.02□□□□□ -0.49
VPS53-220ENST00000576149 ISCA1Q9BUE6 129 aa12.02□□□□□ -0.49
VPS53-220ENST00000576149 EYA2O00167 538 aa12.01□□□□□ -0.49
VPS53-220ENST00000576149 CHGBP05060 677 aa12.01□□□□□ -0.49
VPS53-220ENST00000576149 UBE2HP62256 183 aa12.01□□□□□ -0.49
VPS53-220ENST00000576149 DDX46Q7L014 1031 aaKnown RBP12.01□□□□□ -0.49
VPS53-220ENST00000576149 NEUROD6Q96NK8 337 aa12.01□□□□□ -0.49
VPS53-220ENST00000576149 SEC62Q99442 399 aaKnown RBP12.01□□□□□ -0.49
VPS53-220ENST00000576149 U3KPZ7 1027 aaPredicted RBP12.01□□□□□ -0.49
VPS53-220ENST00000576149 PALLDQ8WX93 1383 aa12.01□□□□□ -0.49
VPS53-220ENST00000576149 SH3TC1Q8TE82 1336 aa12.01□□□□□ -0.49
VPS53-220ENST00000576149 CIAO1O76071 339 aa12.01□□□□□ -0.49
VPS53-220ENST00000576149 TIMM10P62072 90 aa12.01□□□□□ -0.49
VPS53-220ENST00000576149 TCEANC2Q96MN5 208 aa12.01□□□□□ -0.49
VPS53-220ENST00000576149 TSPY26PQ9H489 355 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms