RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 RTL9Q8NET4 1388 aa21.42■■□□□ 1.02
NUP88-210ENST00000574867 BICC1Q9H694 974 aaKnown RBP21.41■■□□□ 1.02
NUP88-210ENST00000574867 NPR1P16066 1061 aa21.41■■□□□ 1.02
NUP88-210ENST00000574867 RABL6Q3YEC7 729 aaPredicted RBP21.41■■□□□ 1.02
NUP88-210ENST00000574867 TTLL11Q8NHH1 800 aa21.41■■□□□ 1.02
NUP88-210ENST00000574867 MASTLQ96GX5 879 aa21.41■■□□□ 1.02
NUP88-210ENST00000574867 BRCA1P38398 1863 aaKnown RBP21.41■■□□□ 1.02
NUP88-210ENST00000574867 CSF1RP07333 972 aa21.4■■□□□ 1.02
NUP88-210ENST00000574867 EPHA10Q5JZY3 1008 aa21.4■■□□□ 1.02
NUP88-210ENST00000574867 STYK1Q6J9G0 422 aa21.4■■□□□ 1.02
NUP88-210ENST00000574867 CRBNQ96SW2 442 aa21.4■■□□□ 1.02
NUP88-210ENST00000574867 ZBTB40Q9NUA8 1239 aa21.4■■□□□ 1.02
NUP88-210ENST00000574867 CHRNA5P30532 468 aa21.4■■□□□ 1.02
NUP88-210ENST00000574867 HOXA10P31260 410 aaPredicted RBP21.4■■□□□ 1.02
NUP88-210ENST00000574867 SYT17Q9BSW7 474 aa21.4■■□□□ 1.02
NUP88-210ENST00000574867 DPEP1P16444 411 aa21.39■■□□□ 1.01
NUP88-210ENST00000574867 LMBR1LQ6UX01 489 aa21.39■■□□□ 1.01
NUP88-210ENST00000574867 RBM17Q96I25 401 aaKnown RBP21.39■■□□□ 1.01
NUP88-210ENST00000574867 DDX46Q7L014 1031 aaKnown RBP21.38■■□□□ 1.01
NUP88-210ENST00000574867 ANKRD44Q8N8A2 993 aa21.38■■□□□ 1.01
NUP88-210ENST00000574867 NLGN2Q8NFZ4 835 aa21.38■■□□□ 1.01
NUP88-210ENST00000574867 CRAMP1Q96RY5 1269 aa21.38■■□□□ 1.01
NUP88-210ENST00000574867 A0A0G2JLW4 131 aa21.37■■□□□ 1.01
NUP88-210ENST00000574867 AAMPQ13685 434 aa21.37■■□□□ 1.01
NUP88-210ENST00000574867 ALDH1B1P30837 517 aa21.36■■□□□ 1.01
NUP88-210ENST00000574867 MTX1Q13505 466 aa21.36■■□□□ 1.01
NUP88-210ENST00000574867 FAM161AQ3B820 660 aa21.36■■□□□ 1.01
NUP88-210ENST00000574867 CNKSR1Q969H4 720 aa21.36■■□□□ 1.01
NUP88-210ENST00000574867 ZNF622Q969S3 477 aaKnown RBP eCLIP21.36■■□□□ 1.017e-8■■□□□ 12.6
NUP88-210ENST00000574867 GREM2Q9H772 168 aa21.36■■□□□ 1.01
NUP88-210ENST00000574867 CHMP3Q9Y3E7 222 aa21.36■■□□□ 1.01
NUP88-210ENST00000574867 KCNA3P22001 575 aa21.36■■□□□ 1.01
NUP88-210ENST00000574867 CCDC85AQ96PX6 553 aaPredicted RBP21.36■■□□□ 1.01
NUP88-210ENST00000574867 CACNA1SQ13698 1873 aa21.36■■□□□ 1.01
NUP88-210ENST00000574867 CDC5LQ99459 802 aaKnown RBP21.35■■□□□ 1.01
NUP88-210ENST00000574867 C1orf115Q9H7X2 142 aa21.35■■□□□ 1.01
NUP88-210ENST00000574867 PIM2Q9P1W9 311 aa21.35■■□□□ 1.01
NUP88-210ENST00000574867 ITGA6P23229 1130 aa21.35■■□□□ 1.01
NUP88-210ENST00000574867 IFIT5Q13325 482 aaKnown RBP21.35■■□□□ 1.01
NUP88-210ENST00000574867 ANKRD18BA2A2Z9 1011 aa21.34■■□□□ 1.01
NUP88-210ENST00000574867 GRAPQ13588 217 aa21.34■■□□□ 1.01
NUP88-210ENST00000574867 CCDC57Q2TAC2 916 aa21.34■■□□□ 1.01
NUP88-210ENST00000574867 GRAPLQ8TC17 118 aaPredicted RBP21.34■■□□□ 1.01
NUP88-210ENST00000574867 TTLL6Q8N841 843 aa21.33■■□□□ 1.01
NUP88-210ENST00000574867 SEC31BQ9NQW1 1179 aa21.33■■□□□ 1
NUP88-210ENST00000574867 TAF1P21675 1872 aa21.33■■□□□ 1
NUP88-210ENST00000574867 IRX6P78412 446 aaPredicted RBP21.32■■□□□ 1
NUP88-210ENST00000574867 SPEF2Q9C093 1822 aa21.32■■□□□ 1
NUP88-210ENST00000574867 NEFLP07196 543 aa21.32■■□□□ 1
NUP88-210ENST00000574867 PRPF40BQ6NWY9 871 aaKnown RBP21.32■■□□□ 1
NUP88-210ENST00000574867 CEP85Q6P2H3 762 aa21.32■■□□□ 1
NUP88-210ENST00000574867 TMC4Q7Z404 712 aa21.32■■□□□ 1
NUP88-210ENST00000574867 ANKRD18AQ8IVF6 992 aa21.32■■□□□ 1
NUP88-210ENST00000574867 EXOC6Q8TAG9 804 aa21.32■■□□□ 1
NUP88-210ENST00000574867 COL4A1P02462 1669 aa21.31■■□□□ 1
NUP88-210ENST00000574867 LRRC37AA6NMS7 1700 aa21.31■■□□□ 1
NUP88-210ENST00000574867 SRGAP3O43295 1099 aa21.31■■□□□ 1
NUP88-210ENST00000574867 BBOX1O75936 387 aa21.31■■□□□ 1
NUP88-210ENST00000574867 DALRD3Q5D0E6 543 aaKnown RBP21.31■■□□□ 1
NUP88-210ENST00000574867 RPAP2Q8IXW5 612 aaPredicted RBP21.31■■□□□ 1
NUP88-210ENST00000574867 SLX4Q8IY92 1834 aa21.31■■□□□ 1
NUP88-210ENST00000574867 ARFGEF1Q9Y6D6 1849 aa21.31■■□□□ 1
NUP88-210ENST00000574867 CELF1Q92879 486 aaKnown RBP21.3■■□□□ 1
NUP88-210ENST00000574867 SRCAPQ6ZRS2 3230 aa21.3■■□□□ 1
NUP88-210ENST00000574867 PPEF1O14829 653 aaPredicted RBP21.3■■□□□ 1
NUP88-210ENST00000574867 IGHMBP2P38935 993 aaKnown RBP21.3■■□□□ 1
NUP88-210ENST00000574867 RPS8P62241 208 aaKnown RBP21.3■■□□□ 1
NUP88-210ENST00000574867 ATP8B2P98198 1209 aa21.3■■□□□ 1
NUP88-210ENST00000574867 TAF7LQ5H9L4 462 aa21.3■■□□□ 1
NUP88-210ENST00000574867 PNMA6EA0A0J9YXQ4 647 aa21.28■■□□□ 1
NUP88-210ENST00000574867 HMMRO75330 724 aa21.28■■□□□ 1
NUP88-210ENST00000574867 RFX5P48382 616 aaPredicted RBP21.28■■□□□ 1
NUP88-210ENST00000574867 SSH3Q8TE77 659 aa21.28■■□□□ 1
NUP88-210ENST00000574867 MPHOSPH8Q99549 860 aa21.28■■□□□ 1
NUP88-210ENST00000574867 POLA2Q14181 598 aa21.27■■□□□ 1
NUP88-210ENST00000574867 BSDC1Q9NW68 430 aaPredicted RBP21.27■■□□□ 1
NUP88-210ENST00000574867 BCS1LQ9Y276 419 aa21.27■□□□□ 0.99
NUP88-210ENST00000574867 SOGA3Q5TF21 947 aa21.26■□□□□ 0.99
NUP88-210ENST00000574867 TMX4Q9H1E5 349 aaPredicted RBP21.26■□□□□ 0.99
NUP88-210ENST00000574867 COPRSQ9NQ92 184 aa21.26■□□□□ 0.99
NUP88-210ENST00000574867 FBXO3Q9UK99 471 aa21.26■□□□□ 0.99
NUP88-210ENST00000574867 PTPN12Q05209 780 aaKnown RBP21.25■□□□□ 0.99
NUP88-210ENST00000574867 ATP6V0A2Q9Y487 856 aa21.25■□□□□ 0.99
NUP88-210ENST00000574867 CC2D2BQ6DHV5 1058 aa21.25■□□□□ 0.99
NUP88-210ENST00000574867 LDHAL6AQ6ZMR3 332 aa21.25■□□□□ 0.99
NUP88-210ENST00000574867 ZNF594Q96JF6 807 aaPredicted RBP21.25■□□□□ 0.99
NUP88-210ENST00000574867 SP8Q8IXZ3 490 aa21.24■□□□□ 0.99
NUP88-210ENST00000574867 WWC3Q9ULE0 1092 aa21.24■□□□□ 0.99
NUP88-210ENST00000574867 GRIPAP1Q4V328 841 aa21.24■□□□□ 0.99
NUP88-210ENST00000574867 C7orf43Q8WVR3 580 aa21.24■□□□□ 0.99
NUP88-210ENST00000574867 A0A1B0GUL6 1792 aa21.23■□□□□ 0.99
NUP88-210ENST00000574867 SIRT2Q8IXJ6 389 aa21.23■□□□□ 0.99
NUP88-210ENST00000574867 KLHDC4Q8TBB5 520 aa21.23■□□□□ 0.99
NUP88-210ENST00000574867 CNNM1Q9NRU3 951 aa21.23■□□□□ 0.99
NUP88-210ENST00000574867 PCDHB15Q9Y5E8 787 aa21.23■□□□□ 0.99
NUP88-210ENST00000574867 C21orf2O43822 256 aa21.22■□□□□ 0.99
NUP88-210ENST00000574867 CIAO1O76071 339 aa21.22■□□□□ 0.99
NUP88-210ENST00000574867 EYA2O00167 538 aa21.22■□□□□ 0.99
NUP88-210ENST00000574867 CCDC93Q567U6 631 aa21.22■□□□□ 0.99
NUP88-210ENST00000574867 LTBP1Q14766 1721 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms