RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 ARHGEF25Q86VW2 580 aa18.53■□□□□ 0.56
NUP88-207ENST00000573584 LEO1Q8WVC0 666 aaPredicted RBP18.53■□□□□ 0.56
NUP88-207ENST00000573584 EDC3Q96F86 508 aaKnown RBP18.53■□□□□ 0.56
NUP88-207ENST00000573584 RGPD2P0DJD1 1756 aa18.53■□□□□ 0.56
NUP88-207ENST00000573584 NEXNQ0ZGT2 675 aa18.53■□□□□ 0.56
NUP88-207ENST00000573584 ZNF710Q8N1W2 664 aa18.53■□□□□ 0.56
NUP88-207ENST00000573584 OVOS2A0A0G2JMS6 1433 aa18.52■□□□□ 0.56
NUP88-207ENST00000573584 ANO6Q4KMQ2 910 aa18.52■□□□□ 0.56
NUP88-207ENST00000573584 DDX19AQ9NUU7 478 aaKnown RBP18.52■□□□□ 0.56
NUP88-207ENST00000573584 FAM177BA6PVY3 158 aa18.51■□□□□ 0.55
NUP88-207ENST00000573584 MYL6BP14649 208 aa18.51■□□□□ 0.55
NUP88-207ENST00000573584 CHAF1AQ13111 956 aaPredicted RBP18.51■□□□□ 0.55
NUP88-207ENST00000573584 CCDC94Q9BW85 323 aaPredicted RBP18.51■□□□□ 0.55
NUP88-207ENST00000573584 CBX8Q9HC52 389 aa18.51■□□□□ 0.55
NUP88-207ENST00000573584 NEURL1BA8MQ27 555 aa18.51■□□□□ 0.55
NUP88-207ENST00000573584 PTGS1P23219 599 aa18.51■□□□□ 0.55
NUP88-207ENST00000573584 KRT32Q14532 448 aa18.51■□□□□ 0.55
NUP88-207ENST00000573584 EPHA10Q5JZY3 1008 aa18.51■□□□□ 0.55
NUP88-207ENST00000573584 CHD2O14647 1828 aaKnown RBP18.51■□□□□ 0.55
NUP88-207ENST00000573584 GCKRQ14397 625 aa18.5■□□□□ 0.55
NUP88-207ENST00000573584 USPL1Q5W0Q7 1092 aa18.5■□□□□ 0.55
NUP88-207ENST00000573584 LMOD2Q6P5Q4 547 aa18.5■□□□□ 0.55
NUP88-207ENST00000573584 JAK2O60674 1132 aa18.5■□□□□ 0.55
NUP88-207ENST00000573584 NEK1Q96PY6 1258 aa18.5■□□□□ 0.55
NUP88-207ENST00000573584 CLSTN2Q9H4D0 955 aa18.5■□□□□ 0.55
NUP88-207ENST00000573584 SLC39A6Q13433 755 aa18.5■□□□□ 0.55
NUP88-207ENST00000573584 BICD2Q8TD16 824 aa18.5■□□□□ 0.55
NUP88-207ENST00000573584 GTF3C6Q969F1 213 aa18.5■□□□□ 0.55
NUP88-207ENST00000573584 JCADQ9P266 1359 aa18.49■□□□□ 0.55
NUP88-207ENST00000573584 NR1I2O75469 434 aa18.49■□□□□ 0.55
NUP88-207ENST00000573584 DRC7Q8IY82 874 aa18.49■□□□□ 0.55
NUP88-207ENST00000573584 MYD88Q99836 296 aa18.49■□□□□ 0.55
NUP88-207ENST00000573584 ATP5JP18859 108 aa18.49■□□□□ 0.55
NUP88-207ENST00000573584 ZNF790Q6PG37 636 aa18.49■□□□□ 0.55
NUP88-207ENST00000573584 RBM43Q6ZSC3 357 aaKnown RBP18.49■□□□□ 0.55
NUP88-207ENST00000573584 COPS6Q7L5N1 327 aa18.49■□□□□ 0.55
NUP88-207ENST00000573584 XAGE3Q8WTP9 111 aa18.49■□□□□ 0.55
NUP88-207ENST00000573584 PGBD1Q96JS3 809 aa18.49■□□□□ 0.55
NUP88-207ENST00000573584 DBNLQ9UJU6 430 aaKnown RBP18.49■□□□□ 0.55
NUP88-207ENST00000573584 AXIN2Q9Y2T1 843 aa18.49■□□□□ 0.55
NUP88-207ENST00000573584 CCDC186Q7Z3E2 898 aa18.48■□□□□ 0.55
NUP88-207ENST00000573584 BRF1Q92994 677 aa18.48■□□□□ 0.55
NUP88-207ENST00000573584 TRIM5Q9C035 493 aa18.48■□□□□ 0.55
NUP88-207ENST00000573584 NDUFB9Q9Y6M9 179 aa18.48■□□□□ 0.55
NUP88-207ENST00000573584 H3BQV1 296 aa18.47■□□□□ 0.55
NUP88-207ENST00000573584 HSP90B1P14625 803 aaKnown RBP18.47■□□□□ 0.55
NUP88-207ENST00000573584 IFFO2Q5TF58 517 aa18.47■□□□□ 0.55
NUP88-207ENST00000573584 Q6ZUG5 572 aa18.47■□□□□ 0.55
NUP88-207ENST00000573584 DDX11Q96FC9 970 aa18.47■□□□□ 0.55
NUP88-207ENST00000573584 METTL22Q9BUU2 404 aaPredicted RBP18.47■□□□□ 0.55
NUP88-207ENST00000573584 BCL2L12Q9HB09 334 aa18.47■□□□□ 0.55
NUP88-207ENST00000573584 COPRSQ9NQ92 184 aa18.47■□□□□ 0.55
NUP88-207ENST00000573584 RIOK3O14730 519 aaKnown RBP18.47■□□□□ 0.55
NUP88-207ENST00000573584 COL15A1P39059 1388 aa18.47■□□□□ 0.55
NUP88-207ENST00000573584 ZNF165P49910 485 aa18.46■□□□□ 0.55
NUP88-207ENST00000573584 TFCP2Q12800 502 aa18.46■□□□□ 0.55
NUP88-207ENST00000573584 TNNI3KQ59H18 835 aa18.46■□□□□ 0.55
NUP88-207ENST00000573584 FPGT-TNNI3KV9GXZ4 949 aa18.46■□□□□ 0.55
NUP88-207ENST00000573584 CCDC129Q6ZRS4 1044 aa18.46■□□□□ 0.55
NUP88-207ENST00000573584 CHGBP05060 677 aa18.46■□□□□ 0.55
NUP88-207ENST00000573584 RESTQ13127 1097 aa18.46■□□□□ 0.55
NUP88-207ENST00000573584 ORAI2Q96SN7 254 aa18.46■□□□□ 0.55
NUP88-207ENST00000573584 DNAJC2Q99543 621 aaKnown RBP18.46■□□□□ 0.55
NUP88-207ENST00000573584 DNAJC25Q9H1X3 360 aa18.46■□□□□ 0.55
NUP88-207ENST00000573584 U3KPZ7 1027 aaPredicted RBP18.46■□□□□ 0.55
NUP88-207ENST00000573584 ZNF75DP51815 510 aa18.45■□□□□ 0.54
NUP88-207ENST00000573584 TDRD7Q8NHU6 1098 aaKnown RBP18.45■□□□□ 0.54
NUP88-207ENST00000573584 SEC62Q99442 399 aaKnown RBP18.45■□□□□ 0.54
NUP88-207ENST00000573584 PHRF1Q9P1Y6 1649 aaKnown RBP18.45■□□□□ 0.54
NUP88-207ENST00000573584 NRBP1Q9UHY1 535 aa18.45■□□□□ 0.54
NUP88-207ENST00000573584 CYP21A2P08686 494 aa18.45■□□□□ 0.54
NUP88-207ENST00000573584 PTPN12Q05209 780 aaKnown RBP18.45■□□□□ 0.54
NUP88-207ENST00000573584 LRMPQ12912 555 aa18.45■□□□□ 0.54
NUP88-207ENST00000573584 ANKRD13DQ6ZTN6 518 aa18.45■□□□□ 0.54
NUP88-207ENST00000573584 PLA2G4DQ86XP0 818 aa18.45■□□□□ 0.54
NUP88-207ENST00000573584 SMAP1Q8IYB5 467 aaPredicted RBP18.45■□□□□ 0.54
NUP88-207ENST00000573584 ZSCAN16Q9H4T2 348 aaPredicted RBP18.45■□□□□ 0.54
NUP88-207ENST00000573584 CFAP45Q9UL16 551 aa18.45■□□□□ 0.54
NUP88-207ENST00000573584 FGD1P98174 961 aa18.44■□□□□ 0.54
NUP88-207ENST00000573584 MCMDC2Q4G0Z9 681 aa18.44■□□□□ 0.54
NUP88-207ENST00000573584 RFX5P48382 616 aaPredicted RBP18.44■□□□□ 0.54
NUP88-207ENST00000573584 ANKLE2Q86XL3 938 aa18.44■□□□□ 0.54
NUP88-207ENST00000573584 NFATC2IPQ8NCF5 419 aa18.44■□□□□ 0.54
NUP88-207ENST00000573584 LRRC2Q9BYS8 371 aa18.44■□□□□ 0.54
NUP88-207ENST00000573584 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.43■□□□□ 0.54
NUP88-207ENST00000573584 SLC52A2Q9HAB3 445 aa18.43■□□□□ 0.54
NUP88-207ENST00000573584 MRC1P22897 1456 aa18.43■□□□□ 0.54
NUP88-207ENST00000573584 CEBPZQ03701 1054 aaKnown RBP18.43■□□□□ 0.54
NUP88-207ENST00000573584 DBNDD2Q9BQY9 259 aa18.43■□□□□ 0.54
NUP88-207ENST00000573584 SCRN1Q12765 414 aa18.43■□□□□ 0.54
NUP88-207ENST00000573584 UBE3BQ7Z3V4 1068 aa18.43■□□□□ 0.54
NUP88-207ENST00000573584 ZNF609O15014 1411 aa18.42■□□□□ 0.54
NUP88-207ENST00000573584 PPP4R3BQ5MIZ7 849 aa18.42■□□□□ 0.54
NUP88-207ENST00000573584 ZSCAN25Q6NSZ9 544 aa18.42■□□□□ 0.54
NUP88-207ENST00000573584 DDX46Q7L014 1031 aaKnown RBP18.42■□□□□ 0.54
NUP88-207ENST00000573584 FER1L4A9Z1Z3 1794 aa18.42■□□□□ 0.54
NUP88-207ENST00000573584 CAVIN2O95810 425 aa18.42■□□□□ 0.54
NUP88-207ENST00000573584 ZNF496Q96IT1 587 aaPredicted RBP18.42■□□□□ 0.54
NUP88-207ENST00000573584 HAUS7Q99871 368 aa18.42■□□□□ 0.54
NUP88-207ENST00000573584 PIP4K2AP48426 406 aaPredicted RBP18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms