RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 TM4SF1P30408 202 aa9.82□□□□□ -0.84
NUP88-205ENST00000572809 NFE2L2Q16236 605 aa9.82□□□□□ -0.84
NUP88-205ENST00000572809 PRKD2Q9BZL6 878 aa9.82□□□□□ -0.84
NUP88-205ENST00000572809 USP16Q9Y5T5 823 aa9.82□□□□□ -0.84
NUP88-205ENST00000572809 CICQ96RK0 1608 aaPredicted RBP9.82□□□□□ -0.84
NUP88-205ENST00000572809 MAPK8IP3Q9UPT6 1336 aa9.82□□□□□ -0.84
NUP88-205ENST00000572809 A0A0G2JLW4 131 aa9.81□□□□□ -0.84
NUP88-205ENST00000572809 A1BGP04217 495 aa9.81□□□□□ -0.84
NUP88-205ENST00000572809 SNRPA1P09661 255 aaKnown RBP9.81□□□□□ -0.84
NUP88-205ENST00000572809 EIF5P55010 431 aaKnown RBP9.81□□□□□ -0.84
NUP88-205ENST00000572809 NPM2Q86SE8 214 aaKnown RBP9.81□□□□□ -0.84
NUP88-205ENST00000572809 MIS18AQ9NYP9 233 aa9.81□□□□□ -0.84
NUP88-205ENST00000572809 COL15A1P39059 1388 aa9.8□□□□□ -0.84
NUP88-205ENST00000572809 IL6STP40189 918 aaPredicted RBP9.8□□□□□ -0.84
NUP88-205ENST00000572809 PNISRQ8TF01 805 aaKnown RBP9.8□□□□□ -0.84
NUP88-205ENST00000572809 WWC3Q9ULE0 1092 aa9.8□□□□□ -0.84
NUP88-205ENST00000572809 ZNF330Q9Y3S2 320 aaPredicted RBP9.8□□□□□ -0.84
NUP88-205ENST00000572809 SIPA1L3O60292 1781 aaPredicted RBP9.79□□□□□ -0.84
NUP88-205ENST00000572809 UBR2Q8IWV8 1755 aa9.79□□□□□ -0.84
NUP88-205ENST00000572809 PRAMEF22A3QJZ6 481 aa9.79□□□□□ -0.84
NUP88-205ENST00000572809 POLRMTO00411 1230 aaKnown RBP9.79□□□□□ -0.84
NUP88-205ENST00000572809 DPEP1P16444 411 aa9.79□□□□□ -0.84
NUP88-205ENST00000572809 RIPK4P57078 832 aa9.79□□□□□ -0.84
NUP88-205ENST00000572809 PPP4CP60510 307 aa9.79□□□□□ -0.84
NUP88-205ENST00000572809 DDR1Q08345 913 aa9.79□□□□□ -0.84
NUP88-205ENST00000572809 NFIXQ14938 502 aa9.79□□□□□ -0.84
NUP88-205ENST00000572809 ZNF784Q8NCA9 323 aaPredicted RBP9.79□□□□□ -0.84
NUP88-205ENST00000572809 PRKRIP1Q9H875 184 aaPredicted RBP9.79□□□□□ -0.84
NUP88-205ENST00000572809 DAXXQ9UER7 740 aaPredicted RBP9.79□□□□□ -0.84
NUP88-205ENST00000572809 TBC1D2BQ9UPU7 963 aa9.79□□□□□ -0.84
NUP88-205ENST00000572809 C4AP0C0L4 1744 aa9.79□□□□□ -0.84
NUP88-205ENST00000572809 GRXCR2A6NFK2 248 aa9.78□□□□□ -0.84
NUP88-205ENST00000572809 NRG2O14511 850 aaPredicted RBP9.78□□□□□ -0.84
NUP88-205ENST00000572809 SERPINB2P05120 415 aa9.78□□□□□ -0.84
NUP88-205ENST00000572809 WDR43Q15061 677 aaKnown RBP eCLIP9.78□□□□□ -0.84
NUP88-205ENST00000572809 BCS1LQ9Y276 419 aa9.78□□□□□ -0.84
NUP88-205ENST00000572809 CHD4Q14839 1912 aa9.78□□□□□ -0.84
NUP88-205ENST00000572809 KCNA3P22001 575 aa9.77□□□□□ -0.85
NUP88-205ENST00000572809 TMPOP42166 694 aaKnown RBP9.77□□□□□ -0.85
NUP88-205ENST00000572809 PIP4K2AP48426 406 aaPredicted RBP9.77□□□□□ -0.85
NUP88-205ENST00000572809 TJAP1Q5JTD0 557 aa9.77□□□□□ -0.85
NUP88-205ENST00000572809 BICDL1Q6ZP65 573 aa9.77□□□□□ -0.85
NUP88-205ENST00000572809 RUNDC1Q96C34 613 aa9.77□□□□□ -0.85
NUP88-205ENST00000572809 THUMPD2Q9BTF0 503 aaKnown RBP9.77□□□□□ -0.85
NUP88-205ENST00000572809 PIM2Q9P1W9 311 aa9.77□□□□□ -0.85
NUP88-205ENST00000572809 ADAMTS8Q9UP79 889 aa9.77□□□□□ -0.85
NUP88-205ENST00000572809 C10orf71Q711Q0 1435 aa9.76□□□□□ -0.85
NUP88-205ENST00000572809 EIF4A1P60842 406 aaKnown RBP9.76□□□□□ -0.85
NUP88-205ENST00000572809 TBC1D9BQ66K14 1250 aa9.76□□□□□ -0.85
NUP88-205ENST00000572809 DZIP3Q86Y13 1208 aaKnown RBP9.76□□□□□ -0.85
NUP88-205ENST00000572809 CCDC146Q8IYE0 955 aa9.76□□□□□ -0.85
NUP88-205ENST00000572809 PXDNLA1KZ92 1463 aa9.76□□□□□ -0.85
NUP88-205ENST00000572809 NBPF26B4DH59 902 aa9.75□□□□□ -0.85
NUP88-205ENST00000572809 GIGYF1O75420 1035 aaPredicted RBP9.75□□□□□ -0.85
NUP88-205ENST00000572809 CHRNA5P30532 468 aa9.75□□□□□ -0.85
NUP88-205ENST00000572809 LMOD3Q0VAK6 560 aa9.75□□□□□ -0.85
NUP88-205ENST00000572809 NBPF10Q6P3W6 841 aaKnown RBP9.75□□□□□ -0.85
NUP88-205ENST00000572809 ARHGAP27Q6ZUM4 889 aa9.75□□□□□ -0.85
NUP88-205ENST00000572809 PACS2Q86VP3 889 aa9.75□□□□□ -0.85
NUP88-205ENST00000572809 NBPF15Q8N660 670 aa9.75□□□□□ -0.85
NUP88-205ENST00000572809 DDX12PQ92771 950 aa9.75□□□□□ -0.85
NUP88-205ENST00000572809 SETDB2Q96T68 719 aa9.75□□□□□ -0.85
NUP88-205ENST00000572809 TSKSQ9UJT2 592 aa9.75□□□□□ -0.85
NUP88-205ENST00000572809 RRP7AQ9Y3A4 280 aaKnown RBP9.75□□□□□ -0.85
NUP88-205ENST00000572809 DLG5Q8TDM6 1919 aa9.75□□□□□ -0.85
NUP88-205ENST00000572809 KIF13BQ9NQT8 1826 aa9.75□□□□□ -0.85
NUP88-205ENST00000572809 N4BP2Q86UW6 1770 aaPredicted RBP9.74□□□□□ -0.85
NUP88-205ENST00000572809 CAMTA2O94983 1202 aa9.74□□□□□ -0.85
NUP88-205ENST00000572809 DALRD3Q5D0E6 543 aaKnown RBP9.74□□□□□ -0.85
NUP88-205ENST00000572809 ZNF787Q6DD87 383 aa9.74□□□□□ -0.85
NUP88-205ENST00000572809 PPP1R18Q6NYC8 613 aa9.74□□□□□ -0.85
NUP88-205ENST00000572809 CLEC4GQ6UXB4 293 aa9.74□□□□□ -0.85
NUP88-205ENST00000572809 BABAM1Q9NWV8 329 aa9.74□□□□□ -0.85
NUP88-205ENST00000572809 TSPYL4Q9UJ04 414 aa9.74□□□□□ -0.85
NUP88-205ENST00000572809 UTRNP46939 3433 aa9.74□□□□□ -0.85
NUP88-205ENST00000572809 H0YIN7 160 aa9.73□□□□□ -0.85
NUP88-205ENST00000572809 NGEFQ8N5V2 710 aa9.73□□□□□ -0.85
NUP88-205ENST00000572809 NPHP1O15259 732 aa9.72□□□□□ -0.85
NUP88-205ENST00000572809 PDE6BP35913 854 aa9.72□□□□□ -0.85
NUP88-205ENST00000572809 PRR5LQ6MZQ0 368 aa9.72□□□□□ -0.85
NUP88-205ENST00000572809 SAMD7Q7Z3H4 446 aa9.72□□□□□ -0.85
NUP88-205ENST00000572809 C2CD5Q86YS7 1000 aa9.72□□□□□ -0.85
NUP88-205ENST00000572809 MTRQ99707 1265 aa9.72□□□□□ -0.85
NUP88-205ENST00000572809 BRIP1Q9BX63 1249 aa9.72□□□□□ -0.85
NUP88-205ENST00000572809 ZNF652Q9Y2D9 606 aa9.72□□□□□ -0.85
NUP88-205ENST00000572809 V9GY48 417 aaPredicted RBP9.72□□□□□ -0.85
NUP88-205ENST00000572809 KIAA1551Q9HCM1 1747 aa9.71□□□□□ -0.85
NUP88-205ENST00000572809 SMAPO00193 183 aa9.71□□□□□ -0.86
NUP88-205ENST00000572809 CHL1O00533 1208 aa9.71□□□□□ -0.86
NUP88-205ENST00000572809 MYL6BP14649 208 aa9.71□□□□□ -0.86
NUP88-205ENST00000572809 EIF2S2P20042 333 aaKnown RBP9.71□□□□□ -0.86
NUP88-205ENST00000572809 CCDC24Q8N4L8 307 aa9.71□□□□□ -0.86
NUP88-205ENST00000572809 TTLL6Q8N841 843 aa9.71□□□□□ -0.86
NUP88-205ENST00000572809 IL21Q9HBE4 155 aa9.71□□□□□ -0.86
NUP88-205ENST00000572809 PDZRN3Q9UPQ7 1066 aa9.71□□□□□ -0.86
NUP88-205ENST00000572809 LAS1LQ9Y4W2 734 aaKnown RBP9.71□□□□□ -0.86
NUP88-205ENST00000572809 CARMIL3Q8ND23 1372 aa9.71□□□□□ -0.86
NUP88-205ENST00000572809 AFDNP55196 1824 aaKnown RBP9.7□□□□□ -0.86
NUP88-205ENST00000572809 ERVV-1B6SEH8 477 aa9.7□□□□□ -0.86
NUP88-205ENST00000572809 APAF1O14727 1248 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms