RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 C16orf71Q8IYS4 520 aaPredicted RBP25.72■■□□□ 1.71
NUP88-204ENST00000572290 MIER1Q8N108 512 aa25.72■■□□□ 1.71
NUP88-204ENST00000572290 PDE8AO60658 829 aa25.71■■□□□ 1.71
NUP88-204ENST00000572290 CDHR2Q9BYE9 1310 aa25.7■■□□□ 1.71
NUP88-204ENST00000572290 CELF1Q92879 486 aaKnown RBP25.7■■□□□ 1.7
NUP88-204ENST00000572290 VEGFAP15692 232 aaPredicted RBP25.69■■□□□ 1.7
NUP88-204ENST00000572290 JDP2Q8WYK2 163 aa25.69■■□□□ 1.7
NUP88-204ENST00000572290 TIAM2Q8IVF5 1701 aa25.68■■□□□ 1.7
NUP88-204ENST00000572290 DDNO94850 711 aaPredicted RBP25.68■■□□□ 1.7
NUP88-204ENST00000572290 CCDC152Q4G0S7 254 aa25.68■■□□□ 1.7
NUP88-204ENST00000572290 DPP8Q6V1X1 898 aaPredicted RBP25.68■■□□□ 1.7
NUP88-204ENST00000572290 MPNDQ8N594 471 aa25.68■■□□□ 1.7
NUP88-204ENST00000572290 SUPT20HQ8NEM7 779 aa25.68■■□□□ 1.7
NUP88-204ENST00000572290 LINS1Q8NG48 757 aa25.68■■□□□ 1.7
NUP88-204ENST00000572290 CDCA7LQ96GN5 454 aa25.68■■□□□ 1.7
NUP88-204ENST00000572290 GCKRQ14397 625 aa25.67■■□□□ 1.7
NUP88-204ENST00000572290 DDX60Q8IY21 1712 aaKnown RBP25.66■■□□□ 1.7
NUP88-204ENST00000572290 H7C1W4 665 aa25.66■■□□□ 1.7
NUP88-204ENST00000572290 FZD9O00144 591 aa25.66■■□□□ 1.7
NUP88-204ENST00000572290 LARGE2Q8N3Y3 721 aa25.66■■□□□ 1.7
NUP88-204ENST00000572290 RBM46Q8TBY0 533 aaKnown RBP25.66■■□□□ 1.7
NUP88-204ENST00000572290 RTFDC1Q9BY42 306 aaPredicted RBP25.66■■□□□ 1.7
NUP88-204ENST00000572290 F6X3S4 739 aa25.65■■□□□ 1.7
NUP88-204ENST00000572290 RPS8P62241 208 aaKnown RBP25.65■■□□□ 1.7
NUP88-204ENST00000572290 CCDC85AQ96PX6 553 aaPredicted RBP25.65■■□□□ 1.7
NUP88-204ENST00000572290 VPS33BQ9H267 617 aa25.65■■□□□ 1.7
NUP88-204ENST00000572290 SEC31BQ9NQW1 1179 aa25.65■■□□□ 1.7
NUP88-204ENST00000572290 ZNF541Q9H0D2 1346 aa25.64■■□□□ 1.7
NUP88-204ENST00000572290 LAMB2P55268 1798 aa25.64■■□□□ 1.7
NUP88-204ENST00000572290 POTECB2RU33 542 aa25.64■■□□□ 1.7
NUP88-204ENST00000572290 PPIP5K2O43314 1243 aa25.64■■□□□ 1.7
NUP88-204ENST00000572290 CTSWP56202 376 aa25.64■■□□□ 1.7
NUP88-204ENST00000572290 UBE3BQ7Z3V4 1068 aa25.64■■□□□ 1.7
NUP88-204ENST00000572290 TRMT2AQ8IZ69 625 aaKnown RBP25.63■■□□□ 1.69
NUP88-204ENST00000572290 EIF6P56537 245 aaKnown RBP25.62■■□□□ 1.69
NUP88-204ENST00000572290 AOC3Q16853 763 aa25.62■■□□□ 1.69
NUP88-204ENST00000572290 BEND3Q5T5X7 828 aa25.62■■□□□ 1.69
NUP88-204ENST00000572290 NIM1KQ8IY84 436 aa25.62■■□□□ 1.69
NUP88-204ENST00000572290 MRPL50Q8N5N7 158 aaKnown RBP25.62■■□□□ 1.69
NUP88-204ENST00000572290 TTLL11Q8NHH1 800 aa25.61■■□□□ 1.69
NUP88-204ENST00000572290 NSFL1CQ9UNZ2 370 aaKnown RBP25.61■■□□□ 1.69
NUP88-204ENST00000572290 CCDC88AQ3V6T2 1871 aa25.6■■□□□ 1.69
NUP88-204ENST00000572290 HSPA6P17066 643 aa25.6■■□□□ 1.69
NUP88-204ENST00000572290 L3MBTL3Q96JM7 780 aaPredicted RBP25.6■■□□□ 1.69
NUP88-204ENST00000572290 DICER1Q9UPY3 1922 aaKnown RBP25.59■■□□□ 1.69
NUP88-204ENST00000572290 CASP7P55210 303 aa25.59■■□□□ 1.69
NUP88-204ENST00000572290 KIAA2012Q0VF49 1180 aa25.59■■□□□ 1.69
NUP88-204ENST00000572290 FSTL1Q12841 308 aa25.59■■□□□ 1.69
NUP88-204ENST00000572290 ANKRD18AQ8IVF6 992 aa25.59■■□□□ 1.69
NUP88-204ENST00000572290 SSH1Q8WYL5 1049 aa25.59■■□□□ 1.69
NUP88-204ENST00000572290 PLA2G12BQ9BX93 195 aa25.59■■□□□ 1.69
NUP88-204ENST00000572290 COL4A5P29400 1685 aa25.58■■□□□ 1.69
NUP88-204ENST00000572290 WDR90Q96KV7 1748 aa25.58■■□□□ 1.69
NUP88-204ENST00000572290 IQCA1LA6NCM1 817 aa25.58■■□□□ 1.69
NUP88-204ENST00000572290 GPSM2P81274 684 aa25.58■■□□□ 1.69
NUP88-204ENST00000572290 SLC4A10Q6U841 1118 aa25.58■■□□□ 1.69
NUP88-204ENST00000572290 GPC2Q8N158 579 aa25.58■■□□□ 1.69
NUP88-204ENST00000572290 CDC5LQ99459 802 aaKnown RBP25.58■■□□□ 1.69
NUP88-204ENST00000572290 SMC1BQ8NDV3 1235 aa25.57■■□□□ 1.68
NUP88-204ENST00000572290 GREM2Q9H772 168 aa25.57■■□□□ 1.68
NUP88-204ENST00000572290 COL4A1P02462 1669 aa25.57■■□□□ 1.68
NUP88-204ENST00000572290 ALDH1L2Q3SY69 923 aa25.56■■□□□ 1.68
NUP88-204ENST00000572290 GJA3Q9Y6H8 435 aa25.56■■□□□ 1.68
NUP88-204ENST00000572290 RTL9Q8NET4 1388 aa25.56■■□□□ 1.68
NUP88-204ENST00000572290 C6orf229H3BNL8 230 aa25.55■■□□□ 1.68
NUP88-204ENST00000572290 ALDH1L1O75891 902 aa25.55■■□□□ 1.68
NUP88-204ENST00000572290 CT47B1P0C2W7 299 aaPredicted RBP25.55■■□□□ 1.68
NUP88-204ENST00000572290 BCL2L13Q9BXK5 485 aa25.55■■□□□ 1.68
NUP88-204ENST00000572290 SRCIN1Q9C0H9 1055 aa25.55■■□□□ 1.68
NUP88-204ENST00000572290 POLLQ9UGP5 575 aa25.55■■□□□ 1.68
NUP88-204ENST00000572290 ZNRF3Q9ULT6 936 aa25.55■■□□□ 1.68
NUP88-204ENST00000572290 PTPRCP08575 1304 aa25.55■■□□□ 1.68
NUP88-204ENST00000572290 WASHC4Q2M389 1173 aa25.54■■□□□ 1.68
NUP88-204ENST00000572290 EYA3Q99504 573 aa25.54■■□□□ 1.68
NUP88-204ENST00000572290 TAF1DQ9H5J8 278 aaPredicted RBP25.54■■□□□ 1.68
NUP88-204ENST00000572290 PODXL2Q9NZ53 605 aa25.54■■□□□ 1.68
NUP88-204ENST00000572290 HACL1Q9UJ83 578 aa25.54■■□□□ 1.68
NUP88-204ENST00000572290 CSF1RP07333 972 aa25.53■■□□□ 1.68
NUP88-204ENST00000572290 TBC1D16Q8TBP0 767 aa25.53■■□□□ 1.68
NUP88-204ENST00000572290 SMC4Q9NTJ3 1288 aa25.53■■□□□ 1.68
NUP88-204ENST00000572290 ANKIB1Q9P2G1 1089 aa25.53■■□□□ 1.68
NUP88-204ENST00000572290 LRRC37AA6NMS7 1700 aa25.52■■□□□ 1.68
NUP88-204ENST00000572290 GRM8O00222 908 aa25.52■■□□□ 1.68
NUP88-204ENST00000572290 C9orf78Q9NZ63 289 aaPredicted RBP25.52■■□□□ 1.68
NUP88-204ENST00000572290 DUOX1Q9NRD9 1551 aa25.52■■□□□ 1.68
NUP88-204ENST00000572290 RIMBP2O15034 1052 aa25.51■■□□□ 1.67
NUP88-204ENST00000572290 CXCL9Q07325 125 aa25.51■■□□□ 1.67
NUP88-204ENST00000572290 BSDC1Q9NW68 430 aaPredicted RBP25.51■■□□□ 1.67
NUP88-204ENST00000572290 GGA1Q9UJY5 639 aa25.51■■□□□ 1.67
NUP88-204ENST00000572290 CACNA1FO60840 1977 aa25.51■■□□□ 1.67
NUP88-204ENST00000572290 UFL1O94874 794 aa25.5■■□□□ 1.67
NUP88-204ENST00000572290 TAF1P21675 1872 aa25.5■■□□□ 1.67
NUP88-204ENST00000572290 ITGA6P23229 1130 aa25.5■■□□□ 1.67
NUP88-204ENST00000572290 IGHMBP2P38935 993 aaKnown RBP25.5■■□□□ 1.67
NUP88-204ENST00000572290 HNRNPUQ00839 825 aaKnown RBP eCLIP25.5■■□□□ 1.67
NUP88-204ENST00000572290 FAM161AQ3B820 660 aa25.5■■□□□ 1.67
NUP88-204ENST00000572290 XDHP47989 1333 aa25.49■■□□□ 1.67
NUP88-204ENST00000572290 EPHX2P34913 555 aa25.49■■□□□ 1.67
NUP88-204ENST00000572290 FOXO4P98177 505 aa25.49■■□□□ 1.67
NUP88-204ENST00000572290 CIAPIN1Q6FI81 312 aa25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms