RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 NUTM1Q86Y26 1132 aa10.63□□□□□ -0.71
SF3B3-212ENST00000568539 SYNE4Q8N205 404 aa10.63□□□□□ -0.71
SF3B3-212ENST00000568539 JARID2Q92833 1246 aaPredicted RBP10.63□□□□□ -0.71
SF3B3-212ENST00000568539 CHMP4BQ9H444 224 aaKnown RBP10.63□□□□□ -0.71
SF3B3-212ENST00000568539 N4BP2Q86UW6 1770 aaPredicted RBP10.62□□□□□ -0.71
SF3B3-212ENST00000568539 COL24A1Q17RW2 1714 aa10.62□□□□□ -0.71
SF3B3-212ENST00000568539 PITPNM1O00562 1244 aa10.62□□□□□ -0.71
SF3B3-212ENST00000568539 NEFLP07196 543 aa10.62□□□□□ -0.71
SF3B3-212ENST00000568539 ERFEQ4G0M1 354 aa10.62□□□□□ -0.71
SF3B3-212ENST00000568539 RTL5Q5HYW3 569 aaPredicted RBP10.62□□□□□ -0.71
SF3B3-212ENST00000568539 SLC10A5Q5PT55 438 aa10.62□□□□□ -0.71
SF3B3-212ENST00000568539 PRR5LQ6MZQ0 368 aa10.62□□□□□ -0.71
SF3B3-212ENST00000568539 CNBD1Q8NA66 436 aa10.62□□□□□ -0.71
SF3B3-212ENST00000568539 KAZALD1Q96I82 304 aa10.62□□□□□ -0.71
SF3B3-212ENST00000568539 SUCLG2Q96I99 432 aa10.62□□□□□ -0.71
SF3B3-212ENST00000568539 SGIP1Q9BQI5 828 aa10.62□□□□□ -0.71
SF3B3-212ENST00000568539 PARP3Q9Y6F1 533 aa10.62□□□□□ -0.71
SF3B3-212ENST00000568539 ABCC12Q96J65 1359 aa10.62□□□□□ -0.71
SF3B3-212ENST00000568539 ANKRD36CQ5JPF3 1778 aa10.62□□□□□ -0.71
SF3B3-212ENST00000568539 IRS4O14654 1257 aaPredicted RBP10.61□□□□□ -0.71
SF3B3-212ENST00000568539 GNAI2P04899 355 aa10.61□□□□□ -0.71
SF3B3-212ENST00000568539 PLA2G12BQ9BX93 195 aa10.61□□□□□ -0.71
SF3B3-212ENST00000568539 HDAC5Q9UQL6 1122 aa10.61□□□□□ -0.71
SF3B3-212ENST00000568539 LRRFIP2Q9Y608 721 aaKnown RBP10.61□□□□□ -0.71
SF3B3-212ENST00000568539 NUP98P52948 1817 aa10.61□□□□□ -0.71
SF3B3-212ENST00000568539 RIC1Q4ADV7 1423 aa10.6□□□□□ -0.71
SF3B3-212ENST00000568539 NPHP1O15259 732 aa10.6□□□□□ -0.71
SF3B3-212ENST00000568539 HCLS1P14317 486 aaPredicted RBP10.6□□□□□ -0.71
SF3B3-212ENST00000568539 GTF2E1P29083 439 aaPredicted RBP10.6□□□□□ -0.71
SF3B3-212ENST00000568539 PTGER2P43116 358 aa10.6□□□□□ -0.71
SF3B3-212ENST00000568539 FOXO4P98177 505 aa10.6□□□□□ -0.71
SF3B3-212ENST00000568539 AAMPQ13685 434 aa10.6□□□□□ -0.71
SF3B3-212ENST00000568539 EPHA10Q5JZY3 1008 aa10.6□□□□□ -0.71
SF3B3-212ENST00000568539 HS6ST3Q8IZP7 471 aa10.6□□□□□ -0.71
SF3B3-212ENST00000568539 CCDC24Q8N4L8 307 aa10.6□□□□□ -0.71
SF3B3-212ENST00000568539 C1orf115Q9H7X2 142 aa10.6□□□□□ -0.71
SF3B3-212ENST00000568539 PDE8AO60658 829 aa10.59□□□□□ -0.71
SF3B3-212ENST00000568539 HSP90B1P14625 803 aaKnown RBP10.59□□□□□ -0.71
SF3B3-212ENST00000568539 POLD1P28340 1107 aa10.59□□□□□ -0.71
SF3B3-212ENST00000568539 ST5P78524 1137 aa10.59□□□□□ -0.71
SF3B3-212ENST00000568539 RABL6Q3YEC7 729 aaPredicted RBP10.59□□□□□ -0.71
SF3B3-212ENST00000568539 ANKRD44Q8N8A2 993 aa10.59□□□□□ -0.71
SF3B3-212ENST00000568539 BICC1Q9H694 974 aaKnown RBP10.59□□□□□ -0.71
SF3B3-212ENST00000568539 NRXN2Q9P2S2 1712 aa10.58□□□□□ -0.72
SF3B3-212ENST00000568539 CHD4Q14839 1912 aa10.58□□□□□ -0.72
SF3B3-212ENST00000568539 KLRG2A4D1S0 409 aaPredicted RBP10.58□□□□□ -0.72
SF3B3-212ENST00000568539 CSF1RP07333 972 aa10.58□□□□□ -0.72
SF3B3-212ENST00000568539 CTSWP56202 376 aa10.58□□□□□ -0.72
SF3B3-212ENST00000568539 MTX1Q13505 466 aa10.58□□□□□ -0.72
SF3B3-212ENST00000568539 CEP85Q6P2H3 762 aa10.58□□□□□ -0.72
SF3B3-212ENST00000568539 C3orf67Q6ZVT6 689 aa10.58□□□□□ -0.72
SF3B3-212ENST00000568539 PAXIP1Q6ZW49 1069 aaPredicted RBP10.58□□□□□ -0.72
SF3B3-212ENST00000568539 TTLL11Q8NHH1 800 aa10.58□□□□□ -0.72
SF3B3-212ENST00000568539 BRIP1Q9BX63 1249 aa10.58□□□□□ -0.72
SF3B3-212ENST00000568539 SPON1Q9HCB6 807 aa10.58□□□□□ -0.72
SF3B3-212ENST00000568539 PCDHB15Q9Y5E8 787 aa10.58□□□□□ -0.72
SF3B3-212ENST00000568539 C10orf71Q711Q0 1435 aa10.58□□□□□ -0.72
SF3B3-212ENST00000568539 SF3B3Q15393 1217 aaKnown RBP10.57□□□□□ -0.72
SF3B3-212ENST00000568539 ERICH6BQ5W0A0 696 aa10.57□□□□□ -0.72
SF3B3-212ENST00000568539 LMBR1LQ6UX01 489 aa10.57□□□□□ -0.72
SF3B3-212ENST00000568539 RPAP2Q8IXW5 612 aaPredicted RBP10.57□□□□□ -0.72
SF3B3-212ENST00000568539 NLRP3Q96P20 1036 aa10.57□□□□□ -0.72
SF3B3-212ENST00000568539 AFDNP55196 1824 aaKnown RBP10.56□□□□□ -0.72
SF3B3-212ENST00000568539 ATP8B2P98198 1209 aa10.56□□□□□ -0.72
SF3B3-212ENST00000568539 CRY2Q49AN0 593 aa10.56□□□□□ -0.72
SF3B3-212ENST00000568539 SIRT2Q8IXJ6 389 aa10.56□□□□□ -0.72
SF3B3-212ENST00000568539 FAM212AQ96EL1 285 aa10.56□□□□□ -0.72
SF3B3-212ENST00000568539 RTL9Q8NET4 1388 aa10.55□□□□□ -0.72
SF3B3-212ENST00000568539 TNRC6CQ9HCJ0 1690 aaKnown RBP10.55□□□□□ -0.72
SF3B3-212ENST00000568539 PNMA6EA0A0J9YXQ4 647 aa10.55□□□□□ -0.72
SF3B3-212ENST00000568539 SRGAP3O43295 1099 aa10.55□□□□□ -0.72
SF3B3-212ENST00000568539 CHRM1P11229 460 aaPredicted RBP10.55□□□□□ -0.72
SF3B3-212ENST00000568539 PDE6BP35913 854 aa10.55□□□□□ -0.72
SF3B3-212ENST00000568539 FAM161AQ3B820 660 aa10.55□□□□□ -0.72
SF3B3-212ENST00000568539 CCDC152Q4G0S7 254 aa10.55□□□□□ -0.72
SF3B3-212ENST00000568539 RASEFQ8IZ41 740 aa10.55□□□□□ -0.72
SF3B3-212ENST00000568539 SSH3Q8TE77 659 aa10.55□□□□□ -0.72
SF3B3-212ENST00000568539 CCDC85AQ96PX6 553 aaPredicted RBP10.55□□□□□ -0.72
SF3B3-212ENST00000568539 GREM2Q9H772 168 aa10.55□□□□□ -0.72
SF3B3-212ENST00000568539 SRGNP10124 158 aa10.54□□□□□ -0.72
SF3B3-212ENST00000568539 RFX5P48382 616 aaPredicted RBP10.54□□□□□ -0.72
SF3B3-212ENST00000568539 DCAF8Q5TAQ9 597 aa10.54□□□□□ -0.72
SF3B3-212ENST00000568539 SPRYD3Q8NCJ5 442 aa10.54□□□□□ -0.72
SF3B3-212ENST00000568539 CHMP3Q9Y3E7 222 aa10.54□□□□□ -0.72
SF3B3-212ENST00000568539 DDX60Q8IY21 1712 aaKnown RBP10.53□□□□□ -0.72
SF3B3-212ENST00000568539 LAMB2P55268 1798 aa10.53□□□□□ -0.72
SF3B3-212ENST00000568539 ITGA6P23229 1130 aa10.53□□□□□ -0.72
SF3B3-212ENST00000568539 HOXA10P31260 410 aaPredicted RBP10.53□□□□□ -0.72
SF3B3-212ENST00000568539 IFIT5Q13325 482 aaKnown RBP10.53□□□□□ -0.72
SF3B3-212ENST00000568539 HDAC1Q13547 482 aaPredicted RBP10.53□□□□□ -0.72
SF3B3-212ENST00000568539 CCDC57Q2TAC2 916 aa10.53□□□□□ -0.72
SF3B3-212ENST00000568539 C2CD5Q86YS7 1000 aa10.53□□□□□ -0.72
SF3B3-212ENST00000568539 RPGRQ92834 1020 aaKnown RBP10.53□□□□□ -0.72
SF3B3-212ENST00000568539 SEC31BQ9NQW1 1179 aa10.53□□□□□ -0.72
SF3B3-212ENST00000568539 PDZRN3Q9UPQ7 1066 aa10.53□□□□□ -0.72
SF3B3-212ENST00000568539 CD2APQ9Y5K6 639 aa10.53□□□□□ -0.72
SF3B3-212ENST00000568539 ANKRD18BA2A2Z9 1011 aa10.52□□□□□ -0.73
SF3B3-212ENST00000568539 H0YIN7 160 aa10.52□□□□□ -0.73
SF3B3-212ENST00000568539 RIOK3O14730 519 aaKnown RBP10.52□□□□□ -0.73
SF3B3-212ENST00000568539 HMMRO75330 724 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms