RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 SLC4A2P04920 1241 aa12.24□□□□□ -0.45
SF3B3-211ENST00000568291 EPHX2P34913 555 aa12.24□□□□□ -0.45
SF3B3-211ENST00000568291 IL16Q14005 1332 aa12.24□□□□□ -0.45
SF3B3-211ENST00000568291 CCDC30Q5VVM6 783 aa12.24□□□□□ -0.45
SF3B3-211ENST00000568291 PPP1R42Q7Z4L9 355 aa12.24□□□□□ -0.45
SF3B3-211ENST00000568291 RPGRQ92834 1020 aaKnown RBP12.24□□□□□ -0.45
SF3B3-211ENST00000568291 FAM89AQ96GI7 184 aa12.24□□□□□ -0.45
SF3B3-211ENST00000568291 PSMD1Q99460 953 aa12.24□□□□□ -0.45
SF3B3-211ENST00000568291 MYD88Q99836 296 aa12.24□□□□□ -0.45
SF3B3-211ENST00000568291 THSD7BQ9C0I4 1608 aa12.23□□□□□ -0.45
SF3B3-211ENST00000568291 FZD9O00144 591 aa12.23□□□□□ -0.45
SF3B3-211ENST00000568291 VAMP4O75379 141 aa12.23□□□□□ -0.45
SF3B3-211ENST00000568291 GOLGA2Q08379 1002 aa12.23□□□□□ -0.45
SF3B3-211ENST00000568291 PARP10Q53GL7 1025 aa12.23□□□□□ -0.45
SF3B3-211ENST00000568291 CDCA7LQ96GN5 454 aa12.23□□□□□ -0.45
SF3B3-211ENST00000568291 CLEC11AQ9Y240 323 aa12.23□□□□□ -0.45
SF3B3-211ENST00000568291 TMEM88BA6NKF7 163 aa12.22□□□□□ -0.45
SF3B3-211ENST00000568291 HSP90AB3PQ58FF7 597 aa12.22□□□□□ -0.45
SF3B3-211ENST00000568291 CC2D2BQ6DHV5 1058 aa12.22□□□□□ -0.45
SF3B3-211ENST00000568291 GPC2Q8N158 579 aa12.22□□□□□ -0.45
SF3B3-211ENST00000568291 JDP2Q8WYK2 163 aa12.22□□□□□ -0.45
SF3B3-211ENST00000568291 ISCA1Q9BUE6 129 aa12.22□□□□□ -0.45
SF3B3-211ENST00000568291 STK31Q9BXU1 1019 aa12.22□□□□□ -0.45
SF3B3-211ENST00000568291 MAP3K2Q9Y2U5 619 aa12.22□□□□□ -0.45
SF3B3-211ENST00000568291 TAF1P21675 1872 aa12.21□□□□□ -0.45
SF3B3-211ENST00000568291 PI4KAP2A4QPH2 592 aa12.21□□□□□ -0.45
SF3B3-211ENST00000568291 CCER2I3L3R5 266 aa12.21□□□□□ -0.45
SF3B3-211ENST00000568291 PPEF1O14829 653 aaPredicted RBP12.21□□□□□ -0.45
SF3B3-211ENST00000568291 ITGBL1O95965 494 aaPredicted RBP12.21□□□□□ -0.45
SF3B3-211ENST00000568291 HOXA10P31260 410 aaPredicted RBP12.21□□□□□ -0.45
SF3B3-211ENST00000568291 EIF6P56537 245 aaKnown RBP12.21□□□□□ -0.45
SF3B3-211ENST00000568291 PNMA8AQ86V59 439 aaPredicted RBP12.21□□□□□ -0.45
SF3B3-211ENST00000568291 PI4KAP1Q8N8J0 262 aa12.21□□□□□ -0.45
SF3B3-211ENST00000568291 NLRP3Q96P20 1036 aa12.21□□□□□ -0.45
SF3B3-211ENST00000568291 LRRC37AA6NMS7 1700 aa12.2□□□□□ -0.46
SF3B3-211ENST00000568291 DDX60Q8IY21 1712 aaKnown RBP12.2□□□□□ -0.46
SF3B3-211ENST00000568291 ZNF521Q96K83 1311 aa12.2□□□□□ -0.46
SF3B3-211ENST00000568291 FOXN1O15353 648 aa12.2□□□□□ -0.46
SF3B3-211ENST00000568291 LMOD1P29536 600 aaPredicted RBP12.2□□□□□ -0.46
SF3B3-211ENST00000568291 SLC10A5Q5PT55 438 aa12.2□□□□□ -0.46
SF3B3-211ENST00000568291 MAP1SQ66K74 1059 aaPredicted RBP12.2□□□□□ -0.46
SF3B3-211ENST00000568291 LARGE2Q8N3Y3 721 aa12.2□□□□□ -0.46
SF3B3-211ENST00000568291 RBM17Q96I25 401 aaKnown RBP12.2□□□□□ -0.46
SF3B3-211ENST00000568291 CCDC85AQ96PX6 553 aaPredicted RBP12.2□□□□□ -0.46
SF3B3-211ENST00000568291 CRAMP1Q96RY5 1269 aa12.2□□□□□ -0.46
SF3B3-211ENST00000568291 MYH16Q9H6N6 1097 aa12.2□□□□□ -0.46
SF3B3-211ENST00000568291 GJA3Q9Y6H8 435 aa12.2□□□□□ -0.46
SF3B3-211ENST00000568291 SH3TC1Q8TE82 1336 aa12.19□□□□□ -0.46
SF3B3-211ENST00000568291 VEGFBP49765 207 aa12.19□□□□□ -0.46
SF3B3-211ENST00000568291 CWF19L2Q2TBE0 894 aaKnown RBP12.19□□□□□ -0.46
SF3B3-211ENST00000568291 AIDAQ96BJ3 306 aa12.19□□□□□ -0.46
SF3B3-211ENST00000568291 METTL22Q9BUU2 404 aaPredicted RBP12.19□□□□□ -0.46
SF3B3-211ENST00000568291 F6X3S4 739 aa12.18□□□□□ -0.46
SF3B3-211ENST00000568291 IRS4O14654 1257 aaPredicted RBP12.18□□□□□ -0.46
SF3B3-211ENST00000568291 IGKV5-2P06315 115 aa12.18□□□□□ -0.46
SF3B3-211ENST00000568291 FLIIQ13045 1269 aa12.18□□□□□ -0.46
SF3B3-211ENST00000568291 GRIPAP1Q4V328 841 aa12.18□□□□□ -0.46
SF3B3-211ENST00000568291 KSR2Q6VAB6 950 aa12.18□□□□□ -0.46
SF3B3-211ENST00000568291 NIM1KQ8IY84 436 aa12.18□□□□□ -0.46
SF3B3-211ENST00000568291 CNTROBQ8N137 903 aa12.18□□□□□ -0.46
SF3B3-211ENST00000568291 PPIP5K2O43314 1243 aa12.17□□□□□ -0.46
SF3B3-211ENST00000568291 DDX58O95786 925 aaKnown RBP12.17□□□□□ -0.46
SF3B3-211ENST00000568291 SCNN1DP51172 638 aa12.17□□□□□ -0.46
SF3B3-211ENST00000568291 FKBP5Q13451 457 aaPredicted RBP12.17□□□□□ -0.46
SF3B3-211ENST00000568291 ABT1Q9ULW3 272 aaKnown RBP12.17□□□□□ -0.46
SF3B3-211ENST00000568291 DUOX1Q9NRD9 1551 aa12.17□□□□□ -0.46
SF3B3-211ENST00000568291 ABCC4O15439 1325 aa12.16□□□□□ -0.46
SF3B3-211ENST00000568291 RASSF10A6NK89 507 aa12.16□□□□□ -0.46
SF3B3-211ENST00000568291 EPS15P42566 896 aa12.16□□□□□ -0.46
SF3B3-211ENST00000568291 CTCFP49711 727 aaPredicted RBP12.16□□□□□ -0.46
SF3B3-211ENST00000568291 SLFN5Q08AF3 891 aa12.16□□□□□ -0.46
SF3B3-211ENST00000568291 TRIM28Q13263 835 aaKnown RBP12.16□□□□□ -0.46
SF3B3-211ENST00000568291 AOC3Q16853 763 aa12.16□□□□□ -0.46
SF3B3-211ENST00000568291 BCL2L13Q9BXK5 485 aa12.16□□□□□ -0.46
SF3B3-211ENST00000568291 TMX4Q9H1E5 349 aaPredicted RBP12.16□□□□□ -0.46
SF3B3-211ENST00000568291 PRDM10Q9NQV6 1147 aa12.16□□□□□ -0.46
SF3B3-211ENST00000568291 SEC31BQ9NQW1 1179 aa12.16□□□□□ -0.46
SF3B3-211ENST00000568291 CWC25Q9NXE8 425 aaPredicted RBP12.16□□□□□ -0.46
SF3B3-211ENST00000568291 DEFB115Q30KQ5 88 aa12.15□□□□□ -0.46
SF3B3-211ENST00000568291 DDX46Q7L014 1031 aaKnown RBP12.15□□□□□ -0.46
SF3B3-211ENST00000568291 ZBTB38Q8NAP3 1195 aaPredicted RBP12.15□□□□□ -0.46
SF3B3-211ENST00000568291 CELF1Q92879 486 aaKnown RBP12.15□□□□□ -0.46
SF3B3-211ENST00000568291 ATP6V0A2Q9Y487 856 aa12.15□□□□□ -0.46
SF3B3-211ENST00000568291 NEURL1BA8MQ27 555 aa12.14□□□□□ -0.47
SF3B3-211ENST00000568291 CCDC191Q8NCU4 936 aa12.14□□□□□ -0.47
SF3B3-211ENST00000568291 CHMP4AQ9BY43 222 aa12.14□□□□□ -0.47
SF3B3-211ENST00000568291 WBP1LQ9NX94 342 aa12.14□□□□□ -0.47
SF3B3-211ENST00000568291 WDR33Q9C0J8 1336 aaKnown RBP12.13□□□□□ -0.47
SF3B3-211ENST00000568291 E9PSI1 815 aa12.13□□□□□ -0.47
SF3B3-211ENST00000568291 PCCAP05165 728 aaPredicted RBP12.13□□□□□ -0.47
SF3B3-211ENST00000568291 FMR1Q06787 632 aaKnown RBP eCLIP12.13□□□□□ -0.471e-6■■□□□ 14.3
SF3B3-211ENST00000568291 NEXNQ0ZGT2 675 aa12.13□□□□□ -0.47
SF3B3-211ENST00000568291 SLC4A10Q6U841 1118 aa12.13□□□□□ -0.47
SF3B3-211ENST00000568291 PAXIP1Q6ZW49 1069 aaPredicted RBP12.13□□□□□ -0.47
SF3B3-211ENST00000568291 USP50Q70EL3 339 aaPredicted RBP12.13□□□□□ -0.47
SF3B3-211ENST00000568291 SUPT20HQ8NEM7 779 aa12.13□□□□□ -0.47
SF3B3-211ENST00000568291 DNAAF4Q8WXU2 420 aa12.13□□□□□ -0.47
SF3B3-211ENST00000568291 GPRC5DQ9NZD1 345 aa12.13□□□□□ -0.47
SF3B3-211ENST00000568291 TRAF5O00463 557 aa12.12□□□□□ -0.47
SF3B3-211ENST00000568291 HSPA8P11142 646 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms