RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 CCDC152Q4G0S7 254 aa15.34■□□□□ 0.05
SF3B3-208ENST00000567250 DDX46Q7L014 1031 aaKnown RBP15.34■□□□□ 0.05
SF3B3-208ENST00000567250 SYNE4Q8N205 404 aa15.34■□□□□ 0.05
SF3B3-208ENST00000567250 PLA2G12BQ9BX93 195 aa15.34■□□□□ 0.05
SF3B3-208ENST00000567250 HDAC5Q9UQL6 1122 aa15.34■□□□□ 0.05
SF3B3-208ENST00000567250 CHD4Q14839 1912 aa15.34■□□□□ 0.05
SF3B3-208ENST00000567250 GOLGB1Q14789 3259 aaKnown RBP15.33■□□□□ 0.04
SF3B3-208ENST00000567250 GRIN3BO60391 1043 aa15.33■□□□□ 0.04
SF3B3-208ENST00000567250 HOXA10P31260 410 aaPredicted RBP15.33■□□□□ 0.04
SF3B3-208ENST00000567250 CTSWP56202 376 aa15.33■□□□□ 0.04
SF3B3-208ENST00000567250 SOGA3Q5TF21 947 aa15.33■□□□□ 0.04
SF3B3-208ENST00000567250 INTS3Q68E01 1043 aaKnown RBP15.33■□□□□ 0.04
SF3B3-208ENST00000567250 DZIP1LQ8IYY4 767 aaKnown RBP15.33■□□□□ 0.04
SF3B3-208ENST00000567250 CRAMP1Q96RY5 1269 aa15.33■□□□□ 0.04
SF3B3-208ENST00000567250 UTYO14607 1347 aa15.33■□□□□ 0.04
SF3B3-208ENST00000567250 FER1L6Q2WGJ9 1857 aa15.33■□□□□ 0.04
SF3B3-208ENST00000567250 TAF1P21675 1872 aa15.32■□□□□ 0.04
SF3B3-208ENST00000567250 CASP7P55210 303 aa15.32■□□□□ 0.04
SF3B3-208ENST00000567250 PRPF40BQ6NWY9 871 aaKnown RBP15.32■□□□□ 0.04
SF3B3-208ENST00000567250 CLUAP1Q96AJ1 413 aa15.32■□□□□ 0.04
SF3B3-208ENST00000567250 WWC3Q9ULE0 1092 aa15.32■□□□□ 0.04
SF3B3-208ENST00000567250 RTL9Q8NET4 1388 aa15.32■□□□□ 0.04
SF3B3-208ENST00000567250 C3orf67Q6ZVT6 689 aa15.31■□□□□ 0.04
SF3B3-208ENST00000567250 TMC4Q7Z404 712 aa15.31■□□□□ 0.04
SF3B3-208ENST00000567250 TMX4Q9H1E5 349 aaPredicted RBP15.31■□□□□ 0.04
SF3B3-208ENST00000567250 UBTFL1P0CB47 393 aaPredicted RBP15.3■□□□□ 0.04
SF3B3-208ENST00000567250 YBX3P16989 372 aaKnown RBP eCLIP15.3■□□□□ 0.04
SF3B3-208ENST00000567250 GRAPQ13588 217 aa15.3■□□□□ 0.04
SF3B3-208ENST00000567250 GRAPLQ8TC17 118 aaPredicted RBP15.3■□□□□ 0.04
SF3B3-208ENST00000567250 JARID2Q92833 1246 aaPredicted RBP15.3■□□□□ 0.04
SF3B3-208ENST00000567250 PPEF1O14829 653 aaPredicted RBP15.29■□□□□ 0.04
SF3B3-208ENST00000567250 GNAI3P08754 354 aa15.29■□□□□ 0.04
SF3B3-208ENST00000567250 NBPF7P0C2Y1 421 aaPredicted RBP15.29■□□□□ 0.04
SF3B3-208ENST00000567250 CDC5LQ99459 802 aaKnown RBP15.29■□□□□ 0.04
SF3B3-208ENST00000567250 GRIPAP1Q4V328 841 aa15.28■□□□□ 0.04
SF3B3-208ENST00000567250 CCDC93Q567U6 631 aa15.28■□□□□ 0.04
SF3B3-208ENST00000567250 CC2D2BQ6DHV5 1058 aa15.28■□□□□ 0.04
SF3B3-208ENST00000567250 ITPRIPQ8IWB1 547 aa15.28■□□□□ 0.04
SF3B3-208ENST00000567250 TMEM57Q8N5G2 664 aa15.28■□□□□ 0.04
SF3B3-208ENST00000567250 TTLL11Q8NHH1 800 aa15.28■□□□□ 0.04
SF3B3-208ENST00000567250 USP44Q9H0E7 712 aa15.28■□□□□ 0.04
SF3B3-208ENST00000567250 A0A1B0GUL6 1792 aa15.28■□□□□ 0.04
SF3B3-208ENST00000567250 TIAM2Q8IVF5 1701 aa15.28■□□□□ 0.04
SF3B3-208ENST00000567250 BBOX1O75936 387 aa15.27■□□□□ 0.04
SF3B3-208ENST00000567250 PDE3AQ14432 1141 aa15.27■□□□□ 0.04
SF3B3-208ENST00000567250 SUCLG2Q96I99 432 aa15.27■□□□□ 0.04
SF3B3-208ENST00000567250 CHMP4BQ9H444 224 aaKnown RBP15.27■□□□□ 0.04
SF3B3-208ENST00000567250 TNNQ9UQP3 1299 aa15.27■□□□□ 0.04
SF3B3-208ENST00000567250 CHMP3Q9Y3E7 222 aa15.27■□□□□ 0.04
SF3B3-208ENST00000567250 DICER1Q9UPY3 1922 aaKnown RBP15.27■□□□□ 0.03
SF3B3-208ENST00000567250 SBF1O95248 1867 aa15.27■□□□□ 0.03
SF3B3-208ENST00000567250 CCDC88AQ3V6T2 1871 aa15.27■□□□□ 0.03
SF3B3-208ENST00000567250 C21orf2O43822 256 aa15.26■□□□□ 0.03
SF3B3-208ENST00000567250 CSF1RP07333 972 aa15.26■□□□□ 0.03
SF3B3-208ENST00000567250 FAM161AQ3B820 660 aa15.26■□□□□ 0.03
SF3B3-208ENST00000567250 ANKRD18AQ8IVF6 992 aa15.26■□□□□ 0.03
SF3B3-208ENST00000567250 CCDC85AQ96PX6 553 aaPredicted RBP15.26■□□□□ 0.03
SF3B3-208ENST00000567250 GREM2Q9H772 168 aa15.26■□□□□ 0.03
SF3B3-208ENST00000567250 LTBP1Q14766 1721 aa15.26■□□□□ 0.03
SF3B3-208ENST00000567250 COL4A1P02462 1669 aa15.25■□□□□ 0.03
SF3B3-208ENST00000567250 ANKRD18BA2A2Z9 1011 aa15.25■□□□□ 0.03
SF3B3-208ENST00000567250 IGHMBP2P38935 993 aaKnown RBP15.25■□□□□ 0.03
SF3B3-208ENST00000567250 RRP1P56182 461 aaKnown RBP15.25■□□□□ 0.03
SF3B3-208ENST00000567250 FOXO4P98177 505 aa15.25■□□□□ 0.03
SF3B3-208ENST00000567250 IFIT5Q13325 482 aaKnown RBP15.25■□□□□ 0.03
SF3B3-208ENST00000567250 CCDC57Q2TAC2 916 aa15.25■□□□□ 0.03
SF3B3-208ENST00000567250 LMBR1LQ6UX01 489 aa15.25■□□□□ 0.03
SF3B3-208ENST00000567250 RTKN2Q8IZC4 609 aa15.25■□□□□ 0.03
SF3B3-208ENST00000567250 MEIS3Q99687 375 aa15.25■□□□□ 0.03
SF3B3-208ENST00000567250 BICC1Q9H694 974 aaKnown RBP15.25■□□□□ 0.03
SF3B3-208ENST00000567250 DDX19BQ9UMR2 479 aa15.25■□□□□ 0.03
SF3B3-208ENST00000567250 ATP6V0A2Q9Y487 856 aa15.25■□□□□ 0.03
SF3B3-208ENST00000567250 LTBP3Q9NS15 1303 aa15.24■□□□□ 0.03
SF3B3-208ENST00000567250 RLBP1P12271 317 aa15.24■□□□□ 0.03
SF3B3-208ENST00000567250 ITGA6P23229 1130 aa15.24■□□□□ 0.03
SF3B3-208ENST00000567250 RPS8P62241 208 aaKnown RBP15.24■□□□□ 0.03
SF3B3-208ENST00000567250 MVPQ14764 893 aaKnown RBP15.24■□□□□ 0.03
SF3B3-208ENST00000567250 RABL6Q3YEC7 729 aaPredicted RBP15.24■□□□□ 0.03
SF3B3-208ENST00000567250 TAF7LQ5H9L4 462 aa15.24■□□□□ 0.03
SF3B3-208ENST00000567250 ARHGAP27Q6ZUM4 889 aa15.24■□□□□ 0.03
SF3B3-208ENST00000567250 CELF1Q92879 486 aaKnown RBP15.24■□□□□ 0.03
SF3B3-208ENST00000567250 TAOK3Q9H2K8 898 aa15.24■□□□□ 0.03
SF3B3-208ENST00000567250 ZNF219Q9P2Y4 722 aaPredicted RBP15.24■□□□□ 0.03
SF3B3-208ENST00000567250 PLIN1O60240 522 aa15.23■□□□□ 0.03
SF3B3-208ENST00000567250 GNAI2P04899 355 aa15.23■□□□□ 0.03
SF3B3-208ENST00000567250 EPHA10Q5JZY3 1008 aa15.23■□□□□ 0.03
SF3B3-208ENST00000567250 SP8Q8IXZ3 490 aa15.23■□□□□ 0.03
SF3B3-208ENST00000567250 PANK1Q8TE04 598 aa15.23■□□□□ 0.03
SF3B3-208ENST00000567250 MPHOSPH8Q99549 860 aa15.23■□□□□ 0.03
SF3B3-208ENST00000567250 SEC31BQ9NQW1 1179 aa15.23■□□□□ 0.03
SF3B3-208ENST00000567250 LRRFIP2Q9Y608 721 aaKnown RBP15.23■□□□□ 0.03
SF3B3-208ENST00000567250 SNED1Q8TER0 1413 aa15.23■□□□□ 0.03
SF3B3-208ENST00000567250 C7orf43Q8WVR3 580 aa15.22■□□□□ 0.03
SF3B3-208ENST00000567250 KAZALD1Q96I82 304 aa15.22■□□□□ 0.03
SF3B3-208ENST00000567250 DUOX1Q9NRD9 1551 aa15.21■□□□□ 0.03
SF3B3-208ENST00000567250 FKBP4Q02790 459 aaKnown RBP eCLIP15.21■□□□□ 0.03
SF3B3-208ENST00000567250 ANKRD44Q8N8A2 993 aa15.21■□□□□ 0.03
SF3B3-208ENST00000567250 SUPT20HQ8NEM7 779 aa15.21■□□□□ 0.03
SF3B3-208ENST00000567250 PSMD1Q99460 953 aa15.21■□□□□ 0.03
SF3B3-208ENST00000567250 BSDC1Q9NW68 430 aaPredicted RBP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms