RNA–Protein interactions for RNA: ENST00000566779.1

GTF3C1-206, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-206ENST00000566779 WWC1Q8IX03 1113 aa13.04□□□□□ -0.32
GTF3C1-206ENST00000566779 SYNE4Q8N205 404 aa13.04□□□□□ -0.32
GTF3C1-206ENST00000566779 TSPYL6Q8N831 410 aa13.04□□□□□ -0.32
GTF3C1-206ENST00000566779 PLBD2Q8NHP8 589 aa13.04□□□□□ -0.32
GTF3C1-206ENST00000566779 SH3TC1Q8TE82 1336 aa13.04□□□□□ -0.32
GTF3C1-206ENST00000566779 ZC3H4Q9UPT8 1303 aaKnown RBP13.04□□□□□ -0.32
GTF3C1-206ENST00000566779 FKBP4Q02790 459 aaKnown RBP eCLIP13.03□□□□□ -0.32
GTF3C1-206ENST00000566779 CRY2Q49AN0 593 aa13.03□□□□□ -0.32
GTF3C1-206ENST00000566779 MYD88Q99836 296 aa13.03□□□□□ -0.32
GTF3C1-206ENST00000566779 STK31Q9BXU1 1019 aa13.03□□□□□ -0.32
GTF3C1-206ENST00000566779 LTBP3Q9NS15 1303 aa13.03□□□□□ -0.32
GTF3C1-206ENST00000566779 KLRG2A4D1S0 409 aaPredicted RBP13.02□□□□□ -0.33
GTF3C1-206ENST00000566779 GLTPD2A6NH11 291 aa13.02□□□□□ -0.33
GTF3C1-206ENST00000566779 GTPBP6O43824 516 aaPredicted RBP13.02□□□□□ -0.33
GTF3C1-206ENST00000566779 TOMM70O94826 608 aa13.02□□□□□ -0.33
GTF3C1-206ENST00000566779 CCDC30Q5VVM6 783 aa13.02□□□□□ -0.33
GTF3C1-206ENST00000566779 DPY19L2Q6NUT2 758 aa13.02□□□□□ -0.33
GTF3C1-206ENST00000566779 RTKN2Q8IZC4 609 aa13.02□□□□□ -0.33
GTF3C1-206ENST00000566779 FAM89AQ96GI7 184 aa13.02□□□□□ -0.33
GTF3C1-206ENST00000566779 TMX4Q9H1E5 349 aaPredicted RBP13.02□□□□□ -0.33
GTF3C1-206ENST00000566779 ABCC4O15439 1325 aa13.02□□□□□ -0.33
GTF3C1-206ENST00000566779 SCN4AP35499 1836 aa13.02□□□□□ -0.33
GTF3C1-206ENST00000566779 DDNO94850 711 aaPredicted RBP13.01□□□□□ -0.33
GTF3C1-206ENST00000566779 HSPA6P17066 643 aa13.01□□□□□ -0.33
GTF3C1-206ENST00000566779 TWISTNBQ3B726 338 aaPredicted RBP13.01□□□□□ -0.33
GTF3C1-206ENST00000566779 C7orf43Q8WVR3 580 aa13.01□□□□□ -0.33
GTF3C1-206ENST00000566779 ZNF541Q9H0D2 1346 aa13.01□□□□□ -0.33
GTF3C1-206ENST00000566779 FANCIQ9NVI1 1328 aa13.01□□□□□ -0.33
GTF3C1-206ENST00000566779 RNF123Q5XPI4 1314 aa13□□□□□ -0.33
GTF3C1-206ENST00000566779 IARSP41252 1262 aaKnown RBP13□□□□□ -0.33
GTF3C1-206ENST00000566779 CCDC27Q2M243 656 aa13□□□□□ -0.33
GTF3C1-206ENST00000566779 DDX46Q7L014 1031 aaKnown RBP13□□□□□ -0.33
GTF3C1-206ENST00000566779 JARID2Q92833 1246 aaPredicted RBP13□□□□□ -0.33
GTF3C1-206ENST00000566779 LRRC37AA6NMS7 1700 aa12.99□□□□□ -0.33
GTF3C1-206ENST00000566779 COL4A1P02462 1669 aa12.99□□□□□ -0.33
GTF3C1-206ENST00000566779 COL4A5P29400 1685 aa12.99□□□□□ -0.33
GTF3C1-206ENST00000566779 DDX58O95786 925 aaKnown RBP12.99□□□□□ -0.33
GTF3C1-206ENST00000566779 VEGFAP15692 232 aaPredicted RBP12.99□□□□□ -0.33
GTF3C1-206ENST00000566779 HOXA10P31260 410 aaPredicted RBP12.99□□□□□ -0.33
GTF3C1-206ENST00000566779 LARGE2Q8N3Y3 721 aa12.99□□□□□ -0.33
GTF3C1-206ENST00000566779 RBM46Q8TBY0 533 aaKnown RBP12.99□□□□□ -0.33
GTF3C1-206ENST00000566779 CCDC85AQ96PX6 553 aaPredicted RBP12.99□□□□□ -0.33
GTF3C1-206ENST00000566779 CRAMP1Q96RY5 1269 aa12.99□□□□□ -0.33
GTF3C1-206ENST00000566779 PYGBP11216 843 aa12.98□□□□□ -0.33
GTF3C1-206ENST00000566779 TPRNQ4KMQ1 711 aa12.98□□□□□ -0.33
GTF3C1-206ENST00000566779 JDP2Q8WYK2 163 aa12.98□□□□□ -0.33
GTF3C1-206ENST00000566779 ISCA1Q9BUE6 129 aa12.98□□□□□ -0.33
GTF3C1-206ENST00000566779 MAP3K2Q9Y2U5 619 aa12.98□□□□□ -0.33
GTF3C1-206ENST00000566779 GJA3Q9Y6H8 435 aa12.98□□□□□ -0.33
GTF3C1-206ENST00000566779 IL16Q14005 1332 aa12.97□□□□□ -0.33
GTF3C1-206ENST00000566779 IRS4O14654 1257 aaPredicted RBP12.97□□□□□ -0.33
GTF3C1-206ENST00000566779 PPIP5K2O43314 1243 aa12.97□□□□□ -0.33
GTF3C1-206ENST00000566779 HTRA3P83110 453 aa12.97□□□□□ -0.33
GTF3C1-206ENST00000566779 EXOSC9Q06265 439 aaKnown RBP12.97□□□□□ -0.33
GTF3C1-206ENST00000566779 SLC10A5Q5PT55 438 aa12.97□□□□□ -0.33
GTF3C1-206ENST00000566779 SMC1BQ8NDV3 1235 aa12.97□□□□□ -0.33
GTF3C1-206ENST00000566779 CHMP4AQ9BY43 222 aa12.97□□□□□ -0.33
GTF3C1-206ENST00000566779 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.96□□□□□ -0.33
GTF3C1-206ENST00000566779 GRAPQ13588 217 aa12.96□□□□□ -0.33
GTF3C1-206ENST00000566779 AOC3Q16853 763 aa12.96□□□□□ -0.33
GTF3C1-206ENST00000566779 EAPPQ56P03 285 aaPredicted RBP12.96□□□□□ -0.33
GTF3C1-206ENST00000566779 CC2D2BQ6DHV5 1058 aa12.96□□□□□ -0.33
GTF3C1-206ENST00000566779 DPP8Q6V1X1 898 aaPredicted RBP12.96□□□□□ -0.33
GTF3C1-206ENST00000566779 G2E3Q7L622 706 aa12.96□□□□□ -0.33
GTF3C1-206ENST00000566779 NIM1KQ8IY84 436 aa12.96□□□□□ -0.33
GTF3C1-206ENST00000566779 GRAPLQ8TC17 118 aaPredicted RBP12.96□□□□□ -0.33
GTF3C1-206ENST00000566779 ZFP91Q96JP5 570 aaPredicted RBP12.96□□□□□ -0.33
GTF3C1-206ENST00000566779 CWC25Q9NXE8 425 aaPredicted RBP12.96□□□□□ -0.33
GTF3C1-206ENST00000566779 SNED1Q8TER0 1413 aa12.96□□□□□ -0.34
GTF3C1-206ENST00000566779 PI4KAP2A4QPH2 592 aa12.95□□□□□ -0.34
GTF3C1-206ENST00000566779 APLP1P51693 650 aa12.95□□□□□ -0.34
GTF3C1-206ENST00000566779 EIF6P56537 245 aaKnown RBP12.95□□□□□ -0.34
GTF3C1-206ENST00000566779 NEXNQ0ZGT2 675 aa12.95□□□□□ -0.34
GTF3C1-206ENST00000566779 FKBP5Q13451 457 aaPredicted RBP12.95□□□□□ -0.34
GTF3C1-206ENST00000566779 PI4KAP1Q8N8J0 262 aa12.95□□□□□ -0.34
GTF3C1-206ENST00000566779 PSMD1Q99460 953 aa12.95□□□□□ -0.34
GTF3C1-206ENST00000566779 METTL22Q9BUU2 404 aaPredicted RBP12.95□□□□□ -0.34
GTF3C1-206ENST00000566779 ATP6V0A2Q9Y487 856 aa12.95□□□□□ -0.34
GTF3C1-206ENST00000566779 DUOX1Q9NRD9 1551 aa12.94□□□□□ -0.34
GTF3C1-206ENST00000566779 CWF19L2Q2TBE0 894 aaKnown RBP12.94□□□□□ -0.34
GTF3C1-206ENST00000566779 KSR2Q6VAB6 950 aa12.94□□□□□ -0.34
GTF3C1-206ENST00000566779 WDR63Q8IWG1 891 aa12.94□□□□□ -0.34
GTF3C1-206ENST00000566779 MPNDQ8N594 471 aa12.94□□□□□ -0.34
GTF3C1-206ENST00000566779 ZBTB38Q8NAP3 1195 aaPredicted RBP12.94□□□□□ -0.34
GTF3C1-206ENST00000566779 CELF1Q92879 486 aaKnown RBP12.94□□□□□ -0.34
GTF3C1-206ENST00000566779 MYH16Q9H6N6 1097 aa12.94□□□□□ -0.34
GTF3C1-206ENST00000566779 STK24Q9Y6E0 443 aa12.94□□□□□ -0.34
GTF3C1-206ENST00000566779 LTBP1Q14766 1721 aa12.93□□□□□ -0.34
GTF3C1-206ENST00000566779 IQCA1LA6NCM1 817 aa12.93□□□□□ -0.34
GTF3C1-206ENST00000566779 POTECB2RU33 542 aa12.93□□□□□ -0.34
GTF3C1-206ENST00000566779 BBOX1O75936 387 aa12.93□□□□□ -0.34
GTF3C1-206ENST00000566779 POTEIP0CG38 1075 aa12.93□□□□□ -0.34
GTF3C1-206ENST00000566779 POTEJP0CG39 1038 aa12.93□□□□□ -0.34
GTF3C1-206ENST00000566779 FSTL1Q12841 308 aa12.93□□□□□ -0.34
GTF3C1-206ENST00000566779 FLIIQ13045 1269 aa12.93□□□□□ -0.34
GTF3C1-206ENST00000566779 SUPT20HQ8NEM7 779 aa12.93□□□□□ -0.34
GTF3C1-206ENST00000566779 PCCAP05165 728 aaPredicted RBP12.92□□□□□ -0.34
GTF3C1-206ENST00000566779 LMOD1P29536 600 aaPredicted RBP12.92□□□□□ -0.34
GTF3C1-206ENST00000566779 UBE3BQ7Z3V4 1068 aa12.92□□□□□ -0.34
GTF3C1-206ENST00000566779 SP8Q8IXZ3 490 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms