RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 EFCAB2Q5VUJ9 269 aa8.63□□□□□ -1.03
VPS35-204ENST00000563884 LINC00114Q6XXX2 140 aa8.63□□□□□ -1.03
VPS35-204ENST00000563884 CLUAP1Q96AJ1 413 aa8.63□□□□□ -1.03
VPS35-204ENST00000563884 SUV39H2Q9H5I1 410 aa8.63□□□□□ -1.03
VPS35-204ENST00000563884 SCHIP1Q9P0W5 487 aaPredicted RBP8.63□□□□□ -1.03
VPS35-204ENST00000563884 ARHGAP5Q13017 1502 aa8.63□□□□□ -1.03
VPS35-204ENST00000563884 XIRP1Q702N8 1843 aaKnown RBP8.63□□□□□ -1.03
VPS35-204ENST00000563884 ZMYM3Q14202 1370 aa8.62□□□□□ -1.03
VPS35-204ENST00000563884 POM121CA8CG34 1229 aa8.62□□□□□ -1.03
VPS35-204ENST00000563884 GNB5O14775 395 aa8.62□□□□□ -1.03
VPS35-204ENST00000563884 FAM157BP0CG42 384 aa8.62□□□□□ -1.03
VPS35-204ENST00000563884 TXLNAP40222 546 aa8.62□□□□□ -1.03
VPS35-204ENST00000563884 ADAMTS19Q8TE59 1207 aa8.62□□□□□ -1.03
VPS35-204ENST00000563884 ZNF232Q9UNY5 417 aa8.62□□□□□ -1.03
VPS35-204ENST00000563884 PHLPP1O60346 1717 aa8.62□□□□□ -1.03
VPS35-204ENST00000563884 CDK12Q9NYV4 1490 aaPredicted RBP8.62□□□□□ -1.03
VPS35-204ENST00000563884 ROBO1Q9Y6N7 1651 aa8.62□□□□□ -1.03
VPS35-204ENST00000563884 HOXB4P17483 251 aaPredicted RBP8.61□□□□□ -1.03
VPS35-204ENST00000563884 PCBP4P57723 403 aaKnown RBP8.61□□□□□ -1.03
VPS35-204ENST00000563884 CHSY3Q70JA7 882 aa8.61□□□□□ -1.03
VPS35-204ENST00000563884 SLC9A9Q8IVB4 645 aa8.61□□□□□ -1.03
VPS35-204ENST00000563884 L3MBTL2Q969R5 705 aa8.61□□□□□ -1.03
VPS35-204ENST00000563884 NEUROD4Q9HD90 331 aa8.61□□□□□ -1.03
VPS35-204ENST00000563884 AVENQ9NQS1 362 aaPredicted RBP8.61□□□□□ -1.03
VPS35-204ENST00000563884 MARK1Q9P0L2 795 aa8.61□□□□□ -1.03
VPS35-204ENST00000563884 HCN2Q9UL51 889 aa8.61□□□□□ -1.03
VPS35-204ENST00000563884 MED14O60244 1454 aa8.6□□□□□ -1.03
VPS35-204ENST00000563884 LRRC9Q6ZRR7 1453 aa8.6□□□□□ -1.03
VPS35-204ENST00000563884 ADAM23O75077 832 aa8.6□□□□□ -1.03
VPS35-204ENST00000563884 NOS2P35228 1153 aa8.6□□□□□ -1.03
VPS35-204ENST00000563884 DGKGP49619 791 aa8.6□□□□□ -1.03
VPS35-204ENST00000563884 TEAD4Q15561 434 aa8.6□□□□□ -1.03
VPS35-204ENST00000563884 TBCELQ5QJ74 424 aa8.6□□□□□ -1.03
VPS35-204ENST00000563884 SAMD5Q5TGI4 173 aa8.6□□□□□ -1.03
VPS35-204ENST00000563884 PROSER2Q86WR7 435 aaPredicted RBP8.6□□□□□ -1.03
VPS35-204ENST00000563884 TRIM50Q86XT4 487 aa8.6□□□□□ -1.03
VPS35-204ENST00000563884 TNS4Q8IZW8 715 aa8.6□□□□□ -1.03
VPS35-204ENST00000563884 ZDHHC1Q8WTX9 485 aa8.6□□□□□ -1.03
VPS35-204ENST00000563884 KLF15Q9UIH9 416 aa8.6□□□□□ -1.03
VPS35-204ENST00000563884 LRRC69Q6ZNQ3 347 aa8.59□□□□□ -1.03
VPS35-204ENST00000563884 FCHSD1Q86WN1 690 aa8.59□□□□□ -1.03
VPS35-204ENST00000563884 TPCN2Q8NHX9 752 aa8.59□□□□□ -1.03
VPS35-204ENST00000563884 STRN4Q9NRL3 753 aa8.59□□□□□ -1.03
VPS35-204ENST00000563884 NOP53Q9NZM5 478 aaKnown RBP8.59□□□□□ -1.03
VPS35-204ENST00000563884 NPHP4O75161 1426 aaPredicted RBP8.59□□□□□ -1.03
VPS35-204ENST00000563884 FAM135BQ49AJ0 1406 aa8.59□□□□□ -1.03
VPS35-204ENST00000563884 CDC42BPBQ9Y5S2 1711 aa8.59□□□□□ -1.03
VPS35-204ENST00000563884 ABCC1P33527 1531 aa8.59□□□□□ -1.03
VPS35-204ENST00000563884 LRP5O75197 1615 aa8.58□□□□□ -1.04
VPS35-204ENST00000563884 BAG6P46379 1132 aa8.58□□□□□ -1.04
VPS35-204ENST00000563884 ATP1A2P50993 1020 aa8.58□□□□□ -1.04
VPS35-204ENST00000563884 LAMC2Q13753 1193 aa8.58□□□□□ -1.04
VPS35-204ENST00000563884 ZNF468Q5VIY5 522 aaPredicted RBP8.58□□□□□ -1.04
VPS35-204ENST00000563884 ZNF772Q68DY9 489 aaPredicted RBP8.58□□□□□ -1.04
VPS35-204ENST00000563884 PREX2Q70Z35 1606 aa8.58□□□□□ -1.04
VPS35-204ENST00000563884 ADGBQ8N7X0 1667 aa8.57□□□□□ -1.04
VPS35-204ENST00000563884 SERTM1A2A2V5 107 aa8.57□□□□□ -1.04
VPS35-204ENST00000563884 EPHA4P54764 986 aa8.57□□□□□ -1.04
VPS35-204ENST00000563884 HDGFL1Q5TGJ6 251 aa8.57□□□□□ -1.04
VPS35-204ENST00000563884 CCDC102BQ68D86 513 aa8.57□□□□□ -1.04
VPS35-204ENST00000563884 ANKLE2Q86XL3 938 aa8.57□□□□□ -1.04
VPS35-204ENST00000563884 ZC3H13Q5T200 1668 aaKnown RBP8.56□□□□□ -1.04
VPS35-204ENST00000563884 FAM135AQ9P2D6 1515 aa8.56□□□□□ -1.04
VPS35-204ENST00000563884 USP17L3A6NCW0 530 aa8.56□□□□□ -1.04
VPS35-204ENST00000563884 USP17L4A6NCW7 530 aa8.56□□□□□ -1.04
VPS35-204ENST00000563884 EML1O00423 815 aa8.56□□□□□ -1.04
VPS35-204ENST00000563884 EFSO43281 561 aa8.56□□□□□ -1.04
VPS35-204ENST00000563884 USP17L2Q6R6M4 530 aa8.56□□□□□ -1.04
VPS35-204ENST00000563884 USP17L1Q7RTZ2 530 aa8.56□□□□□ -1.04
VPS35-204ENST00000563884 CHMP3Q9Y3E7 222 aa8.56□□□□□ -1.04
VPS35-204ENST00000563884 PLXNC1O60486 1568 aa8.56□□□□□ -1.04
VPS35-204ENST00000563884 KDM5DQ9BY66 1539 aa8.55□□□□□ -1.04
VPS35-204ENST00000563884 K7ELQ4 463 aaPredicted RBP8.55□□□□□ -1.04
VPS35-204ENST00000563884 SH3PXD2AQ5TCZ1 1133 aa8.55□□□□□ -1.04
VPS35-204ENST00000563884 SYT9Q86SS6 491 aa8.55□□□□□ -1.04
VPS35-204ENST00000563884 PLEKHM2Q8IWE5 1019 aa8.55□□□□□ -1.04
VPS35-204ENST00000563884 RHPN1Q8TCX5 695 aa8.55□□□□□ -1.04
VPS35-204ENST00000563884 UCN2Q96RP3 112 aa8.55□□□□□ -1.04
VPS35-204ENST00000563884 KIAA1024Q9UPX6 916 aa8.55□□□□□ -1.04
VPS35-204ENST00000563884 SHPRHQ149N8 1683 aa8.55□□□□□ -1.04
VPS35-204ENST00000563884 UGGT1Q9NYU2 1555 aa8.54□□□□□ -1.04
VPS35-204ENST00000563884 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.54□□□□□ -1.04
VPS35-204ENST00000563884 JCADQ9P266 1359 aa8.54□□□□□ -1.04
VPS35-204ENST00000563884 C1QTNF9BB2RNN3 333 aa8.54□□□□□ -1.04
VPS35-204ENST00000563884 ZBTB7BO15156 539 aaPredicted RBP8.54□□□□□ -1.04
VPS35-204ENST00000563884 ALAS2P22557 587 aa8.54□□□□□ -1.04
VPS35-204ENST00000563884 CLDN10P78369 228 aa8.54□□□□□ -1.04
VPS35-204ENST00000563884 AFAP1Q8N556 730 aa8.54□□□□□ -1.04
VPS35-204ENST00000563884 GPC6Q9Y625 555 aaPredicted RBP8.54□□□□□ -1.04
VPS35-204ENST00000563884 NLRP1Q9C000 1473 aa8.53□□□□□ -1.04
VPS35-204ENST00000563884 ELOA3CA0A087WX78 387 aaPredicted RBP8.53□□□□□ -1.04
VPS35-204ENST00000563884 ELOA3DA6NLF2 546 aaPredicted RBP8.53□□□□□ -1.04
VPS35-204ENST00000563884 ATP9BO43861 1147 aa8.53□□□□□ -1.04
VPS35-204ENST00000563884 FURINP09958 794 aa8.53□□□□□ -1.04
VPS35-204ENST00000563884 PSMA6P60900 246 aaKnown RBP8.53□□□□□ -1.04
VPS35-204ENST00000563884 ELOA3BQ3SY89 546 aa8.53□□□□□ -1.04
VPS35-204ENST00000563884 MEX3CQ5U5Q3 659 aaKnown RBP8.53□□□□□ -1.04
VPS35-204ENST00000563884 OGFOD1Q8N543 542 aa8.53□□□□□ -1.04
VPS35-204ENST00000563884 ELOA3Q8NG57 546 aa8.53□□□□□ -1.04
VPS35-204ENST00000563884 TSPAN10Q9H1Z9 355 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms