RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 GABPB1Q06547 395 aaPredicted RBP12.26□□□□□ -0.45
RNF40-204ENST00000563683 CREB3L3Q68CJ9 461 aa12.26□□□□□ -0.45
RNF40-204ENST00000563683 ANKRD26Q9UPS8 1709 aa12.26□□□□□ -0.45
RNF40-204ENST00000563683 PTPRMP28827 1452 aa12.26□□□□□ -0.45
RNF40-204ENST00000563683 F13A1P00488 732 aa12.26□□□□□ -0.45
RNF40-204ENST00000563683 FAM173BQ6P4H8 233 aa12.26□□□□□ -0.45
RNF40-204ENST00000563683 BABAM1Q9NWV8 329 aa12.26□□□□□ -0.45
RNF40-204ENST00000563683 CWC25Q9NXE8 425 aaPredicted RBP12.26□□□□□ -0.45
RNF40-204ENST00000563683 PRAMEF22A3QJZ6 481 aa12.26□□□□□ -0.45
RNF40-204ENST00000563683 U2AF2P26368 475 aaKnown RBP eCLIP12.26□□□□□ -0.45
RNF40-204ENST00000563683 TFCP2Q12800 502 aa12.26□□□□□ -0.45
RNF40-204ENST00000563683 PROSER3Q2NL68 480 aa12.26□□□□□ -0.45
RNF40-204ENST00000563683 FILIP1Q7Z7B0 1213 aa12.26□□□□□ -0.45
RNF40-204ENST00000563683 EDC3Q96F86 508 aaKnown RBP12.26□□□□□ -0.45
RNF40-204ENST00000563683 C19orf44Q9H6X5 657 aa12.26□□□□□ -0.45
RNF40-204ENST00000563683 SAFBQ15424 915 aaKnown RBP eCLIP12.25□□□□□ -0.45
RNF40-204ENST00000563683 MPHOSPH8Q99549 860 aa12.25□□□□□ -0.45
RNF40-204ENST00000563683 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.25□□□□□ -0.452e-6■□□□□ 10.9
RNF40-204ENST00000563683 GIGYF1O75420 1035 aaPredicted RBP12.25□□□□□ -0.45
RNF40-204ENST00000563683 IFIT5Q13325 482 aaKnown RBP12.25□□□□□ -0.45
RNF40-204ENST00000563683 CGNQ9P2M7 1197 aaKnown RBP12.25□□□□□ -0.45
RNF40-204ENST00000563683 ARHGEF28Q8N1W1 1705 aaKnown RBP12.25□□□□□ -0.45
RNF40-204ENST00000563683 PES1O00541 588 aaKnown RBP12.25□□□□□ -0.45
RNF40-204ENST00000563683 CDK11BP21127 795 aaKnown RBP12.25□□□□□ -0.45
RNF40-204ENST00000563683 BEND3Q5T5X7 828 aa12.25□□□□□ -0.45
RNF40-204ENST00000563683 ZNF496Q96IT1 587 aaPredicted RBP12.25□□□□□ -0.45
RNF40-204ENST00000563683 CTNNA3Q9UI47 895 aa12.25□□□□□ -0.45
RNF40-204ENST00000563683 MTMR7Q9Y216 660 aa12.25□□□□□ -0.45
RNF40-204ENST00000563683 NEXMIFQ5QGS0 1516 aa12.25□□□□□ -0.45
RNF40-204ENST00000563683 ARHGEF40Q8TER5 1519 aa12.25□□□□□ -0.45
RNF40-204ENST00000563683 STARD3NLO95772 234 aa12.24□□□□□ -0.45
RNF40-204ENST00000563683 TIMM10P62072 90 aa12.24□□□□□ -0.45
RNF40-204ENST00000563683 TPD52L1Q16890 204 aaPredicted RBP12.24□□□□□ -0.45
RNF40-204ENST00000563683 IMMTQ16891 758 aaKnown RBP12.24□□□□□ -0.45
RNF40-204ENST00000563683 CHST3Q7LGC8 479 aa12.24□□□□□ -0.45
RNF40-204ENST00000563683 HOMER1Q86YM7 354 aa12.24□□□□□ -0.45
RNF40-204ENST00000563683 CADPS2Q86UW7 1296 aa12.24□□□□□ -0.45
RNF40-204ENST00000563683 PLEKHG1Q9ULL1 1385 aa12.24□□□□□ -0.45
RNF40-204ENST00000563683 SMC2O95347 1197 aa12.24□□□□□ -0.45
RNF40-204ENST00000563683 HOXB7P09629 217 aa12.24□□□□□ -0.45
RNF40-204ENST00000563683 HSPA4P34932 840 aa12.24□□□□□ -0.45
RNF40-204ENST00000563683 NAT10Q9H0A0 1025 aaKnown RBP12.24□□□□□ -0.45
RNF40-204ENST00000563683 CPSF1Q10570 1443 aaKnown RBP12.24□□□□□ -0.45
RNF40-204ENST00000563683 CCDC171Q6TFL3 1326 aa12.24□□□□□ -0.45
RNF40-204ENST00000563683 LDHAL6AQ6ZMR3 332 aa12.23□□□□□ -0.45
RNF40-204ENST00000563683 CCDC129Q6ZRS4 1044 aa12.23□□□□□ -0.45
RNF40-204ENST00000563683 CCDC82Q8N4S0 544 aa12.23□□□□□ -0.45
RNF40-204ENST00000563683 BBXQ8WY36 941 aaPredicted RBP12.23□□□□□ -0.45
RNF40-204ENST00000563683 IL17RAQ96F46 866 aa12.23□□□□□ -0.45
RNF40-204ENST00000563683 RAD50Q92878 1312 aa12.23□□□□□ -0.45
RNF40-204ENST00000563683 ZCRB1Q8TBF4 217 aaKnown RBP12.23□□□□□ -0.45
RNF40-204ENST00000563683 SETD1BQ9UPS6 1966 aaKnown RBP12.23□□□□□ -0.45
RNF40-204ENST00000563683 CCDC66A2RUB6 948 aa12.23□□□□□ -0.45
RNF40-204ENST00000563683 SMTNL1A8MU46 457 aa12.23□□□□□ -0.45
RNF40-204ENST00000563683 Q6ZUG5 572 aa12.23□□□□□ -0.45
RNF40-204ENST00000563683 PYCARDQ9ULZ3 195 aa12.23□□□□□ -0.45
RNF40-204ENST00000563683 PAXBP1Q9Y5B6 917 aa12.23□□□□□ -0.45
RNF40-204ENST00000563683 USP16Q9Y5T5 823 aa12.23□□□□□ -0.45
RNF40-204ENST00000563683 KNDC1Q76NI1 1749 aa12.22□□□□□ -0.45
RNF40-204ENST00000563683 RUFY3Q7L099 469 aa12.22□□□□□ -0.45
RNF40-204ENST00000563683 TRMT112Q9UI30 125 aaKnown RBP12.22□□□□□ -0.45
RNF40-204ENST00000563683 HSPA2P54652 639 aa12.22□□□□□ -0.45
RNF40-204ENST00000563683 PTH1RQ03431 593 aa12.22□□□□□ -0.45
RNF40-204ENST00000563683 EAF2Q96CJ1 260 aaPredicted RBP12.22□□□□□ -0.45
RNF40-204ENST00000563683 DBNDD2Q9BQY9 259 aa12.22□□□□□ -0.45
RNF40-204ENST00000563683 AKAP2Q9Y2D5 859 aa12.22□□□□□ -0.45
RNF40-204ENST00000563683 RASEFQ8IZ41 740 aa12.22□□□□□ -0.45
RNF40-204ENST00000563683 RPAP1Q9BWH6 1393 aaPredicted RBP12.22□□□□□ -0.45
RNF40-204ENST00000563683 NUTM2BA6NNL0 878 aaPredicted RBP12.22□□□□□ -0.45
RNF40-204ENST00000563683 NUTM2EB1AL46 878 aaPredicted RBP12.22□□□□□ -0.45
RNF40-204ENST00000563683 MCMDC2Q4G0Z9 681 aa12.22□□□□□ -0.45
RNF40-204ENST00000563683 VPS53Q5VIR6 699 aa12.22□□□□□ -0.45
RNF40-204ENST00000563683 NUTM2AQ8IVF1 878 aaPredicted RBP12.22□□□□□ -0.45
RNF40-204ENST00000563683 CCAR2Q8N163 923 aaKnown RBP12.22□□□□□ -0.45
RNF40-204ENST00000563683 NUP133Q8WUM0 1156 aa12.22□□□□□ -0.45
RNF40-204ENST00000563683 DACT1Q9NYF0 836 aa12.22□□□□□ -0.45
RNF40-204ENST00000563683 HMG20BQ9P0W2 317 aa12.22□□□□□ -0.45
RNF40-204ENST00000563683 ABCF2Q9UG63 623 aa12.22□□□□□ -0.45
RNF40-204ENST00000563683 CAMSAP1Q5T5Y3 1602 aa12.21□□□□□ -0.45
RNF40-204ENST00000563683 POLR3DP05423 398 aaPredicted RBP12.21□□□□□ -0.45
RNF40-204ENST00000563683 HSP90AB3PQ58FF7 597 aa12.21□□□□□ -0.45
RNF40-204ENST00000563683 DCAF5Q96JK2 942 aa12.21□□□□□ -0.45
RNF40-204ENST00000563683 PDIA4P13667 645 aaKnown RBP12.21□□□□□ -0.46
RNF40-204ENST00000563683 AIDAQ96BJ3 306 aa12.21□□□□□ -0.46
RNF40-204ENST00000563683 KCNF1Q9H3M0 494 aa12.21□□□□□ -0.46
RNF40-204ENST00000563683 DIP2CQ9Y2E4 1556 aa12.21□□□□□ -0.46
RNF40-204ENST00000563683 NPHP3Q7Z494 1330 aa12.21□□□□□ -0.46
RNF40-204ENST00000563683 ZNF213O14771 459 aa12.21□□□□□ -0.46
RNF40-204ENST00000563683 SART3Q15020 963 aaKnown RBP12.21□□□□□ -0.46
RNF40-204ENST00000563683 CCDC112Q8NEF3 446 aa12.21□□□□□ -0.46
RNF40-204ENST00000563683 A1BGP04217 495 aa12.2□□□□□ -0.46
RNF40-204ENST00000563683 HMGB1P09429 215 aaKnown RBP12.2□□□□□ -0.46
RNF40-204ENST00000563683 GCKRQ14397 625 aa12.2□□□□□ -0.46
RNF40-204ENST00000563683 FAM200AQ8TCP9 573 aa12.2□□□□□ -0.46
RNF40-204ENST00000563683 C8orf76Q96K31 380 aa12.2□□□□□ -0.46
RNF40-204ENST00000563683 FUCA2Q9BTY2 467 aa12.2□□□□□ -0.46
RNF40-204ENST00000563683 CCDC144CPQ8IYA2 1237 aa12.2□□□□□ -0.46
RNF40-204ENST00000563683 METTL22Q9BUU2 404 aaPredicted RBP12.2□□□□□ -0.46
RNF40-204ENST00000563683 FRMPD1Q5SYB0 1578 aa12.2□□□□□ -0.46
RNF40-204ENST00000563683 TDO2P48775 406 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms