RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 ARHGAP6O43182 974 aa7.14□□□□□ -1.27
CLK3-212ENST00000563418 PHACTR2O75167 634 aa7.14□□□□□ -1.27
CLK3-212ENST00000563418 PRPHP41219 470 aa7.14□□□□□ -1.27
CLK3-212ENST00000563418 CAPS2Q9BXY5 557 aa7.14□□□□□ -1.27
CLK3-212ENST00000563418 TTF2Q9UNY4 1162 aaKnown RBP7.14□□□□□ -1.27
CLK3-212ENST00000563418 BLMP54132 1417 aaPredicted RBP7.14□□□□□ -1.27
CLK3-212ENST00000563418 PNMA6AP0CW24 399 aaPredicted RBP7.14□□□□□ -1.27
CLK3-212ENST00000563418 ZFXP17010 805 aaPredicted RBP7.14□□□□□ -1.27
CLK3-212ENST00000563418 UBASH3AP57075 661 aa7.14□□□□□ -1.27
CLK3-212ENST00000563418 KANK3Q6NY19 840 aa7.14□□□□□ -1.27
CLK3-212ENST00000563418 CCDC155Q8N6L0 562 aa7.14□□□□□ -1.27
CLK3-212ENST00000563418 P3H4Q92791 437 aa7.14□□□□□ -1.27
CLK3-212ENST00000563418 TSGA10Q9BZW7 698 aa7.14□□□□□ -1.27
CLK3-212ENST00000563418 PPFIA2O75334 1257 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 TTC22Q5TAA0 569 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 RALYLQ86SE5 291 aaKnown RBP7.13□□□□□ -1.27
CLK3-212ENST00000563418 NUP88Q99567 741 aaPredicted RBP7.13□□□□□ -1.27
CLK3-212ENST00000563418 CEP131Q9UPN4 1083 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 RASSF2P50749 326 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 HSP90AA5PQ58FG0 334 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 GFM2Q969S9 779 aaKnown RBP7.13□□□□□ -1.27
CLK3-212ENST00000563418 NAP1L3Q99457 506 aaPredicted RBP7.13□□□□□ -1.27
CLK3-212ENST00000563418 KRT83P78385 493 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 STMN2Q93045 179 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 RIPOR2Q9Y4F9 1068 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 GNAI2P04899 355 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 DRP2Q13474 957 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 GAS2L3Q86XJ1 694 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 JADE2Q9NQC1 790 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 SATB2Q9UPW6 733 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 KRT86O43790 486 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 HIP1RO75146 1068 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 RUFY4Q6ZNE9 571 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 RASEFQ8IZ41 740 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 GAS2L2Q8NHY3 880 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 PAIP2BQ9ULR5 123 aaKnown RBP7.13□□□□□ -1.27
CLK3-212ENST00000563418 PLPPR3Q6T4P5 718 aa7.13□□□□□ -1.27
CLK3-212ENST00000563418 PYM1Q9BRP8 204 aaKnown RBP7.13□□□□□ -1.27
CLK3-212ENST00000563418 KIF14Q15058 1648 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 HECW1Q76N89 1606 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 EIF4G1Q04637 1599 aaKnown RBP7.12□□□□□ -1.27
CLK3-212ENST00000563418 CTIFO43310 598 aaKnown RBP7.12□□□□□ -1.27
CLK3-212ENST00000563418 CNNM3Q8NE01 707 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 CALR3Q96L12 384 aaKnown RBP7.12□□□□□ -1.27
CLK3-212ENST00000563418 CNPY2Q9Y2B0 182 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 NOL3O60936 208 aaKnown RBP7.12□□□□□ -1.27
CLK3-212ENST00000563418 TSC1Q92574 1164 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 ALDH3A1P30838 453 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 ERCC6LQ2NKX8 1250 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 CFAP58Q5T655 872 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 CNGA4Q8IV77 575 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 NAIPQ13075 1403 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 DIAPH1O60610 1272 aaKnown RBP7.12□□□□□ -1.27
CLK3-212ENST00000563418 SPAG1Q07617 926 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 SKAP1Q86WV1 359 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.12□□□□□ -1.27
CLK3-212ENST00000563418 FLOT1O75955 427 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 ELF1P32519 619 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 SESN3P58005 492 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 IFI16Q16666 785 aaKnown RBP7.12□□□□□ -1.27
CLK3-212ENST00000563418 NAPGQ99747 312 aaPredicted RBP7.12□□□□□ -1.27
CLK3-212ENST00000563418 HLTFQ14527 1009 aaKnown RBP eCLIP7.12□□□□□ -1.27
CLK3-212ENST00000563418 NBPF10Q6P3W6 841 aaKnown RBP7.12□□□□□ -1.27
CLK3-212ENST00000563418 SDCCAG8Q86SQ7 713 aaPredicted RBP7.12□□□□□ -1.27
CLK3-212ENST00000563418 RAB11FIP4Q86YS3 637 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 OSBPL9Q96SU4 736 aa7.12□□□□□ -1.27
CLK3-212ENST00000563418 GJB2P29033 226 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 CEBPZQ03701 1054 aaKnown RBP7.11□□□□□ -1.27
CLK3-212ENST00000563418 FBXO38Q6PIJ6 1188 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 WASF1Q92558 559 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 DAAM1Q9Y4D1 1078 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 ATP5DP30049 168 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 SART3Q15020 963 aaKnown RBP7.11□□□□□ -1.27
CLK3-212ENST00000563418 CCDC170Q8IYT3 715 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 STAG1Q8WVM7 1258 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 KIF21AQ7Z4S6 1674 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 CLCN6P51797 869 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 GKAP1Q5VSY0 366 aaPredicted RBP7.11□□□□□ -1.27
CLK3-212ENST00000563418 CLEC17AQ6ZS10 378 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 C17orf53Q8N3J3 647 aaPredicted RBP7.11□□□□□ -1.27
CLK3-212ENST00000563418 STAMBPO95630 424 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 SUGP1Q8IWZ8 645 aaKnown RBP7.11□□□□□ -1.27
CLK3-212ENST00000563418 ARHGAP24Q8N264 748 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 IQCGQ9H095 443 aaKnown RBP7.11□□□□□ -1.27
CLK3-212ENST00000563418 EIF2AK4Q9P2K8 1649 aaKnown RBP7.11□□□□□ -1.27
CLK3-212ENST00000563418 CCDC160A6NGH7 325 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 CETN3O15182 167 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 CYLC1P35663 651 aaPredicted RBP7.11□□□□□ -1.27
CLK3-212ENST00000563418 ARHGAP18Q8N392 663 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 BCAS4Q8TDM0 211 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 AQRO60306 1485 aaKnown RBP eCLIP7.11□□□□□ -1.274e-10■■■□□ 16.7
CLK3-212ENST00000563418 MPHOSPH6Q99547 160 aaKnown RBP7.11□□□□□ -1.27
CLK3-212ENST00000563418 BAG1Q99933 345 aaPredicted RBP7.11□□□□□ -1.27
CLK3-212ENST00000563418 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.11□□□□□ -1.27
CLK3-212ENST00000563418 ANKRD30BQ9BXX2 1392 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 SSBP05455 408 aaKnown RBP eCLIP7.11□□□□□ -1.27
CLK3-212ENST00000563418 RABEP2Q9H5N1 569 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 ZSWIM4Q9H7M6 989 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 KCNG4Q8TDN1 519 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 DNAJC25Q9H1X3 360 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms