RNA–Protein interactions for RNA: ENST00000563184.1

LINC00557-201, long intergenic non-protein coding RNA 557, humanhuman

BASIC

Gene LINC00557, Length 1,279 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00557-201ENST00000563184 FOXD3Q9UJU5 478 aaPredicted RBP9.71□□□□□ -0.86
LINC00557-201ENST00000563184 SASH3O75995 380 aa9.7□□□□□ -0.86
LINC00557-201ENST00000563184 SPEM2Q0P670 501 aa9.7□□□□□ -0.86
LINC00557-201ENST00000563184 CCINQ13939 588 aa9.7□□□□□ -0.86
LINC00557-201ENST00000563184 GAS6Q14393 721 aa9.7□□□□□ -0.86
LINC00557-201ENST00000563184 FAM182BQ5T319 152 aa9.7□□□□□ -0.86
LINC00557-201ENST00000563184 ZNF438Q7Z4V0 828 aa9.7□□□□□ -0.86
LINC00557-201ENST00000563184 ZNF428Q96B54 188 aa9.7□□□□□ -0.86
LINC00557-201ENST00000563184 ZFATQ9P243 1243 aa9.7□□□□□ -0.86
LINC00557-201ENST00000563184 PHF24Q9UPV7 400 aa9.7□□□□□ -0.86
LINC00557-201ENST00000563184 RBM47A0AV96 593 aaKnown RBP9.69□□□□□ -0.86
LINC00557-201ENST00000563184 C2CD2LO14523 706 aa9.69□□□□□ -0.86
LINC00557-201ENST00000563184 TNFRSF21O75509 655 aa9.69□□□□□ -0.86
LINC00557-201ENST00000563184 TARSP26639 723 aaKnown RBP9.69□□□□□ -0.86
LINC00557-201ENST00000563184 NLRP13Q86W25 1043 aa9.69□□□□□ -0.86
LINC00557-201ENST00000563184 TTC16Q8NEE8 873 aa9.69□□□□□ -0.86
LINC00557-201ENST00000563184 TRERF1Q96PN7 1200 aa9.69□□□□□ -0.86
LINC00557-201ENST00000563184 BCL2L13Q9BXK5 485 aa9.69□□□□□ -0.86
LINC00557-201ENST00000563184 CHRDQ9H2X0 955 aa9.69□□□□□ -0.86
LINC00557-201ENST00000563184 FOXR1Q6PIV2 292 aa9.68□□□□□ -0.86
LINC00557-201ENST00000563184 KRT25Q7Z3Z0 450 aa9.68□□□□□ -0.86
LINC00557-201ENST00000563184 RAB44Q7Z6P3 723 aaPredicted RBP9.68□□□□□ -0.86
LINC00557-201ENST00000563184 SETDB2Q96T68 719 aa9.68□□□□□ -0.86
LINC00557-201ENST00000563184 CNTN3Q9P232 1028 aa9.68□□□□□ -0.86
LINC00557-201ENST00000563184 ZNF16P17020 682 aaPredicted RBP9.67□□□□□ -0.86
LINC00557-201ENST00000563184 MAPK8P45983 427 aa9.67□□□□□ -0.86
LINC00557-201ENST00000563184 ENOX2Q16206 610 aaKnown RBP9.67□□□□□ -0.86
LINC00557-201ENST00000563184 EAPPQ56P03 285 aaPredicted RBP9.67□□□□□ -0.86
LINC00557-201ENST00000563184 SNX29Q8TEQ0 813 aa9.67□□□□□ -0.86
LINC00557-201ENST00000563184 GIPC2Q8TF65 315 aa9.67□□□□□ -0.86
LINC00557-201ENST00000563184 CSRNP1Q96S65 589 aa9.67□□□□□ -0.86
LINC00557-201ENST00000563184 COL25A1Q9BXS0 654 aaPredicted RBP9.67□□□□□ -0.86
LINC00557-201ENST00000563184 WWC3Q9ULE0 1092 aa9.67□□□□□ -0.86
LINC00557-201ENST00000563184 EIF1AYO14602 144 aaKnown RBP9.66□□□□□ -0.86
LINC00557-201ENST00000563184 MMP20O60882 483 aa9.66□□□□□ -0.86
LINC00557-201ENST00000563184 NFKB1P19838 968 aa9.66□□□□□ -0.86
LINC00557-201ENST00000563184 KRT76Q01546 638 aa9.66□□□□□ -0.86
LINC00557-201ENST00000563184 USPL1Q5W0Q7 1092 aa9.66□□□□□ -0.86
LINC00557-201ENST00000563184 ABI2Q9NYB9 513 aaPredicted RBP9.66□□□□□ -0.86
LINC00557-201ENST00000563184 PNMA6FA0A0J9YX94 578 aa9.65□□□□□ -0.86
LINC00557-201ENST00000563184 C1orf127Q8N9H9 656 aa9.65□□□□□ -0.86
LINC00557-201ENST00000563184 BHMTQ93088 406 aa9.65□□□□□ -0.86
LINC00557-201ENST00000563184 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.65□□□□□ -0.86
LINC00557-201ENST00000563184 UNCXA6NJT0 531 aa9.64□□□□□ -0.87
LINC00557-201ENST00000563184 CYP2E1P05181 493 aaPredicted RBP9.64□□□□□ -0.87
LINC00557-201ENST00000563184 LDHBP07195 334 aaKnown RBP9.64□□□□□ -0.87
LINC00557-201ENST00000563184 RARAP10276 462 aa9.64□□□□□ -0.87
LINC00557-201ENST00000563184 CNTNAP3BQ96NU0 1288 aa9.64□□□□□ -0.87
LINC00557-201ENST00000563184 CNTNAP3Q9BZ76 1288 aa9.64□□□□□ -0.87
LINC00557-201ENST00000563184 DNAJC25Q9H1X3 360 aa9.64□□□□□ -0.87
LINC00557-201ENST00000563184 ZFYVE28Q9HCC9 887 aa9.64□□□□□ -0.87
LINC00557-201ENST00000563184 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.64□□□□□ -0.87
LINC00557-201ENST00000563184 EREGO14944 169 aa9.63□□□□□ -0.87
LINC00557-201ENST00000563184 PHACTR2O75167 634 aa9.63□□□□□ -0.87
LINC00557-201ENST00000563184 MAP3K6O95382 1288 aa9.63□□□□□ -0.87
LINC00557-201ENST00000563184 RNFT1Q5M7Z0 435 aa9.63□□□□□ -0.87
LINC00557-201ENST00000563184 PNMA5Q96PV4 448 aa9.63□□□□□ -0.87
LINC00557-201ENST00000563184 EFCC1Q9HA90 598 aa9.63□□□□□ -0.87
LINC00557-201ENST00000563184 RNF19AQ9NV58 838 aa9.63□□□□□ -0.87
LINC00557-201ENST00000563184 CPNE3O75131 537 aaKnown RBP9.62□□□□□ -0.87
LINC00557-201ENST00000563184 NEFLP07196 543 aa9.62□□□□□ -0.87
LINC00557-201ENST00000563184 MX2P20592 715 aa9.62□□□□□ -0.87
LINC00557-201ENST00000563184 ZNF468Q5VIY5 522 aaPredicted RBP9.62□□□□□ -0.87
LINC00557-201ENST00000563184 OR13H1Q8NG92 308 aa9.62□□□□□ -0.87
LINC00557-201ENST00000563184 KLF15Q9UIH9 416 aa9.62□□□□□ -0.87
LINC00557-201ENST00000563184 SLURP2P0DP57 97 aa9.61□□□□□ -0.87
LINC00557-201ENST00000563184 BMP4P12644 408 aa9.61□□□□□ -0.87
LINC00557-201ENST00000563184 RBM25P49756 843 aaKnown RBP9.61□□□□□ -0.87
LINC00557-201ENST00000563184 TTC39BQ5VTQ0 682 aaPredicted RBP9.61□□□□□ -0.87
LINC00557-201ENST00000563184 MBIPQ9NS73 344 aa9.61□□□□□ -0.87
LINC00557-201ENST00000563184 TLR7Q9NYK1 1049 aaKnown RBP9.61□□□□□ -0.87
LINC00557-201ENST00000563184 PRPF40AO75400 957 aaKnown RBP9.6□□□□□ -0.87
LINC00557-201ENST00000563184 COL13A1Q5TAT6 717 aaPredicted RBP9.6□□□□□ -0.87
LINC00557-201ENST00000563184 SYT9Q86SS6 491 aa9.6□□□□□ -0.87
LINC00557-201ENST00000563184 PRR12Q9ULL5 1215 aa9.6□□□□□ -0.87
LINC00557-201ENST00000563184 POLR3DP05423 398 aaPredicted RBP9.59□□□□□ -0.87
LINC00557-201ENST00000563184 HOXD8P13378 290 aaPredicted RBP9.59□□□□□ -0.87
LINC00557-201ENST00000563184 CES1P23141 567 aa9.59□□□□□ -0.87
LINC00557-201ENST00000563184 SOX18P35713 384 aa9.59□□□□□ -0.87
LINC00557-201ENST00000563184 PCBP4P57723 403 aaKnown RBP9.59□□□□□ -0.87
LINC00557-201ENST00000563184 SRSF11Q05519 484 aaKnown RBP9.59□□□□□ -0.87
LINC00557-201ENST00000563184 ZNF326Q5BKZ1 582 aaKnown RBP9.59□□□□□ -0.87
LINC00557-201ENST00000563184 DHX32Q7L7V1 743 aaKnown RBP9.59□□□□□ -0.87
LINC00557-201ENST00000563184 CCDC74AQ96AQ1 378 aa9.59□□□□□ -0.87
LINC00557-201ENST00000563184 KANSL3Q9P2N6 904 aa9.59□□□□□ -0.87
LINC00557-201ENST00000563184 IRS1P35568 1242 aa9.58□□□□□ -0.88
LINC00557-201ENST00000563184 ATP2B2Q01814 1243 aa9.58□□□□□ -0.88
LINC00557-201ENST00000563184 ALG1LQ6GMV1 187 aa9.58□□□□□ -0.88
LINC00557-201ENST00000563184 GALNT12Q8IXK2 581 aa9.58□□□□□ -0.88
LINC00557-201ENST00000563184 DUSP9Q99956 384 aaKnown RBP9.58□□□□□ -0.88
LINC00557-201ENST00000563184 AVENQ9NQS1 362 aaPredicted RBP9.58□□□□□ -0.88
LINC00557-201ENST00000563184 ZBTB42B2RXF5 422 aa9.57□□□□□ -0.88
LINC00557-201ENST00000563184 SIN3BO75182 1162 aa9.57□□□□□ -0.88
LINC00557-201ENST00000563184 KIF4AO95239 1232 aa9.57□□□□□ -0.88
LINC00557-201ENST00000563184 PSAPP07602 524 aa9.57□□□□□ -0.88
LINC00557-201ENST00000563184 NEUROD1Q13562 356 aa9.57□□□□□ -0.88
LINC00557-201ENST00000563184 PI16Q6UXB8 463 aa9.57□□□□□ -0.88
LINC00557-201ENST00000563184 NPM2Q86SE8 214 aaKnown RBP9.57□□□□□ -0.88
LINC00557-201ENST00000563184 FBF1Q8TES7 1133 aa9.57□□□□□ -0.88
LINC00557-201ENST00000563184 PMEPA1Q969W9 287 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms