RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ATP8B2P98198 1209 aa20.73■□□□□ 0.91
VPS4A-202ENST00000562754 FAM161AQ3B820 660 aa20.73■□□□□ 0.91
VPS4A-202ENST00000562754 RPAP2Q8IXW5 612 aaPredicted RBP20.73■□□□□ 0.91
VPS4A-202ENST00000562754 CCDC85AQ96PX6 553 aaPredicted RBP20.73■□□□□ 0.91
VPS4A-202ENST00000562754 LRP5O75197 1615 aa20.73■□□□□ 0.91
VPS4A-202ENST00000562754 KIAA1551Q9HCM1 1747 aa20.73■□□□□ 0.91
VPS4A-202ENST00000562754 SF3B3Q15393 1217 aaKnown RBP20.72■□□□□ 0.91
VPS4A-202ENST00000562754 BRIP1Q9BX63 1249 aa20.72■□□□□ 0.91
VPS4A-202ENST00000562754 TAF1P21675 1872 aa20.72■□□□□ 0.91
VPS4A-202ENST00000562754 RTL9Q8NET4 1388 aa20.72■□□□□ 0.91
VPS4A-202ENST00000562754 POLA2Q14181 598 aa20.71■□□□□ 0.91
VPS4A-202ENST00000562754 NLRP3Q96P20 1036 aa20.71■□□□□ 0.91
VPS4A-202ENST00000562754 GREM2Q9H772 168 aa20.71■□□□□ 0.91
VPS4A-202ENST00000562754 CHMP3Q9Y3E7 222 aa20.71■□□□□ 0.91
VPS4A-202ENST00000562754 GTF3C3Q9Y5Q9 886 aa20.71■□□□□ 0.91
VPS4A-202ENST00000562754 SPEF2Q9C093 1822 aa20.71■□□□□ 0.91
VPS4A-202ENST00000562754 DLEC1Q9Y238 1755 aa20.7■□□□□ 0.9
VPS4A-202ENST00000562754 KLRG2A4D1S0 409 aaPredicted RBP20.7■□□□□ 0.9
VPS4A-202ENST00000562754 SRGAP3O43295 1099 aa20.7■□□□□ 0.9
VPS4A-202ENST00000562754 RFX5P48382 616 aaPredicted RBP20.7■□□□□ 0.9
VPS4A-202ENST00000562754 CRY2Q49AN0 593 aa20.7■□□□□ 0.9
VPS4A-202ENST00000562754 CCDC152Q4G0S7 254 aa20.7■□□□□ 0.9
VPS4A-202ENST00000562754 SSH3Q8TE77 659 aa20.7■□□□□ 0.9
VPS4A-202ENST00000562754 SPON1Q9HCB6 807 aa20.7■□□□□ 0.9
VPS4A-202ENST00000562754 HDAC1Q13547 482 aaPredicted RBP20.68■□□□□ 0.9
VPS4A-202ENST00000562754 SEC31BQ9NQW1 1179 aa20.68■□□□□ 0.9
VPS4A-202ENST00000562754 PPP4R2Q9NY27 417 aa20.68■□□□□ 0.9
VPS4A-202ENST00000562754 IGHDP01880 384 aa20.67■□□□□ 0.9
VPS4A-202ENST00000562754 ITGA6P23229 1130 aa20.67■□□□□ 0.9
VPS4A-202ENST00000562754 HMMRO75330 724 aa20.66■□□□□ 0.9
VPS4A-202ENST00000562754 PDE6BP35913 854 aa20.66■□□□□ 0.9
VPS4A-202ENST00000562754 KLHDC4Q8TBB5 520 aa20.66■□□□□ 0.9
VPS4A-202ENST00000562754 PA2G4Q9UQ80 394 aaKnown RBP20.66■□□□□ 0.9
VPS4A-202ENST00000562754 CACNA1SQ13698 1873 aa20.65■□□□□ 0.9
VPS4A-202ENST00000562754 PTPN12Q05209 780 aaKnown RBP20.65■□□□□ 0.9
VPS4A-202ENST00000562754 IFIT5Q13325 482 aaKnown RBP20.65■□□□□ 0.9
VPS4A-202ENST00000562754 CCDC57Q2TAC2 916 aa20.65■□□□□ 0.9
VPS4A-202ENST00000562754 B4GALNT3Q6L9W6 998 aa20.65■□□□□ 0.9
VPS4A-202ENST00000562754 ZNF594Q96JF6 807 aaPredicted RBP20.65■□□□□ 0.9
VPS4A-202ENST00000562754 ANKRD18BA2A2Z9 1011 aa20.64■□□□□ 0.89
VPS4A-202ENST00000562754 SRGNP10124 158 aa20.64■□□□□ 0.89
VPS4A-202ENST00000562754 HOXA10P31260 410 aaPredicted RBP20.64■□□□□ 0.89
VPS4A-202ENST00000562754 C2CD5Q86YS7 1000 aa20.64■□□□□ 0.89
VPS4A-202ENST00000562754 RPGRQ92834 1020 aaKnown RBP20.64■□□□□ 0.89
VPS4A-202ENST00000562754 COPRSQ9NQ92 184 aa20.64■□□□□ 0.89
VPS4A-202ENST00000562754 A0A1B0GUL6 1792 aa20.64■□□□□ 0.89
VPS4A-202ENST00000562754 CHRNA5P30532 468 aa20.63■□□□□ 0.89
VPS4A-202ENST00000562754 DDX46Q7L014 1031 aaKnown RBP20.63■□□□□ 0.89
VPS4A-202ENST00000562754 CELF1Q92879 486 aaKnown RBP20.63■□□□□ 0.89
VPS4A-202ENST00000562754 CCDC136Q96JN2 1154 aa20.63■□□□□ 0.89
VPS4A-202ENST00000562754 RWDD1Q9H446 243 aaPredicted RBP20.63■□□□□ 0.89
VPS4A-202ENST00000562754 KDM2BQ8NHM5 1336 aa20.62■□□□□ 0.89
VPS4A-202ENST00000562754 NPR1P16066 1061 aa20.62■□□□□ 0.89
VPS4A-202ENST00000562754 BRCA1P38398 1863 aaKnown RBP20.62■□□□□ 0.89
VPS4A-202ENST00000562754 LRRC37AA6NMS7 1700 aa20.61■□□□□ 0.89
VPS4A-202ENST00000562754 GRAPQ13588 217 aa20.61■□□□□ 0.89
VPS4A-202ENST00000562754 GRAPLQ8TC17 118 aaPredicted RBP20.61■□□□□ 0.89
VPS4A-202ENST00000562754 RBM17Q96I25 401 aaKnown RBP20.61■□□□□ 0.89
VPS4A-202ENST00000562754 CDC5LQ99459 802 aaKnown RBP20.61■□□□□ 0.89
VPS4A-202ENST00000562754 PUS3Q9BZE2 481 aaKnown RBP20.61■□□□□ 0.89
VPS4A-202ENST00000562754 SIL1Q9H173 461 aa20.61■□□□□ 0.89
VPS4A-202ENST00000562754 DCTPP1Q9H773 170 aa20.61■□□□□ 0.89
VPS4A-202ENST00000562754 EXOC6BQ9Y2D4 811 aa20.61■□□□□ 0.89
VPS4A-202ENST00000562754 NOP58Q9Y2X3 529 aaKnown RBP20.61■□□□□ 0.89
VPS4A-202ENST00000562754 H0YIN7 160 aa20.6■□□□□ 0.89
VPS4A-202ENST00000562754 SURF6O75683 361 aaKnown RBP20.6■□□□□ 0.89
VPS4A-202ENST00000562754 TAF7LQ5H9L4 462 aa20.6■□□□□ 0.89
VPS4A-202ENST00000562754 MASTLQ96GX5 879 aa20.6■□□□□ 0.89
VPS4A-202ENST00000562754 CRAMP1Q96RY5 1269 aa20.6■□□□□ 0.89
VPS4A-202ENST00000562754 PDZRN3Q9UPQ7 1066 aa20.6■□□□□ 0.89
VPS4A-202ENST00000562754 CD2APQ9Y5K6 639 aa20.6■□□□□ 0.89
VPS4A-202ENST00000562754 SLX4Q8IY92 1834 aa20.6■□□□□ 0.89
VPS4A-202ENST00000562754 DPEP1P16444 411 aa20.59■□□□□ 0.89
VPS4A-202ENST00000562754 LRRC24Q50LG9 513 aa20.59■□□□□ 0.89
VPS4A-202ENST00000562754 STYK1Q6J9G0 422 aa20.59■□□□□ 0.89
VPS4A-202ENST00000562754 SLC51AQ86UW1 340 aa20.59■□□□□ 0.89
VPS4A-202ENST00000562754 ANKRD18AQ8IVF6 992 aa20.59■□□□□ 0.89
VPS4A-202ENST00000562754 SMC5Q8IY18 1101 aa20.59■□□□□ 0.89
VPS4A-202ENST00000562754 KLHL34Q8N239 644 aa20.59■□□□□ 0.89
VPS4A-202ENST00000562754 A0A0G2JLW4 131 aa20.58■□□□□ 0.89
VPS4A-202ENST00000562754 EYA2O00167 538 aa20.58■□□□□ 0.89
VPS4A-202ENST00000562754 KCNA3P22001 575 aa20.58■□□□□ 0.89
VPS4A-202ENST00000562754 RPS8P62241 208 aaKnown RBP20.58■□□□□ 0.89
VPS4A-202ENST00000562754 ATG9AQ7Z3C6 839 aa20.58■□□□□ 0.89
VPS4A-202ENST00000562754 PPP1R1BQ9UD71 204 aaPredicted RBP20.58■□□□□ 0.89
VPS4A-202ENST00000562754 CIAO1O76071 339 aa20.57■□□□□ 0.88
VPS4A-202ENST00000562754 IGHMBP2P38935 993 aaKnown RBP20.57■□□□□ 0.88
VPS4A-202ENST00000562754 TGFB2P61812 414 aa20.57■□□□□ 0.88
VPS4A-202ENST00000562754 ZNF622Q969S3 477 aaKnown RBP eCLIP20.57■□□□□ 0.88
VPS4A-202ENST00000562754 LDHAL6AQ6ZMR3 332 aa20.56■□□□□ 0.88
VPS4A-202ENST00000562754 GCC1Q96CN9 775 aa20.56■□□□□ 0.88
VPS4A-202ENST00000562754 FBXO3Q9UK99 471 aa20.56■□□□□ 0.88
VPS4A-202ENST00000562754 RIPOR2Q9Y4F9 1068 aa20.56■□□□□ 0.88
VPS4A-202ENST00000562754 APBB1O00213 710 aa20.55■□□□□ 0.88
VPS4A-202ENST00000562754 SASH1O94885 1247 aa20.55■□□□□ 0.88
VPS4A-202ENST00000562754 G3BP1Q13283 466 aaKnown RBP eCLIP20.55■□□□□ 0.88
VPS4A-202ENST00000562754 OS9Q13438 667 aaPredicted RBP20.55■□□□□ 0.88
VPS4A-202ENST00000562754 CENPQQ7L2Z9 268 aaPredicted RBP20.55■□□□□ 0.88
VPS4A-202ENST00000562754 NLGN2Q8NFZ4 835 aa20.55■□□□□ 0.88
VPS4A-202ENST00000562754 MPHOSPH8Q99549 860 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms