RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 UBR7Q8N806 425 aa8.19□□□□□ -1.1
TSPAN3-209ENST00000560715 SECISBP2LQ93073 1101 aaKnown RBP8.19□□□□□ -1.1
TSPAN3-209ENST00000560715 SRA1Q9HD15 236 aaKnown RBP8.19□□□□□ -1.1
TSPAN3-209ENST00000560715 METTL5Q9NRN9 209 aaKnown RBP8.19□□□□□ -1.1
TSPAN3-209ENST00000560715 KIF7Q2M1P5 1343 aa8.19□□□□□ -1.1
TSPAN3-209ENST00000560715 NUP155O75694 1391 aa8.19□□□□□ -1.1
TSPAN3-209ENST00000560715 DYTNA2CJ06 578 aa8.19□□□□□ -1.1
TSPAN3-209ENST00000560715 C6orf132Q5T0Z8 1188 aa8.19□□□□□ -1.1
TSPAN3-209ENST00000560715 C14orf80Q86SX3 495 aa8.19□□□□□ -1.1
TSPAN3-209ENST00000560715 ATCAYQ86WG3 371 aa8.19□□□□□ -1.1
TSPAN3-209ENST00000560715 UNC13BO14795 1591 aa8.19□□□□□ -1.1
TSPAN3-209ENST00000560715 EPB41L2O43491 1005 aaKnown RBP8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 SULF1Q8IWU6 871 aa8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 PDCD7Q8N8D1 485 aaKnown RBP8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 C1orf216Q8TAB5 229 aa8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 HNRNPLLQ8WVV9 542 aaKnown RBP8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 SAP130Q9H0E3 1048 aa8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 COPRSQ9NQ92 184 aa8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 POLR1AO95602 1720 aaPredicted RBP8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 SENP3-EIF4A1A0A087X0R7 540 aa8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 ENPP3O14638 875 aa8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 PPP4CP60510 307 aa8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 SERINC3Q13530 473 aa8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 OXLD1Q5BKU9 147 aa8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 ILDR1Q86SU0 546 aaPredicted RBP8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 CKAP2LQ8IYA6 745 aa8.18□□□□□ -1.1
TSPAN3-209ENST00000560715 COL9A1P20849 921 aa8.17□□□□□ -1.1
TSPAN3-209ENST00000560715 MCCP23508 829 aa8.17□□□□□ -1.1
TSPAN3-209ENST00000560715 ABCC1P33527 1531 aa8.17□□□□□ -1.1
TSPAN3-209ENST00000560715 PNMA6FA0A0J9YX94 578 aa8.17□□□□□ -1.1
TSPAN3-209ENST00000560715 PLIN1O60240 522 aa8.17□□□□□ -1.1
TSPAN3-209ENST00000560715 BRD3Q15059 726 aa8.17□□□□□ -1.1
TSPAN3-209ENST00000560715 EFCAB2Q5VUJ9 269 aa8.17□□□□□ -1.1
TSPAN3-209ENST00000560715 CCDC102BQ68D86 513 aa8.17□□□□□ -1.1
TSPAN3-209ENST00000560715 NEUROD6Q96NK8 337 aa8.17□□□□□ -1.1
TSPAN3-209ENST00000560715 DUOX2Q9NRD8 1548 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 HS1BP3Q53T59 392 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 NUDT18Q6ZVK8 323 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 CREBRFQ8IUR6 639 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 NIF3L1Q9GZT8 377 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 FAM135AQ9P2D6 1515 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 IGHA2P01877 340 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 SLC4A10Q6U841 1118 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 LILRB2Q8N423 598 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 PNMA1Q8ND90 353 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 BRINP2Q9C0B6 783 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 CEP126Q9P2H0 1117 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 WDR7Q9Y4E6 1490 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 ARHGEF12Q9NZN5 1544 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 IQGAP3Q86VI3 1631 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 DNTTIP2Q5QJE6 756 aaKnown RBP8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 GAS2L3Q86XJ1 694 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 MS4A3Q96HJ5 214 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 PRKD2Q9BZL6 878 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 PTPRHQ9HD43 1115 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 HOMER2Q9NSB8 354 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 TRIM35Q9UPQ4 493 aa8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 V9GY48 417 aaPredicted RBP8.16□□□□□ -1.1
TSPAN3-209ENST00000560715 ABCA9Q8IUA7 1624 aa8.15□□□□□ -1.1
TSPAN3-209ENST00000560715 ZBTB7BO15156 539 aaPredicted RBP8.15□□□□□ -1.1
TSPAN3-209ENST00000560715 FOSP01100 380 aaPredicted RBP8.15□□□□□ -1.1
TSPAN3-209ENST00000560715 AMOTL1Q8IY63 956 aa8.15□□□□□ -1.1
TSPAN3-209ENST00000560715 SMAD5Q99717 465 aaKnown RBP8.15□□□□□ -1.1
TSPAN3-209ENST00000560715 RBCK1Q9BYM8 510 aa8.15□□□□□ -1.1
TSPAN3-209ENST00000560715 SSBP05455 408 aaKnown RBP eCLIP8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 GJA5P36382 358 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 SEC13P55735 322 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 SLC20A2Q08357 652 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 DSC3Q14574 896 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 RASA3Q14644 834 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 NBPF8Q3BBV2 869 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 BRDTQ58F21 947 aaPredicted RBP8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 SASS6Q6UVJ0 657 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 ANKS3Q6ZW76 656 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 NFATC2IPQ8NCF5 419 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 DEPDC7Q96QD5 511 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 CHMP5Q9NZZ3 219 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 MAP10Q9P2G4 905 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 ERBB3P21860 1342 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 ERBINQ96RT1 1412 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 NLRP1Q9C000 1473 aa8.15□□□□□ -1.11
TSPAN3-209ENST00000560715 TTLL13PA6NNM8 815 aa8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 NRDCO43847 1150 aa8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 IRX3P78415 501 aaPredicted RBP8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 PLEKHG4Q58EX7 1191 aa8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 VIRMAQ69YN4 1812 aaKnown RBP8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 SPATA31E1Q6ZUB1 1445 aa8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 EMID1Q96A84 441 aaPredicted RBP8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 SLC39A13Q96H72 371 aa8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 DNAJC7Q99615 494 aa8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 TRIM55Q9BYV6 548 aa8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 UHRF1BP1Q6BDS2 1440 aa8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 PPP1R12AO14974 1030 aaPredicted RBP8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 SCGB1D2O95969 90 aa8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 CNGA1P29973 690 aa8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 PI16Q6UXB8 463 aa8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 NOL7Q9UMY1 257 aaKnown RBP8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 LEMD3Q9Y2U8 911 aa8.14□□□□□ -1.11
TSPAN3-209ENST00000560715 MAGI2Q86UL8 1455 aa8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 RTEL1-TNFRSF6BF6WH68 1400 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms