RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 CHGBP05060 677 aa13.42□□□□□ -0.26
CUX1-218ENST00000560541 TM6SF1Q9BZW5 370 aa13.42□□□□□ -0.26
CUX1-218ENST00000560541 ALDH1L1O75891 902 aa13.42□□□□□ -0.26
CUX1-218ENST00000560541 PIP4K2AP48426 406 aaPredicted RBP13.42□□□□□ -0.26
CUX1-218ENST00000560541 SLC39A6Q13433 755 aa13.42□□□□□ -0.26
CUX1-218ENST00000560541 MAP4K1Q92918 833 aa13.42□□□□□ -0.26
CUX1-218ENST00000560541 CCDC9Q9Y3X0 531 aaKnown RBP13.42□□□□□ -0.26
CUX1-218ENST00000560541 ARHGAP23Q9P227 1491 aa13.42□□□□□ -0.26
CUX1-218ENST00000560541 RGPD2P0DJD1 1756 aa13.42□□□□□ -0.26
CUX1-218ENST00000560541 BLOC1S2Q6QNY1 142 aa13.42□□□□□ -0.26
CUX1-218ENST00000560541 EP400NLQ6ZTU2 488 aa13.42□□□□□ -0.26
CUX1-218ENST00000560541 SLIT1O75093 1534 aa13.42□□□□□ -0.26
CUX1-218ENST00000560541 ERICH4A6NGS2 130 aa13.41□□□□□ -0.26
CUX1-218ENST00000560541 KRT85P78386 507 aa13.41□□□□□ -0.26
CUX1-218ENST00000560541 PYCARDQ9ULZ3 195 aa13.41□□□□□ -0.26
CUX1-218ENST00000560541 LARP1Q6PKG0 1096 aaKnown RBP13.41□□□□□ -0.26
CUX1-218ENST00000560541 RIC3Q7Z5B4 369 aa13.41□□□□□ -0.26
CUX1-218ENST00000560541 LUZP1Q86V48 1076 aa13.41□□□□□ -0.26
CUX1-218ENST00000560541 KCNF1Q9H3M0 494 aa13.41□□□□□ -0.26
CUX1-218ENST00000560541 CCDC192P0DO97 292 aa13.4□□□□□ -0.26
CUX1-218ENST00000560541 PDCL2Q8N4E4 241 aa13.4□□□□□ -0.26
CUX1-218ENST00000560541 MYRIPQ8NFW9 859 aa13.4□□□□□ -0.26
CUX1-218ENST00000560541 LINS1Q8NG48 757 aa13.4□□□□□ -0.26
CUX1-218ENST00000560541 MED1Q15648 1581 aaPredicted RBP13.4□□□□□ -0.26
CUX1-218ENST00000560541 KCNB2Q92953 911 aa13.4□□□□□ -0.26
CUX1-218ENST00000560541 DACT1Q9NYF0 836 aa13.4□□□□□ -0.26
CUX1-218ENST00000560541 KDM3BQ7LBC6 1761 aa13.4□□□□□ -0.26
CUX1-218ENST00000560541 CRYBG1Q9Y4K1 1723 aa13.4□□□□□ -0.26
CUX1-218ENST00000560541 GOLGA6L4A6NEF3 574 aa13.4□□□□□ -0.26
CUX1-218ENST00000560541 EPHA10Q5JZY3 1008 aa13.4□□□□□ -0.26
CUX1-218ENST00000560541 NUP62CLQ9H1M0 184 aa13.4□□□□□ -0.26
CUX1-218ENST00000560541 JAK2O60674 1132 aa13.39□□□□□ -0.27
CUX1-218ENST00000560541 IGKV5-2P06315 115 aa13.39□□□□□ -0.27
CUX1-218ENST00000560541 PSMA5P28066 241 aa13.39□□□□□ -0.27
CUX1-218ENST00000560541 ANKRD24Q8TF21 1146 aa13.39□□□□□ -0.27
CUX1-218ENST00000560541 DDX11Q96FC9 970 aa13.39□□□□□ -0.27
CUX1-218ENST00000560541 GCP02774 474 aa13.39□□□□□ -0.27
CUX1-218ENST00000560541 CAPN2P17655 700 aa13.39□□□□□ -0.27
CUX1-218ENST00000560541 FOSBP53539 338 aa13.39□□□□□ -0.27
CUX1-218ENST00000560541 TOB2Q14106 344 aaPredicted RBP13.39□□□□□ -0.27
CUX1-218ENST00000560541 MAP3K11Q16584 847 aa13.39□□□□□ -0.27
CUX1-218ENST00000560541 RPS6KB1P23443 525 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 TYRO3Q06418 890 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 CCDC129Q6ZRS4 1044 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 SPATA32Q96LK8 384 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 LRRC2Q9BYS8 371 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 AXIN2Q9Y2T1 843 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 LOC102724159A0A0B4J2E5 919 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 PPFIA3O75145 1194 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 PWP2Q15269 919 aaKnown RBP13.38□□□□□ -0.27
CUX1-218ENST00000560541 AMOTQ4VCS5 1084 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 RNF20Q5VTR2 975 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 KCNH5Q8NCM2 988 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 ORAI2Q96SN7 254 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 NFAT5O94916 1531 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 DDX58O95786 925 aaKnown RBP13.38□□□□□ -0.27
CUX1-218ENST00000560541 MYD88Q99836 296 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 TNMDQ9H2S6 317 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 MRVI1Q9Y6F6 885 aa13.38□□□□□ -0.27
CUX1-218ENST00000560541 HIP1O00291 1037 aa13.37□□□□□ -0.27
CUX1-218ENST00000560541 PTGS1P23219 599 aa13.37□□□□□ -0.27
CUX1-218ENST00000560541 CEBPZQ03701 1054 aaKnown RBP13.37□□□□□ -0.27
CUX1-218ENST00000560541 SEC62Q99442 399 aaKnown RBP13.37□□□□□ -0.27
CUX1-218ENST00000560541 TMX1Q9H3N1 280 aa13.37□□□□□ -0.27
CUX1-218ENST00000560541 NPHP4O75161 1426 aaPredicted RBP13.37□□□□□ -0.27
CUX1-218ENST00000560541 PDIA6Q15084 440 aa13.37□□□□□ -0.27
CUX1-218ENST00000560541 ANO6Q4KMQ2 910 aa13.37□□□□□ -0.27
CUX1-218ENST00000560541 FAM200AQ8TCP9 573 aa13.37□□□□□ -0.27
CUX1-218ENST00000560541 TIGD1Q96MW7 591 aa13.37□□□□□ -0.27
CUX1-218ENST00000560541 DDX21Q9NR30 783 aaKnown RBP eCLIP13.37□□□□□ -0.27
CUX1-218ENST00000560541 KIAA1524Q8TCG1 905 aa13.36□□□□□ -0.27
CUX1-218ENST00000560541 XAGE3Q8WTP9 111 aa13.36□□□□□ -0.27
CUX1-218ENST00000560541 HSP90B1P14625 803 aaKnown RBP13.36□□□□□ -0.27
CUX1-218ENST00000560541 PDCP20941 246 aa13.36□□□□□ -0.27
CUX1-218ENST00000560541 COPS6Q7L5N1 327 aa13.36□□□□□ -0.27
CUX1-218ENST00000560541 DRC7Q8IY82 874 aa13.36□□□□□ -0.27
CUX1-218ENST00000560541 BICD2Q8TD16 824 aa13.36□□□□□ -0.27
CUX1-218ENST00000560541 SPTLC3Q9NUV7 552 aa13.36□□□□□ -0.27
CUX1-218ENST00000560541 NR1I2O75469 434 aa13.36□□□□□ -0.27
CUX1-218ENST00000560541 LEO1Q8WVC0 666 aaPredicted RBP13.36□□□□□ -0.27
CUX1-218ENST00000560541 PRIMPOLQ96LW4 560 aa13.36□□□□□ -0.27
CUX1-218ENST00000560541 MED23Q9ULK4 1368 aa13.35□□□□□ -0.27
CUX1-218ENST00000560541 NEURL1BA8MQ27 555 aa13.35□□□□□ -0.27
CUX1-218ENST00000560541 TAF5LO75529 589 aa13.35□□□□□ -0.27
CUX1-218ENST00000560541 TNNT3P45378 269 aaPredicted RBP13.35□□□□□ -0.27
CUX1-218ENST00000560541 LRMPQ12912 555 aa13.35□□□□□ -0.27
CUX1-218ENST00000560541 SLFNL1Q499Z3 407 aa13.35□□□□□ -0.27
CUX1-218ENST00000560541 ARHGEF25Q86VW2 580 aa13.35□□□□□ -0.27
CUX1-218ENST00000560541 BCL2L12Q9HB09 334 aa13.35□□□□□ -0.27
CUX1-218ENST00000560541 CBX8Q9HC52 389 aa13.35□□□□□ -0.27
CUX1-218ENST00000560541 DBNLQ9UJU6 430 aaKnown RBP13.35□□□□□ -0.27
CUX1-218ENST00000560541 COL15A1P39059 1388 aa13.35□□□□□ -0.27
CUX1-218ENST00000560541 ZC3H6P61129 1189 aaKnown RBP13.35□□□□□ -0.27
CUX1-218ENST00000560541 FAM193AP78312 1265 aa13.35□□□□□ -0.27
CUX1-218ENST00000560541 NEXNQ0ZGT2 675 aa13.35□□□□□ -0.27
CUX1-218ENST00000560541 ANKRD1Q15327 319 aa13.35□□□□□ -0.27
CUX1-218ENST00000560541 NRBP1Q9UHY1 535 aa13.35□□□□□ -0.27
CUX1-218ENST00000560541 HMGN5P82970 282 aaKnown RBP13.34□□□□□ -0.27
CUX1-218ENST00000560541 TFCP2Q12800 502 aa13.34□□□□□ -0.27
CUX1-218ENST00000560541 BCCIPQ9P287 314 aaKnown RBP eCLIP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 171 ms