RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 BBOX1O75936 387 aa23.55■■□□□ 1.36
TSPAN3-208ENST00000560514 RAD17O75943 681 aa23.55■■□□□ 1.36
TSPAN3-208ENST00000560514 PPP2R1AP30153 589 aa23.55■■□□□ 1.36
TSPAN3-208ENST00000560514 RTFDC1Q9BY42 306 aaPredicted RBP23.55■■□□□ 1.36
TSPAN3-208ENST00000560514 ABCC4O15439 1325 aa23.55■■□□□ 1.36
TSPAN3-208ENST00000560514 DLG5Q8TDM6 1919 aa23.55■■□□□ 1.36
TSPAN3-208ENST00000560514 SP8Q8IXZ3 490 aa23.54■■□□□ 1.36
TSPAN3-208ENST00000560514 ERBB4Q15303 1308 aa23.54■■□□□ 1.36
TSPAN3-208ENST00000560514 HUNKP57058 714 aa23.53■■□□□ 1.36
TSPAN3-208ENST00000560514 KIAA2012Q0VF49 1180 aa23.53■■□□□ 1.36
TSPAN3-208ENST00000560514 CNOT7Q9UIV1 285 aaKnown RBP23.53■■□□□ 1.36
TSPAN3-208ENST00000560514 SLC10A5Q5PT55 438 aa23.52■■□□□ 1.36
TSPAN3-208ENST00000560514 DDX46Q7L014 1031 aaKnown RBP23.52■■□□□ 1.36
TSPAN3-208ENST00000560514 TRPM4Q8TD43 1214 aa23.51■■□□□ 1.35
TSPAN3-208ENST00000560514 HIRAP54198 1017 aaPredicted RBP23.5■■□□□ 1.35
TSPAN3-208ENST00000560514 USP48Q86UV5 1035 aa23.5■■□□□ 1.35
TSPAN3-208ENST00000560514 MICALL2Q8IY33 904 aa23.49■■□□□ 1.35
TSPAN3-208ENST00000560514 EIF2S2P20042 333 aaKnown RBP23.48■■□□□ 1.35
TSPAN3-208ENST00000560514 HSP90AB3PQ58FF7 597 aa23.48■■□□□ 1.35
TSPAN3-208ENST00000560514 PDE4DIPQ5VU43 2346 aa23.47■■□□□ 1.35
TSPAN3-208ENST00000560514 GRAPQ13588 217 aa23.47■■□□□ 1.35
TSPAN3-208ENST00000560514 RGMBQ6NW40 437 aa23.47■■□□□ 1.35
TSPAN3-208ENST00000560514 C2orf69Q8N8R5 385 aa23.47■■□□□ 1.35
TSPAN3-208ENST00000560514 GRAPLQ8TC17 118 aaPredicted RBP23.47■■□□□ 1.35
TSPAN3-208ENST00000560514 THUMPD2Q9BTF0 503 aaKnown RBP23.47■■□□□ 1.35
TSPAN3-208ENST00000560514 ANKRD36CQ5JPF3 1778 aa23.47■■□□□ 1.35
TSPAN3-208ENST00000560514 HCLS1P14317 486 aaPredicted RBP23.46■■□□□ 1.35
TSPAN3-208ENST00000560514 LAMB2P55268 1798 aa23.46■■□□□ 1.35
TSPAN3-208ENST00000560514 TMC4Q7Z404 712 aa23.46■■□□□ 1.35
TSPAN3-208ENST00000560514 CCDC102AQ96A19 550 aa23.46■■□□□ 1.35
TSPAN3-208ENST00000560514 ZIC5Q96T25 663 aa23.46■■□□□ 1.35
TSPAN3-208ENST00000560514 TSPYL4Q9UJ04 414 aa23.46■■□□□ 1.35
TSPAN3-208ENST00000560514 MAPK8IP3Q9UPT6 1336 aa23.45■■□□□ 1.34
TSPAN3-208ENST00000560514 NFE2L2Q16236 605 aa23.45■■□□□ 1.34
TSPAN3-208ENST00000560514 KRT26Q7Z3Y9 468 aa23.45■■□□□ 1.34
TSPAN3-208ENST00000560514 DPF2Q92785 391 aa23.45■■□□□ 1.34
TSPAN3-208ENST00000560514 PNNQ9H307 717 aaKnown RBP23.45■■□□□ 1.34
TSPAN3-208ENST00000560514 GBA2Q9HCG7 927 aaPredicted RBP23.45■■□□□ 1.34
TSPAN3-208ENST00000560514 SAGE1Q9NXZ1 904 aa23.45■■□□□ 1.34
TSPAN3-208ENST00000560514 SHTN1A0MZ66 631 aa23.44■■□□□ 1.34
TSPAN3-208ENST00000560514 YDJCA8MPS7 323 aa23.44■■□□□ 1.34
TSPAN3-208ENST00000560514 SAMD7Q7Z3H4 446 aa23.44■■□□□ 1.34
TSPAN3-208ENST00000560514 DCPSQ96C86 337 aaKnown RBP23.44■■□□□ 1.34
TSPAN3-208ENST00000560514 TRMT112Q9UI30 125 aaKnown RBP23.44■■□□□ 1.34
TSPAN3-208ENST00000560514 ZBTB12Q9Y330 459 aaPredicted RBP23.44■■□□□ 1.34
TSPAN3-208ENST00000560514 POLR2AP24928 1970 aaKnown RBP23.43■■□□□ 1.34
TSPAN3-208ENST00000560514 AKAP11Q9UKA4 1901 aa23.43■■□□□ 1.34
TSPAN3-208ENST00000560514 ZNF157P51786 506 aaPredicted RBP23.43■■□□□ 1.34
TSPAN3-208ENST00000560514 WASHC4Q2M389 1173 aa23.43■■□□□ 1.34
TSPAN3-208ENST00000560514 SH3TC1Q8TE82 1336 aa23.42■■□□□ 1.34
TSPAN3-208ENST00000560514 AIMP1Q12904 312 aaKnown RBP23.42■■□□□ 1.34
TSPAN3-208ENST00000560514 TBC1D10BQ4KMP7 808 aaPredicted RBP23.42■■□□□ 1.34
TSPAN3-208ENST00000560514 NLRP10Q86W26 655 aa23.42■■□□□ 1.34
TSPAN3-208ENST00000560514 PSMD14O00487 310 aa23.41■■□□□ 1.34
TSPAN3-208ENST00000560514 ANXA1P04083 346 aa23.41■■□□□ 1.34
TSPAN3-208ENST00000560514 SOX10P56693 466 aa23.41■■□□□ 1.34
TSPAN3-208ENST00000560514 KIF23Q02241 960 aaPredicted RBP23.41■■□□□ 1.34
TSPAN3-208ENST00000560514 RBM26Q5T8P6 1007 aaKnown RBP23.41■■□□□ 1.34
TSPAN3-208ENST00000560514 TAF1P21675 1872 aa23.41■■□□□ 1.34
TSPAN3-208ENST00000560514 FAM155AB1AL88 458 aaPredicted RBP23.4■■□□□ 1.34
TSPAN3-208ENST00000560514 TRPA1O75762 1119 aa23.4■■□□□ 1.34
TSPAN3-208ENST00000560514 PDIA6Q15084 440 aa23.4■■□□□ 1.34
TSPAN3-208ENST00000560514 COPS6Q7L5N1 327 aa23.4■■□□□ 1.34
TSPAN3-208ENST00000560514 DBNDD1Q9H9R9 158 aa23.4■■□□□ 1.34
TSPAN3-208ENST00000560514 NSFL1CQ9UNZ2 370 aaKnown RBP23.4■■□□□ 1.34
TSPAN3-208ENST00000560514 C6orf229H3BNL8 230 aa23.39■■□□□ 1.33
TSPAN3-208ENST00000560514 RIMBP2O15034 1052 aa23.39■■□□□ 1.33
TSPAN3-208ENST00000560514 RPS12P25398 132 aaKnown RBP23.39■■□□□ 1.33
TSPAN3-208ENST00000560514 TCIRG1Q13488 830 aa23.39■■□□□ 1.33
TSPAN3-208ENST00000560514 PROSER3Q2NL68 480 aa23.39■■□□□ 1.33
TSPAN3-208ENST00000560514 DLK2Q6UY11 383 aa23.39■■□□□ 1.33
TSPAN3-208ENST00000560514 LRP10Q7Z4F1 713 aa23.39■■□□□ 1.33
TSPAN3-208ENST00000560514 PLEKHF1Q96S99 279 aa23.39■■□□□ 1.33
TSPAN3-208ENST00000560514 RNF186Q9NXI6 227 aa23.39■■□□□ 1.33
TSPAN3-208ENST00000560514 SULF1Q8IWU6 871 aa23.38■■□□□ 1.33
TSPAN3-208ENST00000560514 TNRC18O15417 2968 aaPredicted RBP23.38■■□□□ 1.33
TSPAN3-208ENST00000560514 ADM5C9JUS6 153 aa23.37■■□□□ 1.33
TSPAN3-208ENST00000560514 XAGE3Q8WTP9 111 aa23.37■■□□□ 1.33
TSPAN3-208ENST00000560514 NECTIN2Q92692 538 aa23.37■■□□□ 1.33
TSPAN3-208ENST00000560514 EYA3Q99504 573 aa23.37■■□□□ 1.33
TSPAN3-208ENST00000560514 DUOX1Q9NRD9 1551 aa23.36■■□□□ 1.33
TSPAN3-208ENST00000560514 G3V3G9 751 aa23.35■■□□□ 1.33
TSPAN3-208ENST00000560514 KIF4BQ2VIQ3 1234 aa23.35■■□□□ 1.33
TSPAN3-208ENST00000560514 DCAF8Q5TAQ9 597 aa23.35■■□□□ 1.33
TSPAN3-208ENST00000560514 CTU1Q7Z7A3 348 aaKnown RBP23.35■■□□□ 1.33
TSPAN3-208ENST00000560514 REM2Q8IYK8 340 aaPredicted RBP23.35■■□□□ 1.33
TSPAN3-208ENST00000560514 LRRC37AA6NMS7 1700 aa23.35■■□□□ 1.33
TSPAN3-208ENST00000560514 ECE2O60344 883 aa23.34■■□□□ 1.33
TSPAN3-208ENST00000560514 EGFRP00533 1210 aa23.34■■□□□ 1.33
TSPAN3-208ENST00000560514 BABAM1Q9NWV8 329 aa23.34■■□□□ 1.33
TSPAN3-208ENST00000560514 DDX60Q8IY21 1712 aaKnown RBP23.33■■□□□ 1.33
TSPAN3-208ENST00000560514 SLC10A3P09131 477 aa23.33■■□□□ 1.33
TSPAN3-208ENST00000560514 DOK7Q18PE1 504 aa23.33■■□□□ 1.33
TSPAN3-208ENST00000560514 PRPF38BQ5VTL8 546 aaKnown RBP23.32■■□□□ 1.32
TSPAN3-208ENST00000560514 ZNF428Q96B54 188 aa23.32■■□□□ 1.32
TSPAN3-208ENST00000560514 CSRNP1Q96S65 589 aa23.32■■□□□ 1.32
TSPAN3-208ENST00000560514 GGA3Q9NZ52 723 aa23.32■■□□□ 1.32
TSPAN3-208ENST00000560514 RIPK4P57078 832 aa23.31■■□□□ 1.32
TSPAN3-208ENST00000560514 GPSM2P81274 684 aa23.31■■□□□ 1.32
TSPAN3-208ENST00000560514 CELF1Q92879 486 aaKnown RBP23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms