RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 NFKBIEO00221 500 aa12.35□□□□□ -0.43
SPG11-214ENST00000558989 DDX58O95786 925 aaKnown RBP12.35□□□□□ -0.43
SPG11-214ENST00000558989 ISCA1Q9BUE6 129 aa12.35□□□□□ -0.43
SPG11-214ENST00000558989 GPBP1L1Q9HC44 474 aaPredicted RBP12.35□□□□□ -0.43
SPG11-214ENST00000558989 CIZ1Q9ULV3 898 aaPredicted RBP12.35□□□□□ -0.43
SPG11-214ENST00000558989 FKBP5Q13451 457 aaPredicted RBP12.34□□□□□ -0.43
SPG11-214ENST00000558989 RBM17Q96I25 401 aaKnown RBP12.34□□□□□ -0.43
SPG11-214ENST00000558989 ZNF521Q96K83 1311 aa12.34□□□□□ -0.43
SPG11-214ENST00000558989 IBTKQ9P2D0 1353 aaPredicted RBP12.34□□□□□ -0.43
SPG11-214ENST00000558989 KLRG2A4D1S0 409 aaPredicted RBP12.34□□□□□ -0.43
SPG11-214ENST00000558989 ALDH1B1P30837 517 aa12.34□□□□□ -0.43
SPG11-214ENST00000558989 FLIIQ13045 1269 aa12.34□□□□□ -0.43
SPG11-214ENST00000558989 CCDC85AQ96PX6 553 aaPredicted RBP12.34□□□□□ -0.43
SPG11-214ENST00000558989 CHMP4AQ9BY43 222 aa12.34□□□□□ -0.43
SPG11-214ENST00000558989 ADCY9O60503 1353 aa12.33□□□□□ -0.43
SPG11-214ENST00000558989 CWF19L2Q2TBE0 894 aaKnown RBP12.33□□□□□ -0.44
SPG11-214ENST00000558989 CRY2Q49AN0 593 aa12.33□□□□□ -0.44
SPG11-214ENST00000558989 KSR2Q6VAB6 950 aa12.33□□□□□ -0.44
SPG11-214ENST00000558989 METTL22Q9BUU2 404 aaPredicted RBP12.33□□□□□ -0.44
SPG11-214ENST00000558989 TAOK3Q9H2K8 898 aa12.33□□□□□ -0.44
SPG11-214ENST00000558989 SPEF2Q9C093 1822 aa12.33□□□□□ -0.44
SPG11-214ENST00000558989 MYH3P11055 1940 aa12.33□□□□□ -0.44
SPG11-214ENST00000558989 LMNB1P20700 586 aa12.32□□□□□ -0.44
SPG11-214ENST00000558989 CCDC93Q567U6 631 aa12.32□□□□□ -0.44
SPG11-214ENST00000558989 F6X3S4 739 aa12.32□□□□□ -0.44
SPG11-214ENST00000558989 IRS4O14654 1257 aaPredicted RBP12.32□□□□□ -0.44
SPG11-214ENST00000558989 PPEF1O14829 653 aaPredicted RBP12.32□□□□□ -0.44
SPG11-214ENST00000558989 NEXNQ0ZGT2 675 aa12.32□□□□□ -0.44
SPG11-214ENST00000558989 SLC10A5Q5PT55 438 aa12.32□□□□□ -0.44
SPG11-214ENST00000558989 BCL2L13Q9BXK5 485 aa12.32□□□□□ -0.44
SPG11-214ENST00000558989 ZNF277Q9NRM2 450 aaPredicted RBP12.32□□□□□ -0.44
SPG11-214ENST00000558989 CWC25Q9NXE8 425 aaPredicted RBP12.32□□□□□ -0.44
SPG11-214ENST00000558989 ABCC4O15439 1325 aa12.32□□□□□ -0.44
SPG11-214ENST00000558989 E9PSI1 815 aa12.31□□□□□ -0.44
SPG11-214ENST00000558989 SLFN5Q08AF3 891 aa12.31□□□□□ -0.44
SPG11-214ENST00000558989 C7orf43Q8WVR3 580 aa12.31□□□□□ -0.44
SPG11-214ENST00000558989 COL4A1P02462 1669 aa12.31□□□□□ -0.44
SPG11-214ENST00000558989 IGKV5-2P06315 115 aa12.3□□□□□ -0.44
SPG11-214ENST00000558989 DDX46Q7L014 1031 aaKnown RBP12.3□□□□□ -0.44
SPG11-214ENST00000558989 NMRK2Q9NPI5 230 aa12.3□□□□□ -0.44
SPG11-214ENST00000558989 RIC1Q4ADV7 1423 aa12.3□□□□□ -0.44
SPG11-214ENST00000558989 HOXA10P31260 410 aaPredicted RBP12.3□□□□□ -0.44
SPG11-214ENST00000558989 HNRNPUQ00839 825 aaKnown RBP eCLIP12.3□□□□□ -0.44
SPG11-214ENST00000558989 SOGA3Q5TF21 947 aa12.3□□□□□ -0.44
SPG11-214ENST00000558989 SLC4A10Q6U841 1118 aa12.3□□□□□ -0.44
SPG11-214ENST00000558989 ZBTB38Q8NAP3 1195 aaPredicted RBP12.3□□□□□ -0.44
SPG11-214ENST00000558989 CCDC191Q8NCU4 936 aa12.3□□□□□ -0.44
SPG11-214ENST00000558989 DNAAF4Q8WXU2 420 aa12.3□□□□□ -0.44
SPG11-214ENST00000558989 CRAMP1Q96RY5 1269 aa12.3□□□□□ -0.44
SPG11-214ENST00000558989 MTMR7Q9Y216 660 aa12.3□□□□□ -0.44
SPG11-214ENST00000558989 RNF123Q5XPI4 1314 aa12.3□□□□□ -0.44
SPG11-214ENST00000558989 NEURL1BA8MQ27 555 aa12.28□□□□□ -0.44
SPG11-214ENST00000558989 ZMYND10O75800 440 aa12.28□□□□□ -0.44
SPG11-214ENST00000558989 FKBP4Q02790 459 aaKnown RBP eCLIP12.28□□□□□ -0.44
SPG11-214ENST00000558989 TRIM28Q13263 835 aaKnown RBP12.28□□□□□ -0.44
SPG11-214ENST00000558989 UBE3BQ7Z3V4 1068 aa12.28□□□□□ -0.44
SPG11-214ENST00000558989 CELF1Q92879 486 aaKnown RBP12.28□□□□□ -0.44
SPG11-214ENST00000558989 TMX4Q9H1E5 349 aaPredicted RBP12.28□□□□□ -0.44
SPG11-214ENST00000558989 RRAGCQ9HB90 399 aa12.28□□□□□ -0.44
SPG11-214ENST00000558989 SEC31BQ9NQW1 1179 aa12.28□□□□□ -0.44
SPG11-214ENST00000558989 PCCAP05165 728 aaPredicted RBP12.27□□□□□ -0.44
SPG11-214ENST00000558989 RTKN2Q8IZC4 609 aa12.27□□□□□ -0.44
SPG11-214ENST00000558989 PLCD3Q8N3E9 789 aa12.27□□□□□ -0.44
SPG11-214ENST00000558989 GRAPQ13588 217 aa12.27□□□□□ -0.45
SPG11-214ENST00000558989 GRAPLQ8TC17 118 aaPredicted RBP12.27□□□□□ -0.45
SPG11-214ENST00000558989 MKRN3Q13064 507 aaKnown RBP12.26□□□□□ -0.45
SPG11-214ENST00000558989 CCDC82Q8N4S0 544 aa12.26□□□□□ -0.45
SPG11-214ENST00000558989 SSH1Q8WYL5 1049 aa12.26□□□□□ -0.45
SPG11-214ENST00000558989 KDM2BQ8NHM5 1336 aa12.26□□□□□ -0.45
SPG11-214ENST00000558989 PDE8AO60658 829 aa12.25□□□□□ -0.45
SPG11-214ENST00000558989 IARSP41252 1262 aaKnown RBP12.25□□□□□ -0.45
SPG11-214ENST00000558989 GCKRQ14397 625 aa12.25□□□□□ -0.45
SPG11-214ENST00000558989 MRPL50Q8N5N7 158 aaKnown RBP12.25□□□□□ -0.45
SPG11-214ENST00000558989 RNF25Q96BH1 459 aaPredicted RBP12.25□□□□□ -0.45
SPG11-214ENST00000558989 ATP6V0A2Q9Y487 856 aa12.25□□□□□ -0.45
SPG11-214ENST00000558989 LTBP3Q9NS15 1303 aa12.25□□□□□ -0.45
SPG11-214ENST00000558989 KIF3CO14782 793 aa12.25□□□□□ -0.45
SPG11-214ENST00000558989 DDNO94850 711 aaPredicted RBP12.25□□□□□ -0.45
SPG11-214ENST00000558989 C1QTNF8P60827 252 aa12.25□□□□□ -0.45
SPG11-214ENST00000558989 SF3B3Q15393 1217 aaKnown RBP12.25□□□□□ -0.45
SPG11-214ENST00000558989 TMCO4Q5TGY1 634 aa12.25□□□□□ -0.45
SPG11-214ENST00000558989 IL27Q8NEV9 243 aa12.25□□□□□ -0.45
SPG11-214ENST00000558989 SMC4Q9NTJ3 1288 aa12.25□□□□□ -0.45
SPG11-214ENST00000558989 RYDENQ9NUL5 291 aaKnown RBP12.25□□□□□ -0.45
SPG11-214ENST00000558989 COL4A5P29400 1685 aa12.24□□□□□ -0.45
SPG11-214ENST00000558989 GLTPD2A6NH11 291 aa12.24□□□□□ -0.45
SPG11-214ENST00000558989 BBOX1O75936 387 aa12.24□□□□□ -0.45
SPG11-214ENST00000558989 AOC3Q16853 763 aa12.24□□□□□ -0.45
SPG11-214ENST00000558989 CCDC152Q4G0S7 254 aa12.24□□□□□ -0.45
SPG11-214ENST00000558989 DPY19L2Q6NUT2 758 aa12.24□□□□□ -0.45
SPG11-214ENST00000558989 DPP8Q6V1X1 898 aaPredicted RBP12.24□□□□□ -0.45
SPG11-214ENST00000558989 SP8Q8IXZ3 490 aa12.24□□□□□ -0.45
SPG11-214ENST00000558989 C16orf71Q8IYS4 520 aaPredicted RBP12.24□□□□□ -0.45
SPG11-214ENST00000558989 LARGE2Q8N3Y3 721 aa12.24□□□□□ -0.45
SPG11-214ENST00000558989 MPNDQ8N594 471 aa12.24□□□□□ -0.45
SPG11-214ENST00000558989 LINS1Q8NG48 757 aa12.24□□□□□ -0.45
SPG11-214ENST00000558989 GPR101Q96P66 508 aaPredicted RBP12.24□□□□□ -0.45
SPG11-214ENST00000558989 NSFL1CQ9UNZ2 370 aaKnown RBP12.24□□□□□ -0.45
SPG11-214ENST00000558989 ZNF541Q9H0D2 1346 aa12.24□□□□□ -0.45
SPG11-214ENST00000558989 PPIP5K2O43314 1243 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms